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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 80, 757 |
| Acc36I | ACCTGC | 3 cut(s) | 80, 757, 778 |
| AccB1I | GGYRCC | 4 cut(s) | 361, 466, 635, 954 |
| AccBSI | CCGCTC | 2 cut(s) | 713, 1168 |
| AccII | CGCG | 1 cut(s) | 898 |
| AclI | AACGTT | 1 cut(s) | 555 |
| AcsI | RAATTY | 3 cut(s) | 379, 473, 509 |
| AcuI | CTGAAG | 2 cut(s) | 311, 618 |
| AcyI | GRCGYC | 1 cut(s) | 636 |
| AfaI | GTAC | 4 cut(s) | 184, 528, 709, 974 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 435, 592, 693, 857, 927, 938 |
| AflIII | ACRYGT | 1 cut(s) | 523 |
| AgsI | TTSAA | 2 cut(s) | 385, 1037 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 394 |
| AhlI | ACTAGT | 2 cut(s) | 113, 1222 |
| AjiI | CACGTC | 2 cut(s) | 83, 864 |
| AjnI | CCWGG | 8 cut(s) | 5, 164, 401, 514, 585, 667, 984, 1188 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 925, 957 |
| AluBI | AGCT | 5 cut(s) | 98, 778, 979, 1021, 1209 |
| AluI | AGCT | 5 cut(s) | 98, 778, 979, 1021, 1209 |
| Alw21I | GWGCWC | 1 cut(s) | 741 |
| Alw26I | GTCTC | 2 cut(s) | 402, 1046 |
| Ama87I | CYCGRG | 1 cut(s) | 850 |
| AoxI | GGCC | 7 cut(s) | 665, 670, 684, 827, 873, 883, 929 |
| ApeKI | GCWGC | 4 cut(s) | 784, 989, 1118, 1230 |
| ApoI | RAATTY | 3 cut(s) | 379, 473, 509 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 562, 594 |
| AspA2I | CCTAGG | 1 cut(s) | 674 |
| AspLEI | GCGC | 2 cut(s) | 222, 638 |
| AspS9I | GGNCC | 6 cut(s) | 169, 665, 671, 684, 929, 1159 |
| AsuC2I | CCSGG | 4 cut(s) | 536, 851, 852, 922 |
| AsuHPI | GGTGA | 5 cut(s) | 100, 295, 349, 466, 737 |
| AsuNHI | GCTAGC | 1 cut(s) | 94 |
| AvaI | CYCGRG | 1 cut(s) | 850 |
| AvaII | GGWCC | 2 cut(s) | 169, 1159 |
| AvrII | CCTAGG | 1 cut(s) | 674 |
| AxyI | CCTNAGG | 2 cut(s) | 813, 1005 |
| BaeGI | GKGCMC | 3 cut(s) | 364, 469, 957 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 174, 207, 1168, 1201 |
| BanI | GGYRCC | 4 cut(s) | 361, 466, 635, 954 |
| BanII | GRGCYC | 3 cut(s) | 285, 541, 756 |
| BauI | CACGAG | 1 cut(s) | 278 |
| Bbv12I | GWGCWC | 1 cut(s) | 741 |
| BbvCI | CCTCAGC | 1 cut(s) | 1022 |
| BbvI | GCAGC | 3 cut(s) | 796, 1001, 1130 |
| BccI | CCATC | 2 cut(s) | 122, 293 |
| BciT130I | CCWGG | 8 cut(s) | 7, 166, 403, 516, 587, 669, 986, 1190 |
| BciVI | GTATCC | 2 cut(s) | 45, 1196 |
| BcnI | CCSGG | 4 cut(s) | 536, 851, 852, 922 |
| BcoDI | GTCTC | 2 cut(s) | 402, 1046 |
| BcuI | ACTAGT | 2 cut(s) | 113, 1222 |
| BfaI | CTAG | 8 cut(s) | 48, 95, 99, 114, 675, 705, 779, 1223 |
| BfoI | RGCGCY | 1 cut(s) | 639 |
| BfuAI | ACCTGC | 3 cut(s) | 80, 757, 778 |
