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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1014 |
| AccB1I | GGYRCC | 2 cut(s) | 523, 1555 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 588 |
| AccBSI | CCGCTC | 4 cut(s) | 369, 884, 1085, 1645 |
| AccI | GTMKAC | 2 cut(s) | 896, 1002 |
| AccII | CGCG | 9 cut(s) | 62, 924, 1056, 1326, 1393, 1595, 1678, 1899, 2140 |
| AccIII | TCCGGA | 1 cut(s) | 190 |
| AclI | AACGTT | 1 cut(s) | 306 |
| AclWI | GGATC | 6 cut(s) | 941, 1086, 1935, 2017, 2050, 2093 |
| AcoI | YGGCCR | 1 cut(s) | 477 |
| AcsI | RAATTY | 1 cut(s) | 1096 |
| AcuI | CTGAAG | 3 cut(s) | 410, 1690, 2097 |
| AcyI | GRCGYC | 3 cut(s) | 1556, 1760, 1893 |
| AfaI | GTAC | 5 cut(s) | 373, 818, 1115, 1592, 2043 |
| AfeI | AGCGCT | 1 cut(s) | 245 |
| AflIII | ACRYGT | 2 cut(s) | 48, 585 |
| AgsI | TTSAA | 2 cut(s) | 1028, 1094 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 769 |
| AjiI | CACGTC | 1 cut(s) | 49 |
| AjnI | CCWGG | 8 cut(s) | 200, 327, 1319, 1373, 2058, 2063, 2081, 2185 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1607, 1639 |
| AluBI | AGCT | 7 cut(s) | 424, 745, 1523, 1710, 1789, 1906, 2111 |
| AluI | AGCT | 7 cut(s) | 424, 745, 1523, 1710, 1789, 1906, 2111 |
| Alw21I | GWGCWC | 2 cut(s) | 486, 1791 |
| Alw26I | GTCTC | 6 cut(s) | 1151, 1218, 1352, 1814, 1834, 1954 |
| Alw44I | GTGCAC | 1 cut(s) | 482 |
| AlwI | GGATC | 6 cut(s) | 941, 1086, 1935, 2017, 2050, 2093 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 942 |
| Aor13HI | TCCGGA | 1 cut(s) | 190 |
| Aor51HI | AGCGCT | 1 cut(s) | 245 |
| AoxI | GGCC | 9 cut(s) | 477, 489, 641, 842, 1107, 1512, 1830, 1975, 2061 |
| ApaLI | GTGCAC | 1 cut(s) | 482 |
| ApoI | RAATTY | 1 cut(s) | 1096 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 548, 580 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 660 |
| AspS9I | GGNCC | 8 cut(s) | 641, 786, 842, 1328, 1404, 1513, 1852, 2162 |
| AsuC2I | CCSGG | 7 cut(s) | 40, 411, 464, 1038, 1154, 1774, 2101 |
| AsuHPI | GGTGA | 8 cut(s) | 221, 430, 1159, 1204, 1208, 1391, 1408, 2060 |
| AsuNHI | GCTAGC | 1 cut(s) | 5 |
| AvaII | GGWCC | 5 cut(s) | 786, 1328, 1404, 1852, 2162 |
| BaeGI | GKGCMC | 2 cut(s) | 486, 528 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 363, 396 |
| BanI | GGYRCC | 2 cut(s) | 523, 1555 |
| BanII | GRGCYC | 3 cut(s) | 1497, 1791, 2183 |
| BauI | CACGAG | 1 cut(s) | 485 |
| BbsI | GAAGAC | 1 cut(s) | 1346 |
| Bbv12I | GWGCWC | 2 cut(s) | 486, 1791 |
