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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 327, 368 |
| AccII | CGCG | 2 cut(s) | 315, 597 |
| AclWI | GGATC | 3 cut(s) | 16, 530, 549 |
| AcuI | CTGAAG | 1 cut(s) | 544 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 206, 263 |
| AgeI | ACCGGT | 1 cut(s) | 206 |
| AjiI | CACGTC | 1 cut(s) | 132 |
| AjnI | CCWGG | 1 cut(s) | 406 |
| AluBI | AGCT | 4 cut(s) | 427, 444, 495, 564 |
| AluI | AGCT | 4 cut(s) | 427, 444, 495, 564 |
| Alw26I | GTCTC | 2 cut(s) | 22, 312 |
| AlwI | GGATC | 3 cut(s) | 16, 530, 549 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 359 |
| AoxI | GGCC | 3 cut(s) | 2, 161, 214 |
| ApeKI | GCWGC | 3 cut(s) | 169, 180, 516 |
| AsiGI | ACCGGT | 1 cut(s) | 206 |
| AspLEI | GCGC | 3 cut(s) | 39, 462, 597 |
| AspS9I | GGNCC | 4 cut(s) | 3, 135, 162, 214 |
| AsuHPI | GGTGA | 1 cut(s) | 246 |
| AvaII | GGWCC | 1 cut(s) | 135 |
| BaeGI | GKGCMC | 2 cut(s) | 332, 373 |
| BanI | GGYRCC | 2 cut(s) | 327, 368 |
| BbsI | GAAGAC | 2 cut(s) | 16, 316 |
| BbvI | GCAGC | 3 cut(s) | 156, 192, 503 |
| BccI | CCATC | 4 cut(s) | 22, 94, 234, 330 |
| BceAI | ACGGC | 1 cut(s) | 453 |
| BciT130I | CCWGG | 1 cut(s) | 408 |
| BcoDI | GTCTC | 2 cut(s) | 22, 312 |
| BfaI | CTAG | 2 cut(s) | 335, 565 |
| BfoI | RGCGCY | 1 cut(s) | 40 |
| BisI | GCNGC | 8 cut(s) | 150, 170, 181, 217, 517, 533, 575, 598 |
| BlsI | GCNGC | 8 cut(s) | 151, 171, 182, 218, 518, 534, 576, 599 |
| Bme1390I | CCNGG | 1 cut(s) | 408 |
| Bme18I | GGWCC | 1 cut(s) | 135 |
| BmgBI | CACGTC | 1 cut(s) | 132 |
| BmgT120I | GGNCC | 4 cut(s) | 3, 135, 162, 214 |
| BmiI | GGNNCC | 3 cut(s) | 164, 329, 370 |
| BmrFI | CCNGG | 1 cut(s) | 408 |
| BmsI | GCATC | 1 cut(s) | 420 |
| BpiI | GAAGAC | 2 cut(s) | 16, 316 |
| BpmI | CTGGAG | 2 cut(s) | 174, 517 |
| Bpu10I | CCTNAGC | 1 cut(s) | 536 |
| BsaBI | GATNNNNATC | 1 cut(s) | 553 |
| BsaI | GGTCTC | 1 cut(s) | 312 |
| BsaJI | CCNNGG | 5 cut(s) | 59, 90, 138, 364, 373 |
| BsaWI | WCCGGW | 1 cut(s) | 206 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 206, 263 |
| Bse118I | RCCGGY | 1 cut(s) | 206 |
| Bse1I | ACTGG | 1 cut(s) | 38 |
| Bse3DI | GCAATG | 1 cut(s) | 257 |
| Bse8I | GATNNNNATC | 1 cut(s) | 553 |
| BseBI | CCWGG | 1 cut(s) | 408 |
| BseDI | CCNNGG | 5 cut(s) | 59, 90, 138, 364, 373 |
| BseJI | GATNNNNATC | 1 cut(s) | 553 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 206, 263 |
| BseMI | GCAATG | 1 cut(s) | 257 |
| BseMII | CTCAG | 2 cut(s) | 17, 427 |
| BseNI | ACTGG | 1 cut(s) | 38 |