| BfuI | GTATCC | 2 cut(s) | 45, 1196 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 826 |
| BglII | AGATCT | 1 cut(s) | 330 |
| BisI | GCNGC | 8 cut(s) | 617, 785, 821, 859, 990, 1091, 1119, 1231 |
| BlnI | CCTAGG | 1 cut(s) | 674 |
| BlsI | GCNGC | 8 cut(s) | 618, 786, 822, 860, 991, 1092, 1120, 1232 |
| Bme18I | GGWCC | 2 cut(s) | 169, 1159 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 394 |
| BmeT110I | CYCGRG | 1 cut(s) | 850 |
| BmgBI | CACGTC | 2 cut(s) | 83, 864 |
| BmgT120I | GGNCC | 6 cut(s) | 169, 665, 671, 684, 929, 1159 |
| BmiI | GGNNCC | 8 cut(s) | 170, 363, 468, 637, 666, 819, 956, 1160 |
| BmrI | ACTGGG | 1 cut(s) | 699 |
| BmsI | GCATC | 6 cut(s) | 597, 628, 899, 1001, 1114, 1140 |
| BmtI | GCTAGC | 1 cut(s) | 98 |
| BmuI | ACTGGG | 1 cut(s) | 699 |
| BpmI | CTGGAG | 5 cut(s) | 171, 222, 537, 1028, 1215 |
| Bpu10I | CCTNAGC | 2 cut(s) | 714, 1022 |
| BpuEI | CTTGAG | 1 cut(s) | 1184 |
| BpuMI | CCSGG | 4 cut(s) | 536, 851, 852, 922 |
| BsaAI | YACGTR | 1 cut(s) | 1180 |
| BsaHI | GRCGYC | 1 cut(s) | 636 |
| BsaI | GGTCTC | 1 cut(s) | 1046 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 510, 513, 540, 543 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 435, 592, 693, 857, 927, 938 |
| Bse1I | ACTGG | 2 cut(s) | 188, 694 |
| Bse21I | CCTNAGG | 2 cut(s) | 813, 1005 |
| Bse3DI | GCAATG | 2 cut(s) | 24, 216 |
| BseBI | CCWGG | 8 cut(s) | 7, 166, 403, 516, 587, 669, 986, 1190 |
| BseGI | GGATG | 1 cut(s) | 1129 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 435, 592, 693, 857, 927, 938 |
| BseMI | GCAATG | 2 cut(s) | 24, 216 |
| BseMII | CTCAG | 5 cut(s) | 358, 728, 827, 1013, 1019 |
| BseNI | ACTGG | 2 cut(s) | 188, 694 |
| BseRI | GAGGAG | 2 cut(s) | 605, 1043 |
| BseSI | GKGCMC | 3 cut(s) | 364, 469, 957 |
| BseXI | GCAGC | 3 cut(s) | 796, 1001, 1130 |
| BsgI | GTGCAG | 1 cut(s) | 677 |
| Bsh1236I | CGCG | 1 cut(s) | 898 |
| BshFI | GGCC | 7 cut(s) | 667, 672, 686, 829, 875, 885, 931 |
| BshNI | GGYRCC | 4 cut(s) | 361, 466, 635, 954 |
| BsiHKAI | GWGCWC | 1 cut(s) | 741 |
| BsiHKCI | CYCGRG | 1 cut(s) | 850 |
| BsiSI | CCGG | 3 cut(s) | 535, 851, 921 |
| BslFI | GGGAC | 1 cut(s) | 1172 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 435, 592, 693, 857, 927, 938 |
| BsmAI | GTCTC | 2 cut(s) | 402, 1046 |
| BsmFI | GGGAC | 1 cut(s) | 1172 |
| BsnI | GGCC | 7 cut(s) | 667, 672, 686, 829, 875, 885, 931 |
| Bso31I | GGTCTC | 1 cut(s) | 1046 |
| BsoBI | CYCGRG | 1 cut(s) | 850 |
| Bsp1286I | GDGCHC | 7 cut(s) | 285, 364, 469, 541, 741, 756, 957 |
| Bsp143I | GATC | 2 cut(s) | 330, 1153 |