| BbvCI | CCTCAGC | 1 cut(s) | 2171 |
| BccI | CCATC | 9 cut(s) | 62, 161, 326, 1069, 1189, 1223, 1571, 1641, 2043 |
| BceAI | ACGGC | 4 cut(s) | 326, 464, 829, 1701 |
| BciT130I | CCWGG | 8 cut(s) | 202, 329, 1321, 1375, 2060, 2065, 2083, 2187 |
| BcnI | CCSGG | 7 cut(s) | 40, 411, 464, 1038, 1154, 1774, 2101 |
| BcoDI | GTCTC | 6 cut(s) | 1151, 1218, 1352, 1814, 1834, 1954 |
| BfaI | CTAG | 4 cut(s) | 6, 131, 825, 1931 |
| BfmI | CTRYAG | 3 cut(s) | 146, 801, 1290 |
| BfoI | RGCGCY | 6 cut(s) | 247, 625, 694, 740, 1430, 1559 |
| BfuAI | ACCTGC | 1 cut(s) | 1014 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 2069, 2187 |
| BglII | AGATCT | 1 cut(s) | 573 |
| BlpI | GCTNAGC | 2 cut(s) | 56, 2177 |
| Bme18I | GGWCC | 5 cut(s) | 786, 1328, 1404, 1852, 2162 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 769 |
| BmgBI | CACGTC | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 8 cut(s) | 641, 786, 842, 1328, 1404, 1513, 1852, 2162 |
| BmsI | GCATC | 4 cut(s) | 1191, 1299, 1535, 2116 |
| BmtI | GCTAGC | 1 cut(s) | 9 |
| BpiI | GAAGAC | 1 cut(s) | 1346 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 498, 530 |
| BpmI | CTGGAG | 4 cut(s) | 311, 1451, 1796, 2175 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1790, 2171 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 56, 2177 |
| BpuEI | CTTGAG | 1 cut(s) | 739 |
| BpuMI | CCSGG | 7 cut(s) | 40, 411, 464, 1038, 1154, 1774, 2101 |
| BsaHI | GRCGYC | 3 cut(s) | 1556, 1760, 1893 |
| BsaI | GGTCTC | 1 cut(s) | 1814 |
| BsaWI | WCCGGW | 3 cut(s) | 190, 402, 1186 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 355, 385, 1097, 1127, 1607, 1637 |
| Bse118I | RCCGGY | 2 cut(s) | 726, 1443 |
| Bse1I | ACTGG | 7 cut(s) | 988, 1002, 1174, 1210, 1848, 1869, 2029 |
| BseAI | TCCGGA | 1 cut(s) | 190 |
| BseBI | CCWGG | 8 cut(s) | 202, 329, 1321, 1375, 2060, 2065, 2083, 2187 |
| BseGI | GGATG | 4 cut(s) | 73, 153, 337, 1314 |
| BseMII | CTCAG | 6 cut(s) | 70, 749, 1271, 1804, 2162, 2168 |
| BseNI | ACTGG | 7 cut(s) | 988, 1002, 1174, 1210, 1848, 1869, 2029 |
| BseRI | GAGGAG | 3 cut(s) | 379, 1982, 1985 |
| BseSI | GKGCMC | 2 cut(s) | 486, 528 |
| BseX3I | CGGCCG | 1 cut(s) | 477 |
| BseYI | CCCAGC | 3 cut(s) | 278, 1648, 2107 |
| BsgI | GTGCAG | 2 cut(s) | 1265, 1367 |
| Bsh1236I | CGCG | 9 cut(s) | 62, 924, 1056, 1326, 1393, 1595, 1678, 1899, 2140 |
| Bsh1285I | CGRYCG | 1 cut(s) | 480 |
| BshFI | GGCC | 9 cut(s) | 479, 491, 643, 844, 1109, 1514, 1832, 1977, 2063 |