| BseRI | GAGGAG | 1 cut(s) | 312 |
| BseSI | GKGCMC | 2 cut(s) | 332, 373 |
| BseXI | GCAGC | 3 cut(s) | 156, 192, 503 |
| BsgI | GTGCAG | 1 cut(s) | 199 |
| Bsh1236I | CGCG | 2 cut(s) | 315, 597 |
| BshFI | GGCC | 3 cut(s) | 4, 163, 216 |
| BshNI | GGYRCC | 2 cut(s) | 327, 368 |
| BshTI | ACCGGT | 1 cut(s) | 206 |
| BsiSI | CCGG | 2 cut(s) | 207, 463 |
| BslFI | GGGAC | 1 cut(s) | 436 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 206, 263 |
| BsmAI | GTCTC | 2 cut(s) | 22, 312 |
| BsmFI | GGGAC | 1 cut(s) | 436 |
| BsmI | GAATGC | 1 cut(s) | 200 |
| BsnI | GGCC | 3 cut(s) | 4, 163, 216 |
| Bso31I | GGTCTC | 1 cut(s) | 312 |
| Bsp1286I | GDGCHC | 2 cut(s) | 332, 373 |
| Bsp143I | GATC | 4 cut(s) | 21, 471, 522, 554 |
| BspANI | GGCC | 3 cut(s) | 4, 163, 216 |
| BspCNI | CTCAG | 2 cut(s) | 18, 426 |
| BspFNI | CGCG | 2 cut(s) | 315, 597 |
| BspLI | GGNNCC | 3 cut(s) | 164, 329, 370 |
| BspPI | GGATC | 3 cut(s) | 16, 530, 549 |
| BspT107I | GGYRCC | 2 cut(s) | 327, 368 |
| BspTNI | GGTCTC | 1 cut(s) | 312 |
| BsrDI | GCAATG | 1 cut(s) | 257 |
| BsrFI | RCCGGY | 1 cut(s) | 206 |
| BsrI | ACTGG | 1 cut(s) | 38 |
| BssAI | RCCGGY | 1 cut(s) | 206 |
| BssECI | CCNNGG | 5 cut(s) | 59, 90, 138, 364, 373 |
| BssMI | GATC | 4 cut(s) | 21, 471, 522, 554 |
| BssT1I | CCWWGG | 2 cut(s) | 90, 364 |
| Bst2UI | CCWGG | 1 cut(s) | 408 |
| Bst4CI | ACNGT | 4 cut(s) | 139, 177, 252, 387 |
| Bst6I | CTCTTC | 1 cut(s) | 289 |
| BstC8I | GCNNGC | 6 cut(s) | 147, 200, 214, 397, 401, 442 |
| BstDEI | CTNAG | 4 cut(s) | 26, 50, 413, 536 |
| BstDSI | CCRYGG | 3 cut(s) | 59, 138, 373 |
| BstFNI | CGCG | 2 cut(s) | 315, 597 |
| BstH2I | RGCGCY | 1 cut(s) | 40 |
| BstHHI | GCGC | 3 cut(s) | 39, 462, 597 |
| BstKTI | GATC | 4 cut(s) | 24, 474, 525, 557 |
| BstMAI | GTCTC | 2 cut(s) | 22, 312 |
| BstMBI | GATC | 4 cut(s) | 21, 471, 522, 554 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 169, 354, 368, 583, 592 |
| BstNI | CCWGG | 1 cut(s) | 408 |
| BstSCI | CCNGG | 1 cut(s) | 406 |
| BstSLI | GKGCMC | 2 cut(s) | 332, 373 |
| BstUI | CGCG | 2 cut(s) | 315, 597 |
| BstV1I | GCAGC | 3 cut(s) | 156, 192, 503 |
| BstV2I | GAAGAC | 2 cut(s) | 16, 316 |
| BstX2I | RGATCY | 1 cut(s) | 554 |
| BstYI | RGATCY | 1 cut(s) | 554 |
| BsuRI | GGCC | 3 cut(s) | 4, 163, 216 |
| BtgI | CCRYGG | 3 cut(s) | 59, 138, 373 |
| BtrI | CACGTC | 1 cut(s) | 132 |
| BtsIMutI | CAGTG | 3 cut(s) | 31, 392, 421 |
| Cac8I | GCNNGC | 6 cut(s) | 147, 200, 214, 397, 401, 442 |
| CaiI | CAGNNNCTG | 1 cut(s) | 359 |
| CfoI | GCGC | 3 cut(s) | 39, 462, 597 |
