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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 404 |
| AccB1I | GGYRCC | 2 cut(s) | 272, 404 |
| AccBSI | CCGCTC | 1 cut(s) | 431 |
| AccIII | TCCGGA | 1 cut(s) | 478 |
| AclWI | GGATC | 2 cut(s) | 22, 437 |
| AcoI | YGGCCR | 1 cut(s) | 381 |
| AcuI | CTGAAG | 2 cut(s) | 17, 519 |
| AcyI | GRCGYC | 2 cut(s) | 192, 200 |
| AfaI | GTAC | 1 cut(s) | 406 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 37, 435 |
| AleI | CACNNNNGTG | 1 cut(s) | 62 |
| AluBI | AGCT | 2 cut(s) | 125, 503 |
| AluI | AGCT | 2 cut(s) | 125, 503 |
| Alw26I | GTCTC | 1 cut(s) | 480 |
| AlwI | GGATC | 2 cut(s) | 22, 437 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 128 |
| Ama87I | CYCGRG | 1 cut(s) | 393 |
| Aor13HI | TCCGGA | 1 cut(s) | 478 |
| AoxI | GGCC | 2 cut(s) | 215, 381 |
| ApeKI | GCWGC | 3 cut(s) | 47, 125, 466 |
| Asp718I | GGTACC | 1 cut(s) | 404 |
| AspS9I | GGNCC | 1 cut(s) | 215 |
| AsuHPI | GGTGA | 3 cut(s) | 25, 76, 311 |
| AvaI | CYCGRG | 1 cut(s) | 393 |
| BaeGI | GKGCMC | 1 cut(s) | 277 |
| BanI | GGYRCC | 2 cut(s) | 272, 404 |
| BauI | CACGAG | 1 cut(s) | 432 |
| BbvCI | CCTCAGC | 1 cut(s) | 267 |
| BbvI | GCAGC | 3 cut(s) | 59, 112, 478 |
| BccI | CCATC | 3 cut(s) | 304, 395, 416 |
| BceAI | ACGGC | 2 cut(s) | 202, 438 |
| BcoDI | GTCTC | 1 cut(s) | 480 |
| BfmI | CTRYAG | 1 cut(s) | 45 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 214, 223 |
| BisI | GCNGC | 6 cut(s) | 48, 117, 126, 180, 384, 467 |
| BlsI | GCNGC | 6 cut(s) | 49, 118, 127, 181, 385, 468 |
| BmeT110I | CYCGRG | 1 cut(s) | 393 |
| BmgT120I | GGNCC | 1 cut(s) | 215 |
| BmiI | GGNNCC | 4 cut(s) | 110, 255, 274, 406 |
| BpmI | CTGGAG | 1 cut(s) | 95 |
| Bpu10I | CCTNAGC | 3 cut(s) | 9, 267, 280 |
| BsaHI | GRCGYC | 2 cut(s) | 192, 200 |
| BsaI | GGTCTC | 1 cut(s) | 480 |
| BsaJI | CCNNGG | 1 cut(s) | 57 |
| BsaWI | WCCGGW | 1 cut(s) | 478 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 37, 435 |
| Bse1I | ACTGG | 1 cut(s) | 99 |
| BseAI | TCCGGA | 1 cut(s) | 478 |
| BseDI | CCNNGG | 1 cut(s) | 57 |
| BseGI | GGATG | 2 cut(s) | 408, 496 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 37, 435 |
| BseMII | CTCAG | 4 cut(s) | 165, 258, 275, 348 |
| BseNI | ACTGG | 1 cut(s) | 99 |
| BseSI | GKGCMC | 1 cut(s) | 277 |
| BseXI | GCAGC | 3 cut(s) | 59, 112, 478 |
| BseYI | CCCAGC | 2 cut(s) | 212, 321 |
| BshFI | GGCC | 2 cut(s) | 217, 383 |
| BshNI | GGYRCC | 2 cut(s) | 272, 404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 393 |
| BsiSI | CCGG | 1 cut(s) | 479 |
| BslFI | GGGAC | 1 cut(s) | 187 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 37, 435 |
| BsmAI | GTCTC | 1 cut(s) | 480 |
| BsmFI | GGGAC | 1 cut(s) | 187 |
| BsnI | GGCC | 2 cut(s) | 217, 383 |
| Bso31I | GGTCTC | 1 cut(s) | 480 |
| BsoBI | CYCGRG | 1 cut(s) | 393 |
| Bsp1286I | GDGCHC | 1 cut(s) | 277 |
| Bsp13I | TCCGGA | 1 cut(s) | 478 |