| BshNI | GGYRCC | 2 cut(s) | 523, 1555 |
| BsiEI | CGRYCG | 1 cut(s) | 480 |
| BsiHKAI | GWGCWC | 2 cut(s) | 486, 1791 |
| BslFI | GGGAC | 7 cut(s) | 349, 564, 776, 799, 900, 1267, 1875 |
| BsmAI | GTCTC | 6 cut(s) | 1151, 1218, 1352, 1814, 1834, 1954 |
| BsmBI | CGTCTC | 1 cut(s) | 1151 |
| BsmFI | GGGAC | 7 cut(s) | 349, 564, 776, 799, 900, 1267, 1875 |
| BsmI | GAATGC | 1 cut(s) | 1915 |
| BsnI | GGCC | 9 cut(s) | 479, 491, 643, 844, 1109, 1514, 1832, 1977, 2063 |
| Bso31I | GGTCTC | 1 cut(s) | 1814 |
| Bsp1286I | GDGCHC | 5 cut(s) | 486, 528, 1497, 1791, 2183 |
| Bsp13I | TCCGGA | 1 cut(s) | 190 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 56, 2177 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| Bsp68I | TCGCGA | 1 cut(s) | 1056 |
| BspANI | GGCC | 9 cut(s) | 479, 491, 643, 844, 1109, 1514, 1832, 1977, 2063 |
| BspCNI | CTCAG | 6 cut(s) | 69, 750, 1270, 1803, 2163, 2169 |
| BspEI | TCCGGA | 1 cut(s) | 190 |
| BspFNI | CGCG | 9 cut(s) | 62, 924, 1056, 1326, 1393, 1595, 1678, 1899, 2140 |
| BspHI | TCATGA | 1 cut(s) | 1602 |
| BspMI | ACCTGC | 1 cut(s) | 1014 |
| BspOI | GCTAGC | 1 cut(s) | 9 |
| BspPI | GGATC | 6 cut(s) | 941, 1086, 1935, 2017, 2050, 2093 |
| BspQI | GCTCTTC | 1 cut(s) | 1779 |
| BspT107I | GGYRCC | 2 cut(s) | 523, 1555 |
| BspTNI | GGTCTC | 1 cut(s) | 1814 |
| BsrBI | CCGCTC | 4 cut(s) | 369, 884, 1085, 1645 |
| BsrFI | RCCGGY | 2 cut(s) | 726, 1443 |
| BsrI | ACTGG | 7 cut(s) | 988, 1002, 1174, 1210, 1848, 1869, 2029 |
| BssAI | RCCGGY | 2 cut(s) | 726, 1443 |
| BssNAI | GTATAC | 1 cut(s) | 897 |
| BssNI | GRCGYC | 3 cut(s) | 1556, 1760, 1893 |
| BssSI | CACGAG | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 5 cut(s) | 171, 502, 694, 1219, 1833 |
| Bst1107I | GTATAC | 1 cut(s) | 897 |
| Bst2BI | CACGAG | 1 cut(s) | 485 |
| Bst2UI | CCWGG | 8 cut(s) | 202, 329, 1321, 1375, 2060, 2065, 2083, 2187 |
| Bst4CI | ACNGT | 6 cut(s) | 649, 809, 1144, 1243, 1285, 1345 |
| Bst6I | CTCTTC | 4 cut(s) | 909, 1464, 1473, 1779 |
| BstACI | GRCGYC | 3 cut(s) | 1556, 1760, 1893 |
| BstDEI | CTNAG | 8 cut(s) | 56, 758, 864, 1257, 1764, 1790, 2171, 2177 |
| BstDSI | CCRYGG | 3 cut(s) | 171, 648, 1897 |
| BstF5I | GGATG | 4 cut(s) | 73, 153, 337, 1314 |
| BstFNI | CGCG | 9 cut(s) | 62, 924, 1056, 1326, 1393, 1595, 1678, 1899, 2140 |
| BstH2I | RGCGCY | 6 cut(s) | 247, 625, 694, 740, 1430, 1559 |
| BstMAI | GTCTC | 6 cut(s) | 1151, 1218, 1352, 1814, 1834, 1954 |
| BstMCI | CGRYCG | 1 cut(s) | 480 |