| Cfr10I | RCCGGY | 1 cut(s) | 206 |
| Cfr13I | GGNCC | 4 cut(s) | 3, 135, 162, 214 |
| CseI | GACGC | 2 cut(s) | 261, 321 |
| CspAI | ACCGGT | 1 cut(s) | 206 |
| CviAII | CATG | 2 cut(s) | 484, 507 |
| DdeI | CTNAG | 4 cut(s) | 26, 50, 413, 536 |
| DpnI | GATC | 4 cut(s) | 23, 473, 524, 556 |
| DpnII | GATC | 4 cut(s) | 21, 471, 522, 554 |
| Eam1104I | CTCTTC | 1 cut(s) | 289 |
| EarI | CTCTTC | 1 cut(s) | 289 |
| Eco130I | CCWWGG | 2 cut(s) | 90, 364 |
| Eco31I | GGTCTC | 1 cut(s) | 312 |
| Eco47I | GGWCC | 1 cut(s) | 135 |
| Eco57I | CTGAAG | 1 cut(s) | 544 |
| EcoO109I | RGGNCCY | 1 cut(s) | 162 |
| EcoRII | CCWGG | 1 cut(s) | 406 |
| EcoT14I | CCWWGG | 2 cut(s) | 90, 364 |
| ErhI | CCWWGG | 2 cut(s) | 90, 364 |
| FaeI | CATG | 2 cut(s) | 487, 510 |
| FaiI | YATR | 3 cut(s) | 485, 508, 514 |
| FaqI | GGGAC | 1 cut(s) | 436 |
| FatI | CATG | 2 cut(s) | 483, 506 |
| FauI | CCCGC | 5 cut(s) | 114, 205, 207, 255, 512 |
| Fnu4HI | GCNGC | 8 cut(s) | 150, 170, 181, 217, 517, 533, 575, 598 |
| Fsp4HI | GCNGC | 8 cut(s) | 150, 170, 181, 217, 517, 533, 575, 598 |
| FspBI | CTAG | 2 cut(s) | 335, 565 |
| GlaI | GCGC | 3 cut(s) | 38, 461, 596 |
| GluI | GCNGC | 8 cut(s) | 150, 170, 181, 217, 517, 533, 575, 598 |
| GsuI | CTGGAG | 2 cut(s) | 174, 517 |
| HaeII | RGCGCY | 1 cut(s) | 40 |
| HaeIII | GGCC | 3 cut(s) | 4, 163, 216 |
| HapII | CCGG | 2 cut(s) | 207, 463 |
| HgaI | GACGC | 2 cut(s) | 261, 321 |
| HhaI | GCGC | 3 cut(s) | 39, 462, 597 |
| Hin1II | CATG | 2 cut(s) | 487, 510 |
| Hin6I | GCGC | 3 cut(s) | 37, 460, 595 |
| HinP1I | GCGC | 3 cut(s) | 37, 460, 595 |
| HinfI | GANTC | 3 cut(s) | 54, 411, 568 |
| HpaII | CCGG | 2 cut(s) | 207, 463 |
| HphI | GGTGA | 1 cut(s) | 246 |
| Hpy166II | GTNNAC | 1 cut(s) | 135 |
| Hpy188I | TCNGA | 1 cut(s) | 476 |
| Hpy188III | TCNNGA | 2 cut(s) | 25, 543 |
| Hpy8I | GTNNAC | 1 cut(s) | 135 |
| Hpy99I | CGWCG | 2 cut(s) | 115, 277 |
| HpyAV | CCTTC | 4 cut(s) | 216, 297, 338, 568 |
| HpyCH4III | ACNGT | 4 cut(s) | 139, 177, 252, 387 |
| HpyCH4IV | ACGT | 2 cut(s) | 131, 422 |
| HpyCH4V | TGCA | 3 cut(s) | 172, 180, 395 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 169, 354, 368, 583, 592 |
| HpyF3I | CTNAG | 4 cut(s) | 26, 50, 413, 536 |
| HpySE526I | ACGT | 2 cut(s) | 131, 422 |
| Hsp92II | CATG | 2 cut(s) | 487, 510 |
| HspAI | GCGC | 3 cut(s) | 37, 460, 595 |
| Kzo9I | GATC | 4 cut(s) | 21, 471, 522, 554 |
| LmnI | GCTCC | 1 cut(s) | 498 |
| Lsp1109I | GCAGC | 3 cut(s) | 156, 192, 503 |
| LweI | GCATC | 1 cut(s) | 420 |
| MaeI | CTAG | 2 cut(s) | 335, 565 |