| Bsp143I | GATC | 2 cut(s) | 27, 442 |
| BspANI | GGCC | 2 cut(s) | 217, 383 |
| BspCNI | CTCAG | 4 cut(s) | 166, 259, 274, 349 |
| BspEI | TCCGGA | 1 cut(s) | 478 |
| BspLI | GGNNCC | 4 cut(s) | 110, 255, 274, 406 |
| BspMAI | CTGCAG | 1 cut(s) | 49 |
| BspPI | GGATC | 2 cut(s) | 22, 437 |
| BspT107I | GGYRCC | 2 cut(s) | 272, 404 |
| BspTNI | GGTCTC | 1 cut(s) | 480 |
| BsrBI | CCGCTC | 1 cut(s) | 431 |
| BsrI | ACTGG | 1 cut(s) | 99 |
| BssECI | CCNNGG | 1 cut(s) | 57 |
| BssMI | GATC | 2 cut(s) | 27, 442 |
| BssNI | GRCGYC | 2 cut(s) | 192, 200 |
| BssSI | CACGAG | 1 cut(s) | 432 |
| Bst2BI | CACGAG | 1 cut(s) | 432 |
| Bst4CI | ACNGT | 1 cut(s) | 474 |
| Bst6I | CTCTTC | 1 cut(s) | 62 |
| BstACI | GRCGYC | 2 cut(s) | 192, 200 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 232 |
| BstC8I | GCNNGC | 3 cut(s) | 190, 210, 277 |
| BstDEI | CTNAG | 6 cut(s) | 9, 174, 261, 267, 280, 357 |
| BstDSI | CCRYGG | 1 cut(s) | 57 |
| BstF5I | GGATG | 2 cut(s) | 408, 496 |
| BstKTI | GATC | 2 cut(s) | 30, 445 |
| BstMAI | GTCTC | 1 cut(s) | 480 |
| BstMBI | GATC | 2 cut(s) | 27, 442 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 122, 125, 134, 185, 214, 223, 232, 272, 285 |
| BstSFI | CTRYAG | 1 cut(s) | 45 |
| BstSLI | GKGCMC | 1 cut(s) | 277 |
| BstV1I | GCAGC | 3 cut(s) | 59, 112, 478 |
| BstX2I | RGATCY | 2 cut(s) | 27, 442 |
| BstYI | RGATCY | 2 cut(s) | 27, 442 |
| BsuRI | GGCC | 2 cut(s) | 217, 383 |
| BtgI | CCRYGG | 1 cut(s) | 57 |
| BtsCI | GGATG | 2 cut(s) | 408, 496 |
| Cac8I | GCNNGC | 3 cut(s) | 190, 210, 277 |
| CaiI | CAGNNNCTG | 1 cut(s) | 128 |
| Cfr13I | GGNCC | 1 cut(s) | 215 |
| CseI | GACGC | 3 cut(s) | 181, 189, 293 |
| Csp6I | GTAC | 1 cut(s) | 405 |
| CviAII | CATG | 2 cut(s) | 113, 516 |
| CviQI | GTAC | 1 cut(s) | 405 |
| DdeI | CTNAG | 6 cut(s) | 9, 174, 261, 267, 280, 357 |
| DpnI | GATC | 2 cut(s) | 29, 444 |
| DpnII | GATC | 2 cut(s) | 27, 442 |
| EaeI | YGGCCR | 1 cut(s) | 381 |
| Eam1104I | CTCTTC | 1 cut(s) | 62 |
| EarI | CTCTTC | 1 cut(s) | 62 |
| EciI | GGCGGA | 2 cut(s) | 116, 167 |
| Eco31I | GGTCTC | 1 cut(s) | 480 |
| Eco57I | CTGAAG | 2 cut(s) | 17, 519 |
| Eco88I | CYCGRG | 1 cut(s) | 393 |
| FaeI | CATG | 2 cut(s) | 116, 519 |
| FaiI | YATR | 4 cut(s) | 114, 159, 458, 517 |
| FaqI | GGGAC | 1 cut(s) | 187 |
| FatI | CATG | 2 cut(s) | 112, 515 |
| FauI | CCCGC | 3 cut(s) | 30, 217, 284 |
| Fnu4HI | GCNGC | 6 cut(s) | 48, 117, 126, 180, 384, 467 |
| FokI | GGATG | 2 cut(s) | 395, 503 |
| Fsp4HI | GCNGC | 6 cut(s) | 48, 117, 126, 180, 384, 467 |
| GluI | GCNGC | 6 cut(s) | 48, 117, 126, 180, 384, 467 |
| GsaI | CCCAGC | 2 cut(s) | 216, 325 |
| GsuI | CTGGAG | 1 cut(s) | 95 |
| HaeIII | GGCC | 2 cut(s) | 217, 383 |
| HapII | CCGG | 1 cut(s) | 479 |
| HgaI | GACGC | 3 cut(s) | 181, 189, 293 |
| Hin1I | GRCGYC | 2 cut(s) | 192, 200 |
| Hin1II | CATG | 2 cut(s) | 116, 519 |
| HincII | GTYRAC | 1 cut(s) | 171 |