| Bsp68I | TCGCGA | 1 cut(s) | 898 |
| BspANI | GGCC | 7 cut(s) | 667, 672, 686, 829, 875, 885, 931 |
| BspCNI | CTCAG | 5 cut(s) | 357, 727, 826, 1014, 1018 |
| BspFNI | CGCG | 1 cut(s) | 898 |
| BspLI | GGNNCC | 8 cut(s) | 170, 363, 468, 637, 666, 819, 956, 1160 |
| BspMI | ACCTGC | 3 cut(s) | 80, 757, 778 |
| BspOI | GCTAGC | 1 cut(s) | 98 |
| BspT107I | GGYRCC | 4 cut(s) | 361, 466, 635, 954 |
| BspTNI | GGTCTC | 1 cut(s) | 1046 |
| BsrBI | CCGCTC | 2 cut(s) | 713, 1168 |
| BsrDI | GCAATG | 2 cut(s) | 24, 216 |
| BsrI | ACTGG | 2 cut(s) | 188, 694 |
| BssMI | GATC | 2 cut(s) | 330, 1153 |
| BssNI | GRCGYC | 1 cut(s) | 636 |
| BssSI | CACGAG | 1 cut(s) | 278 |
| BssT1I | CCWWGG | 3 cut(s) | 429, 674, 1101 |
| Bst2BI | CACGAG | 1 cut(s) | 278 |
| Bst2UI | CCWGG | 8 cut(s) | 7, 166, 403, 516, 587, 669, 986, 1190 |
| Bst4CI | ACNGT | 3 cut(s) | 182, 749, 910 |
| Bst6I | CTCTTC | 1 cut(s) | 144 |
| BstACI | GRCGYC | 1 cut(s) | 636 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1124 |
| BstBAI | YACGTR | 1 cut(s) | 1180 |
| BstC8I | GCNNGC | 7 cut(s) | 77, 96, 142, 353, 408, 741, 1129 |
| BstDEI | CTNAG | 5 cut(s) | 344, 714, 813, 1005, 1022 |
| BstF5I | GGATG | 1 cut(s) | 1129 |
| BstFNI | CGCG | 1 cut(s) | 898 |
| BstH2I | RGCGCY | 1 cut(s) | 639 |
| BstHHI | GCGC | 2 cut(s) | 222, 638 |
| BstKTI | GATC | 2 cut(s) | 333, 1156 |
| BstMAI | GTCTC | 2 cut(s) | 402, 1046 |
| BstMBI | GATC | 2 cut(s) | 330, 1153 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 206, 616, 664, 784, 817, 826, 976, 1124 |
| BstNI | CCWGG | 8 cut(s) | 7, 166, 403, 516, 587, 669, 986, 1190 |
| BstNSI | RCATGY | 1 cut(s) | 527 |
| BstSLI | GKGCMC | 3 cut(s) | 364, 469, 957 |
| BstUI | CGCG | 1 cut(s) | 898 |
| BstV1I | GCAGC | 3 cut(s) | 796, 1001, 1130 |
| BstX2I | RGATCY | 1 cut(s) | 330 |
| BstYI | RGATCY | 1 cut(s) | 330 |
| Bsu36I | CCTNAGG | 2 cut(s) | 813, 1005 |
| BsuI | GTATCC | 2 cut(s) | 45, 1196 |
| BsuRI | GGCC | 7 cut(s) | 667, 672, 686, 829, 875, 885, 931 |
| BtrI | CACGTC | 2 cut(s) | 83, 864 |
| BtsCI | GGATG | 1 cut(s) | 1129 |
| BtsIMutI | CAGTG | 1 cut(s) | 687 |
| BtuMI | TCGCGA | 1 cut(s) | 898 |
| BveI | ACCTGC | 3 cut(s) | 80, 757, 778 |
| Cac8I | GCNNGC | 7 cut(s) | 77, 96, 142, 353, 408, 741, 1129 |
| CfoI | GCGC | 2 cut(s) | 222, 638 |
| Cfr13I | GGNCC | 6 cut(s) | 169, 665, 671, 684, 929, 1159 |
| Cfr9I | CCCGGG | 1 cut(s) | 850 |
| CseI | GACGC | 2 cut(s) | 1124, 1132 |
| Csp6I | GTAC | 4 cut(s) | 183, 527, 708, 973 |
| CviAII | CATG | 1 cut(s) | 524 |
| CviQI | GTAC | 4 cut(s) | 183, 527, 708, 973 |
| DdeI | CTNAG | 5 cut(s) | 344, 714, 813, 1005, 1022 |