| MaeII | ACGT | 2 cut(s) | 131, 422 |
| MaeIII | GTNAC | 2 cut(s) | 252, 418 |
| MalI | GATC | 4 cut(s) | 23, 473, 524, 556 |
| MboI | GATC | 4 cut(s) | 21, 471, 522, 554 |
| MboII | GAAGA | 5 cut(s) | 21, 306, 321, 353, 558 |
| MflI | RGATCY | 1 cut(s) | 554 |
| MhlI | GDGCHC | 2 cut(s) | 332, 373 |
| MlyI | GAGTC | 3 cut(s) | 48, 405, 562 |
| MnlI | CCTC | 3 cut(s) | 290, 293, 383 |
| MslI | CAYNNNNRTG | 1 cut(s) | 511 |
| MspA1I | CMGCKG | 1 cut(s) | 495 |
| MspI | CCGG | 2 cut(s) | 207, 463 |
| MspR9I | CCNGG | 1 cut(s) | 408 |
| Mva1269I | GAATGC | 1 cut(s) | 200 |
| MvaI | CCWGG | 1 cut(s) | 408 |
| MvnI | CGCG | 2 cut(s) | 315, 597 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 169, 354, 368, 583, 592 |
| NdeII | GATC | 4 cut(s) | 21, 471, 522, 554 |
| NlaIII | CATG | 2 cut(s) | 487, 510 |
| NlaIV | GGNNCC | 3 cut(s) | 164, 329, 370 |
| NmuCI | GTSAC | 2 cut(s) | 252, 418 |
| PctI | GAATGC | 1 cut(s) | 200 |
| PinAI | ACCGGT | 1 cut(s) | 206 |
| PkrI | GCNGC | 8 cut(s) | 151, 171, 182, 218, 518, 534, 576, 599 |
| PleI | GAGTC | 3 cut(s) | 48, 405, 562 |
| PpsI | GAGTC | 3 cut(s) | 48, 405, 562 |
| Psp6I | CCWGG | 1 cut(s) | 406 |
| PspGI | CCWGG | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 3 cut(s) | 164, 329, 370 |
| PspPI | GGNCC | 4 cut(s) | 3, 135, 162, 214 |
| PstNI | CAGNNNCTG | 1 cut(s) | 359 |
| PsuI | RGATCY | 1 cut(s) | 554 |
| PvuII | CAGCTG | 1 cut(s) | 495 |
| RseI | CAYNNNNRTG | 1 cut(s) | 511 |
| SatI | GCNGC | 8 cut(s) | 150, 170, 181, 217, 517, 533, 575, 598 |
| Sau3AI | GATC | 4 cut(s) | 21, 471, 522, 554 |
| Sau96I | GGNCC | 4 cut(s) | 3, 135, 162, 214 |
| SchI | GAGTC | 3 cut(s) | 48, 405, 562 |
| ScrFI | CCNGG | 1 cut(s) | 408 |
| SduI | GDGCHC | 2 cut(s) | 332, 373 |
| SfaNI | GCATC | 1 cut(s) | 420 |
| SinI | GGWCC | 1 cut(s) | 135 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 511 |
| SspMI | CTAG | 2 cut(s) | 335, 565 |
| StyD4I | CCNGG | 1 cut(s) | 406 |
| StyI | CCWWGG | 2 cut(s) | 90, 364 |
| TaaI | ACNGT | 4 cut(s) | 139, 177, 252, 387 |
| TaiI | ACGT | 2 cut(s) | 134, 425 |
| TaqI | TCGA | 1 cut(s) | 238 |
| TauI | GCSGC | 5 cut(s) | 152, 219, 535, 577, 600 |
| TscAI | CASTG | 3 cut(s) | 38, 392, 421 |
| TseFI | GTSAC | 2 cut(s) | 252, 418 |
| TseI | GCWGC | 3 cut(s) | 169, 180, 516 |
| Tsp45I | GTSAC | 2 cut(s) | 252, 418 |
| TspDTI | ATGAA | 1 cut(s) | 307 |
| TspRI | CASTG | 3 cut(s) | 38, 392, 421 |
| VpaK11BI | GGWCC | 1 cut(s) | 135 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 88, 371 |
| XspI | CTAG | 2 cut(s) | 335, 565 |