| HindII | GTYRAC | 1 cut(s) | 171 |
| HinfI | GANTC | 3 cut(s) | 41, 317, 328 |
| HpaII | CCGG | 1 cut(s) | 479 |
| HphI | GGTGA | 3 cut(s) | 25, 76, 311 |
| Hpy166II | GTNNAC | 2 cut(s) | 57, 171 |
| Hpy188I | TCNGA | 5 cut(s) | 309, 358, 442, 447, 463 |
| Hpy188III | TCNNGA | 1 cut(s) | 479 |
| Hpy8I | GTNNAC | 2 cut(s) | 57, 171 |
| Hpy99I | CGWCG | 1 cut(s) | 223 |
| HpyAV | CCTTC | 2 cut(s) | 41, 178 |
| HpyCH4III | ACNGT | 1 cut(s) | 474 |
| HpyCH4V | TGCA | 1 cut(s) | 47 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 122, 125, 134, 185, 214, 223, 232, 272, 285 |
| HpyF3I | CTNAG | 6 cut(s) | 9, 174, 261, 267, 280, 357 |
| Hsp92I | GRCGYC | 2 cut(s) | 192, 200 |
| Hsp92II | CATG | 2 cut(s) | 116, 519 |
| Kpn2I | TCCGGA | 1 cut(s) | 478 |
| KpnI | GGTACC | 1 cut(s) | 408 |
| Kzo9I | GATC | 2 cut(s) | 27, 442 |
| LmnI | GCTCC | 1 cut(s) | 508 |
| LpnPI | CCDG | 9 cut(s) | 59, 80, 174, 198, 218, 248, 252, 335, 492 |
| Lsp1109I | GCAGC | 3 cut(s) | 59, 112, 478 |
| MalI | GATC | 2 cut(s) | 29, 444 |
| MbiI | CCGCTC | 1 cut(s) | 431 |
| MboI | GATC | 2 cut(s) | 27, 442 |
| MboII | GAAGA | 2 cut(s) | 28, 79 |
| MflI | RGATCY | 2 cut(s) | 27, 442 |
| MhlI | GDGCHC | 1 cut(s) | 277 |
| MlyI | GAGTC | 2 cut(s) | 311, 322 |
| MroI | TCCGGA | 1 cut(s) | 478 |
| MseI | TTAA | 1 cut(s) | 141 |
| MslI | CAYNNNNRTG | 1 cut(s) | 62 |
| MspA1I | CMGCKG | 4 cut(s) | 37, 125, 212, 325 |
| MspI | CCGG | 1 cut(s) | 479 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 122, 125, 134, 185, 214, 223, 232, 272, 285 |
| NdeII | GATC | 2 cut(s) | 27, 442 |
| NlaIII | CATG | 2 cut(s) | 116, 519 |
| NlaIV | GGNNCC | 4 cut(s) | 110, 255, 274, 406 |
| OliI | CACNNNNGTG | 1 cut(s) | 62 |
| PfeI | GAWTC | 1 cut(s) | 41 |
| PkrI | GCNGC | 6 cut(s) | 49, 118, 127, 181, 385, 468 |
| PleI | GAGTC | 2 cut(s) | 311, 322 |
| PpsI | GAGTC | 2 cut(s) | 311, 322 |
| PspFI | CCCAGC | 2 cut(s) | 212, 321 |
| PspN4I | GGNNCC | 4 cut(s) | 110, 255, 274, 406 |
| PspPI | GGNCC | 1 cut(s) | 215 |
| PstI | CTGCAG | 1 cut(s) | 49 |
| PstNI | CAGNNNCTG | 1 cut(s) | 128 |
| PsuI | RGATCY | 2 cut(s) | 27, 442 |
| PvuII | CAGCTG | 1 cut(s) | 125 |
| RsaI | GTAC | 1 cut(s) | 406 |
| RsaNI | GTAC | 1 cut(s) | 405 |
| RseI | CAYNNNNRTG | 1 cut(s) | 62 |
| SaqAI | TTAA | 1 cut(s) | 141 |
| SatI | GCNGC | 6 cut(s) | 48, 117, 126, 180, 384, 467 |
| Sau3AI | GATC | 2 cut(s) | 27, 442 |
| Sau96I | GGNCC | 1 cut(s) | 215 |
| SchI | GAGTC | 2 cut(s) | 311, 322 |
| SduI | GDGCHC | 1 cut(s) | 277 |
| SetI | ASST | 6 cut(s) | 15, 66, 87, 127, 286, 505 |
| SfcI | CTRYAG | 1 cut(s) | 45 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 62 |
| TaaI | ACNGT | 1 cut(s) | 474 |
| TaqI | TCGA | 1 cut(s) | 91 |
| TauI | GCSGC | 3 cut(s) | 119, 182, 386 |
| TfiI | GAWTC | 1 cut(s) | 41 |
| Tru1I | TTAA | 1 cut(s) | 141 |
| Tru9I | TTAA | 1 cut(s) | 141 |
| TseI | GCWGC | 3 cut(s) | 47, 125, 466 |
| TspGWI | ACGGA | 1 cut(s) | 74 |