| DinI | GGCGCC | 1 cut(s) | 637 |
| DpnI | GATC | 2 cut(s) | 332, 1155 |
| DpnII | GATC | 2 cut(s) | 330, 1153 |
| DriI | GACNNNNNGTC | 1 cut(s) | 394 |
| Eam1104I | CTCTTC | 1 cut(s) | 144 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 394 |
| EarI | CTCTTC | 1 cut(s) | 144 |
| EciI | GGCGGA | 1 cut(s) | 521 |
| Eco130I | CCWWGG | 3 cut(s) | 429, 674, 1101 |
| Eco147I | AGGCCT | 1 cut(s) | 829 |
| Eco24I | GRGCYC | 3 cut(s) | 285, 541, 756 |
| Eco31I | GGTCTC | 1 cut(s) | 1046 |
| Eco47I | GGWCC | 2 cut(s) | 169, 1159 |
| Eco57I | CTGAAG | 2 cut(s) | 311, 618 |
| Eco81I | CCTNAGG | 2 cut(s) | 813, 1005 |
| Eco88I | CYCGRG | 1 cut(s) | 850 |
| EcoO109I | RGGNCCY | 3 cut(s) | 169, 665, 1159 |
| EcoRII | CCWGG | 8 cut(s) | 5, 164, 401, 514, 585, 667, 984, 1188 |
| EcoT14I | CCWWGG | 3 cut(s) | 429, 674, 1101 |
| EcoT38I | GRGCYC | 3 cut(s) | 285, 541, 756 |
| EgeI | GGCGCC | 1 cut(s) | 637 |
| EheI | GGCGCC | 1 cut(s) | 637 |
| ErhI | CCWWGG | 3 cut(s) | 429, 674, 1101 |
| FaeI | CATG | 1 cut(s) | 527 |
| FaiI | YATR | 5 cut(s) | 267, 444, 525, 1183, 1206 |
| FaqI | GGGAC | 1 cut(s) | 1172 |
| FatI | CATG | 1 cut(s) | 523 |
| FauI | CCCGC | 2 cut(s) | 573, 1136 |
| Fnu4HI | GCNGC | 8 cut(s) | 617, 785, 821, 859, 990, 1091, 1119, 1231 |
| FokI | GGATG | 1 cut(s) | 1136 |
| FriOI | GRGCYC | 3 cut(s) | 285, 541, 756 |
| Fsp4HI | GCNGC | 8 cut(s) | 617, 785, 821, 859, 990, 1091, 1119, 1231 |
| FspBI | CTAG | 8 cut(s) | 48, 95, 99, 114, 675, 705, 779, 1223 |
| GlaI | GCGC | 2 cut(s) | 221, 637 |
| GluI | GCNGC | 8 cut(s) | 617, 785, 821, 859, 990, 1091, 1119, 1231 |
| GsuI | CTGGAG | 5 cut(s) | 171, 222, 537, 1028, 1215 |
| HaeII | RGCGCY | 1 cut(s) | 639 |
| HaeIII | GGCC | 7 cut(s) | 667, 672, 686, 829, 875, 885, 931 |
| HapII | CCGG | 3 cut(s) | 535, 851, 921 |
| HgaI | GACGC | 2 cut(s) | 1124, 1132 |
| HhaI | GCGC | 2 cut(s) | 222, 638 |
| Hin1I | GRCGYC | 1 cut(s) | 636 |
| Hin1II | CATG | 1 cut(s) | 527 |
| Hin6I | GCGC | 2 cut(s) | 220, 636 |
| HinP1I | GCGC | 2 cut(s) | 220, 636 |
| HincII | GTYRAC | 2 cut(s) | 193, 562 |
| HindII | GTYRAC | 2 cut(s) | 193, 562 |
| HinfI | GANTC | 4 cut(s) | 158, 214, 340, 389 |
| HpaII | CCGG | 3 cut(s) | 535, 851, 921 |
| HphI | GGTGA | 5 cut(s) | 100, 295, 349, 466, 737 |
| Hpy166II | GTNNAC | 3 cut(s) | 193, 277, 562 |
| Hpy188I | TCNGA | 2 cut(s) | 330, 506 |
| Hpy188III | TCNNGA | 6 cut(s) | 38, 278, 815, 897, 1045, 1157 |
| Hpy8I | GTNNAC | 3 cut(s) | 193, 277, 562 |
| Hpy99I | CGWCG | 3 cut(s) | 84, 839, 1148 |
| HpyCH4III | ACNGT | 3 cut(s) | 182, 749, 910 |