| BstNI | CCWGG | 8 cut(s) | 202, 329, 1321, 1375, 2060, 2065, 2083, 2187 |
| BstNSI | RCATGY | 2 cut(s) | 589, 2205 |
| BstSFI | CTRYAG | 3 cut(s) | 146, 801, 1290 |
| BstSLI | GKGCMC | 2 cut(s) | 486, 528 |
| BstUI | CGCG | 9 cut(s) | 62, 924, 1056, 1326, 1393, 1595, 1678, 1899, 2140 |
| BstV2I | GAAGAC | 1 cut(s) | 1346 |
| BstX2I | RGATCY | 5 cut(s) | 573, 1927, 2022, 2055, 2085 |
| BstYI | RGATCY | 5 cut(s) | 573, 1927, 2022, 2055, 2085 |
| BstZ17I | GTATAC | 1 cut(s) | 897 |
| BstZI | CGGCCG | 1 cut(s) | 477 |
| BsuRI | GGCC | 9 cut(s) | 479, 491, 643, 844, 1109, 1514, 1832, 1977, 2063 |
| BtgI | CCRYGG | 3 cut(s) | 171, 648, 1897 |
| BtgZI | GCGATG | 3 cut(s) | 620, 1088, 1214 |
| BtrI | CACGTC | 1 cut(s) | 49 |
| BtsCI | GGATG | 4 cut(s) | 73, 153, 337, 1314 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 1545 |
| BtsIMutI | CAGTG | 5 cut(s) | 34, 116, 1545, 1573, 2036 |
| BtuMI | TCGCGA | 1 cut(s) | 1056 |
| BveI | ACCTGC | 1 cut(s) | 1014 |
| CaiI | CAGNNNCTG | 1 cut(s) | 942 |
| CciI | TCATGA | 1 cut(s) | 1602 |
| Cfr10I | RCCGGY | 2 cut(s) | 726, 1443 |
| Cfr13I | GGNCC | 8 cut(s) | 641, 786, 842, 1328, 1404, 1513, 1852, 2162 |
| Cfr42I | CCGCGG | 1 cut(s) | 1900 |
| CseI | GACGC | 8 cut(s) | 80, 176, 913, 1067, 1749, 1901, 2129, 2176 |
| Csp6I | GTAC | 5 cut(s) | 372, 817, 1114, 1591, 2042 |
| CviAII | CATG | 8 cut(s) | 104, 172, 586, 769, 1111, 1603, 2045, 2202 |
| CviQI | GTAC | 5 cut(s) | 372, 817, 1114, 1591, 2042 |
| DdeI | CTNAG | 8 cut(s) | 56, 758, 864, 1257, 1764, 1790, 2171, 2177 |
| DinI | GGCGCC | 1 cut(s) | 1557 |
| DriI | GACNNNNNGTC | 1 cut(s) | 769 |
| EaeI | YGGCCR | 1 cut(s) | 477 |
| EagI | CGGCCG | 1 cut(s) | 477 |
| Eam1104I | CTCTTC | 4 cut(s) | 909, 1464, 1473, 1779 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 769 |
| EarI | CTCTTC | 4 cut(s) | 909, 1464, 1473, 1779 |
| Ecl136II | GAGCTC | 1 cut(s) | 1789 |
| EclXI | CGGCCG | 1 cut(s) | 477 |
| Eco130I | CCWWGG | 5 cut(s) | 171, 502, 694, 1219, 1833 |
| Eco24I | GRGCYC | 3 cut(s) | 1497, 1791, 2183 |
| Eco31I | GGTCTC | 1 cut(s) | 1814 |
| Eco47I | GGWCC | 5 cut(s) | 786, 1328, 1404, 1852, 2162 |
| Eco47III | AGCGCT | 1 cut(s) | 245 |
| Eco52I | CGGCCG | 1 cut(s) | 477 |
| Eco53kI | GAGCTC | 1 cut(s) | 1789 |
| Eco57I | CTGAAG | 3 cut(s) | 410, 1690, 2097 |
| EcoICRI | GAGCTC | 1 cut(s) | 1789 |
| EcoO109I | RGGNCCY | 2 cut(s) | 641, 786 |
| EcoRII | CCWGG | 8 cut(s) | 200, 327, 1319, 1373, 2058, 2063, 2081, 2185 |