| HpyCH4IV | ACGT | 4 cut(s) | 82, 555, 863, 1179 |
| HpyCH4V | TGCA | 2 cut(s) | 75, 658 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 206, 616, 664, 784, 817, 826, 976, 1124 |
| HpyF3I | CTNAG | 5 cut(s) | 344, 714, 813, 1005, 1022 |
| HpySE526I | ACGT | 4 cut(s) | 82, 555, 863, 1179 |
| Hsp92I | GRCGYC | 1 cut(s) | 636 |
| Hsp92II | CATG | 1 cut(s) | 527 |
| HspAI | GCGC | 2 cut(s) | 220, 636 |
| KasI | GGCGCC | 1 cut(s) | 635 |
| Kzo9I | GATC | 2 cut(s) | 330, 1153 |
| LmnI | GCTCC | 4 cut(s) | 763, 775, 817, 1196 |
| Lsp1109I | GCAGC | 3 cut(s) | 796, 1001, 1130 |
| LweI | GCATC | 6 cut(s) | 597, 628, 899, 1001, 1114, 1140 |
| MaeI | CTAG | 8 cut(s) | 48, 95, 99, 114, 675, 705, 779, 1223 |
| MaeII | ACGT | 4 cut(s) | 82, 555, 863, 1179 |
| MaeIII | GTNAC | 4 cut(s) | 176, 301, 904, 1112 |
| MalI | GATC | 2 cut(s) | 332, 1155 |
| MbiI | CCGCTC | 2 cut(s) | 713, 1168 |
| MboI | GATC | 2 cut(s) | 330, 1153 |
| MboII | GAAGA | 4 cut(s) | 161, 280, 885, 890 |
| MfeI | CAATTG | 2 cut(s) | 948, 1149 |
| MflI | RGATCY | 1 cut(s) | 330 |
| MhlI | GDGCHC | 7 cut(s) | 285, 364, 469, 541, 741, 756, 957 |
| MluCI | AATT | 6 cut(s) | 368, 379, 473, 509, 948, 1149 |
| Mly113I | GGCGCC | 1 cut(s) | 636 |
| MlyI | GAGTC | 3 cut(s) | 167, 208, 383 |
| MmeI | TCCRAC | 2 cut(s) | 251, 468 |
| MseI | TTAA | 2 cut(s) | 483, 1215 |
| MspA1I | CMGCKG | 2 cut(s) | 1021, 1121 |
| MspI | CCGG | 3 cut(s) | 535, 851, 921 |
| MunI | CAATTG | 2 cut(s) | 948, 1149 |
| MvaI | CCWGG | 8 cut(s) | 7, 166, 403, 516, 587, 669, 986, 1190 |
| MvnI | CGCG | 1 cut(s) | 898 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 206, 616, 664, 784, 817, 826, 976, 1124 |
| NarI | GGCGCC | 1 cut(s) | 636 |
| NciI | CCSGG | 4 cut(s) | 536, 851, 852, 922 |
| NdeII | GATC | 2 cut(s) | 330, 1153 |
| NheI | GCTAGC | 1 cut(s) | 94 |
| NlaIII | CATG | 1 cut(s) | 527 |
| NlaIV | GGNNCC | 8 cut(s) | 170, 363, 468, 637, 666, 819, 956, 1160 |
| NmeAIII | GCCGAG | 1 cut(s) | 849 |
| NmuCI | GTSAC | 4 cut(s) | 176, 301, 904, 1112 |
| NruI | TCGCGA | 1 cut(s) | 898 |
| NspI | RCATGY | 1 cut(s) | 527 |
| PaqCI | CACCTGC | 2 cut(s) | 80, 757 |
| PasI | CCCWGGG | 1 cut(s) | 6 |
| PceI | AGGCCT | 1 cut(s) | 829 |
| PciI | ACATGT | 1 cut(s) | 523 |
| PfeI | GAWTC | 1 cut(s) | 340 |
| PfoI | TCCNGGA | 1 cut(s) | 514 |
| PkrI | GCNGC | 8 cut(s) | 618, 786, 822, 860, 991, 1092, 1120, 1232 |
| PleI | GAGTC | 3 cut(s) | 166, 208, 383 |
| PluTI | GGCGCC | 1 cut(s) | 639 |
| PpsI | GAGTC | 3 cut(s) | 166, 208, 383 |
| Ppu21I | YACGTR | 1 cut(s) | 1180 |
| PpuMI | RGGWCCY | 2 cut(s) | 169, 1159 |
| PscI | ACATGT | 1 cut(s) | 523 |