| EcoT14I | CCWWGG | 5 cut(s) | 171, 502, 694, 1219, 1833 |
| EcoT38I | GRGCYC | 3 cut(s) | 1497, 1791, 2183 |
| EgeI | GGCGCC | 1 cut(s) | 1557 |
| EheI | GGCGCC | 1 cut(s) | 1557 |
| ErhI | CCWWGG | 5 cut(s) | 171, 502, 694, 1219, 1833 |
| Esp3I | CGTCTC | 1 cut(s) | 1151 |
| FaeI | CATG | 8 cut(s) | 107, 175, 589, 772, 1114, 1606, 2048, 2205 |
| FaqI | GGGAC | 7 cut(s) | 349, 564, 776, 799, 900, 1267, 1875 |
| FatI | CATG | 8 cut(s) | 103, 171, 585, 768, 1110, 1602, 2044, 2201 |
| FblI | GTMKAC | 2 cut(s) | 896, 1002 |
| FokI | GGATG | 4 cut(s) | 80, 140, 344, 1321 |
| FriOI | GRGCYC | 3 cut(s) | 1497, 1791, 2183 |
| FspBI | CTAG | 4 cut(s) | 6, 131, 825, 1931 |
| GsaI | CCCAGC | 3 cut(s) | 282, 1652, 2111 |
| GsuI | CTGGAG | 4 cut(s) | 311, 1451, 1796, 2175 |
| HaeII | RGCGCY | 6 cut(s) | 247, 625, 694, 740, 1430, 1559 |
| HaeIII | GGCC | 9 cut(s) | 479, 491, 643, 844, 1109, 1514, 1832, 1977, 2063 |
| HgaI | GACGC | 8 cut(s) | 80, 176, 913, 1067, 1749, 1901, 2129, 2176 |
| Hin1I | GRCGYC | 3 cut(s) | 1556, 1760, 1893 |
| Hin1II | CATG | 8 cut(s) | 107, 175, 589, 772, 1114, 1606, 2048, 2205 |
| HincII | GTYRAC | 2 cut(s) | 346, 1003 |
| HindII | GTYRAC | 2 cut(s) | 346, 1003 |
| HphI | GGTGA | 8 cut(s) | 221, 430, 1159, 1204, 1208, 1391, 1408, 2060 |
| Hpy166II | GTNNAC | 6 cut(s) | 346, 484, 715, 897, 1003, 1150 |
| Hpy188III | TCNNGA | 8 cut(s) | 191, 751, 1055, 1574, 1603, 1813, 1931, 2154 |
| Hpy8I | GTNNAC | 6 cut(s) | 346, 484, 715, 897, 1003, 1150 |
| Hpy99I | CGWCG | 4 cut(s) | 1061, 1687, 2145, 2170 |
| HpyCH4III | ACNGT | 6 cut(s) | 649, 809, 1144, 1243, 1285, 1345 |
| HpyCH4IV | ACGT | 4 cut(s) | 48, 306, 398, 1160 |
| HpyCH4V | TGCA | 6 cut(s) | 107, 484, 1246, 1348, 1526, 1538 |
| HpyF3I | CTNAG | 8 cut(s) | 56, 758, 864, 1257, 1764, 1790, 2171, 2177 |
| HpySE526I | ACGT | 4 cut(s) | 48, 306, 398, 1160 |
| Hsp92I | GRCGYC | 3 cut(s) | 1556, 1760, 1893 |
| Hsp92II | CATG | 8 cut(s) | 107, 175, 589, 772, 1114, 1606, 2048, 2205 |
| KasI | GGCGCC | 1 cut(s) | 1555 |
| Kpn2I | TCCGGA | 1 cut(s) | 190 |
| KroI | GCCGGC | 2 cut(s) | 726, 1443 |
| KroNI | GCCGGC | 2 cut(s) | 728, 1445 |
| KspI | CCGCGG | 1 cut(s) | 1900 |
| LguI | GCTCTTC | 1 cut(s) | 1779 |
| LmnI | GCTCC | 8 cut(s) | 298, 366, 734, 1025, 1500, 1615, 1995, 2007 |
| LweI | GCATC | 4 cut(s) | 1191, 1299, 1535, 2116 |
| MaeI | CTAG | 4 cut(s) | 6, 131, 825, 1931 |
| MaeII | ACGT | 4 cut(s) | 48, 306, 398, 1160 |