| Psp1406I | AACGTT | 1 cut(s) | 555 |
| Psp5II | RGGWCCY | 2 cut(s) | 169, 1159 |
| Psp6I | CCWGG | 8 cut(s) | 5, 164, 401, 514, 585, 667, 984, 1188 |
| PspGI | CCWGG | 8 cut(s) | 5, 164, 401, 514, 585, 667, 984, 1188 |
| PspN4I | GGNNCC | 8 cut(s) | 170, 363, 468, 637, 666, 819, 956, 1160 |
| PspPI | GGNCC | 6 cut(s) | 169, 665, 671, 684, 929, 1159 |
| PspPPI | RGGWCCY | 2 cut(s) | 169, 1159 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 965, 997 |
| PsuI | RGATCY | 1 cut(s) | 330 |
| PvuII | CAGCTG | 1 cut(s) | 1021 |
| RruI | TCGCGA | 1 cut(s) | 898 |
| RsaI | GTAC | 4 cut(s) | 184, 528, 709, 974 |
| RsaNI | GTAC | 4 cut(s) | 183, 527, 708, 973 |
| SaqAI | TTAA | 2 cut(s) | 483, 1215 |
| SatI | GCNGC | 8 cut(s) | 617, 785, 821, 859, 990, 1091, 1119, 1231 |
| Sau3AI | GATC | 2 cut(s) | 330, 1153 |
| Sau96I | GGNCC | 6 cut(s) | 169, 665, 671, 684, 929, 1159 |
| SchI | GAGTC | 3 cut(s) | 167, 208, 383 |
| SduI | GDGCHC | 7 cut(s) | 285, 364, 469, 541, 741, 756, 957 |
| SfaNI | GCATC | 6 cut(s) | 597, 628, 899, 1001, 1114, 1140 |
| SfoI | GGCGCC | 1 cut(s) | 637 |
| SinI | GGWCC | 2 cut(s) | 169, 1159 |
| SmaI | CCCGGG | 1 cut(s) | 852 |
| SmlI | CTYRAG | 1 cut(s) | 1163 |
| SmoI | CTYRAG | 1 cut(s) | 1163 |
| SpeI | ACTAGT | 2 cut(s) | 113, 1222 |
| Sse9I | AATT | 6 cut(s) | 368, 379, 473, 509, 948, 1149 |
| SseBI | AGGCCT | 1 cut(s) | 829 |
| SspDI | GGCGCC | 1 cut(s) | 635 |
| SspMI | CTAG | 8 cut(s) | 48, 95, 99, 114, 675, 705, 779, 1223 |
| StuI | AGGCCT | 1 cut(s) | 829 |
| StyI | CCWWGG | 3 cut(s) | 429, 674, 1101 |
| TaaI | ACNGT | 3 cut(s) | 182, 749, 910 |
| TaiI | ACGT | 4 cut(s) | 85, 558, 866, 1182 |
| TaqI | TCGA | 2 cut(s) | 392, 837 |
| TasI | AATT | 6 cut(s) | 368, 379, 473, 509, 948, 1149 |
| TatI | WGTACW | 1 cut(s) | 526 |
| TauI | GCSGC | 4 cut(s) | 619, 823, 861, 1093 |
| TfiI | GAWTC | 1 cut(s) | 340 |
| Tru1I | TTAA | 2 cut(s) | 483, 1215 |
| Tru9I | TTAA | 2 cut(s) | 483, 1215 |
| TscAI | CASTG | 1 cut(s) | 694 |
| TseFI | GTSAC | 4 cut(s) | 176, 301, 904, 1112 |
| TseI | GCWGC | 4 cut(s) | 784, 989, 1118, 1230 |
| Tsp45I | GTSAC | 4 cut(s) | 176, 301, 904, 1112 |
| TspDTI | ATGAA | 1 cut(s) | 474 |
| TspGWI | ACGGA | 1 cut(s) | 952 |
| TspMI | CCCGGG | 1 cut(s) | 850 |
| TspRI | CASTG | 1 cut(s) | 694 |
| VpaK11BI | GGWCC | 2 cut(s) | 169, 1159 |
| XapI | RAATTY | 3 cut(s) | 379, 473, 509 |
| XceI | RCATGY | 1 cut(s) | 527 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 256 |
| XmaI | CCCGGG | 1 cut(s) | 850 |
| XmaJI | CCTAGG | 1 cut(s) | 674 |
| XspI | CTAG | 8 cut(s) | 48, 95, 99, 114, 675, 705, 779, 1223 |