| MaeIII | GTNAC | 8 cut(s) | 166, 236, 379, 508, 993, 1396, 1737, 2048 |
| MbiI | CCGCTC | 4 cut(s) | 369, 884, 1085, 1645 |
| MfeI | CAATTG | 1 cut(s) | 1689 |
| MflI | RGATCY | 5 cut(s) | 573, 1927, 2022, 2055, 2085 |
| MhlI | GDGCHC | 5 cut(s) | 486, 528, 1497, 1791, 2183 |
| MluCI | AATT | 3 cut(s) | 1096, 1689, 2221 |
| Mly113I | GGCGCC | 1 cut(s) | 1556 |
| MlyI | GAGTC | 9 cut(s) | 266, 320, 461, 730, 758, 1249, 1379, 1448, 1571 |
| MmeI | TCCRAC | 4 cut(s) | 895, 1977, 2189, 2198 |
| MroI | TCCGGA | 1 cut(s) | 190 |
| MroNI | GCCGGC | 2 cut(s) | 726, 1443 |
| MroXI | GAANNNNTTC | 1 cut(s) | 660 |
| MseI | TTAA | 2 cut(s) | 858, 1869 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1638 |
| MspA1I | CMGCKG | 7 cut(s) | 278, 296, 520, 1300, 1409, 1858, 1899 |
| MunI | CAATTG | 1 cut(s) | 1689 |
| Mva1269I | GAATGC | 1 cut(s) | 1915 |
| MvaI | CCWGG | 8 cut(s) | 202, 329, 1321, 1375, 2060, 2065, 2083, 2187 |
| MvnI | CGCG | 9 cut(s) | 62, 924, 1056, 1326, 1393, 1595, 1678, 1899, 2140 |
| NaeI | GCCGGC | 2 cut(s) | 728, 1445 |
| NarI | GGCGCC | 1 cut(s) | 1556 |
| NciI | CCSGG | 7 cut(s) | 40, 411, 464, 1038, 1154, 1774, 2101 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NgoMIV | GCCGGC | 2 cut(s) | 726, 1443 |
| NheI | GCTAGC | 1 cut(s) | 5 |
| NlaIII | CATG | 8 cut(s) | 107, 175, 589, 772, 1114, 1606, 2048, 2205 |
| NmeAIII | GCCGAG | 4 cut(s) | 1144, 1489, 1612, 1691 |
| NmuCI | GTSAC | 5 cut(s) | 236, 379, 508, 1396, 2048 |
| NruI | TCGCGA | 1 cut(s) | 1056 |
| NspI | RCATGY | 2 cut(s) | 589, 2205 |
| PagI | TCATGA | 1 cut(s) | 1602 |
| PciI | ACATGT | 1 cut(s) | 585 |
| PciSI | GCTCTTC | 1 cut(s) | 1779 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 92, 184, 1749 |
| PctI | GAATGC | 1 cut(s) | 1915 |
| PdiI | GCCGGC | 2 cut(s) | 728, 1445 |
| PdmI | GAANNNNTTC | 1 cut(s) | 660 |
| PfeI | GAWTC | 4 cut(s) | 35, 83, 457, 754 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 588 |
| PfoI | TCCNGGA | 1 cut(s) | 327 |
| PleI | GAGTC | 9 cut(s) | 266, 319, 460, 729, 758, 1249, 1378, 1448, 1571 |
| PluTI | GGCGCC | 1 cut(s) | 1559 |
| PpsI | GAGTC | 9 cut(s) | 266, 319, 460, 729, 758, 1249, 1378, 1448, 1571 |
| PpuMI | RGGWCCY | 1 cut(s) | 786 |
| PscI | ACATGT | 1 cut(s) | 585 |
| Psp124BI | GAGCTC | 1 cut(s) | 1791 |
| Psp1406I | AACGTT | 1 cut(s) | 306 |
| Psp5II | RGGWCCY | 1 cut(s) | 786 |
| Psp6I | CCWGG | 8 cut(s) | 200, 327, 1319, 1373, 2058, 2063, 2081, 2185 |
| PspFI | CCCAGC | 3 cut(s) | 278, 1648, 2107 |
| PspGI | CCWGG | 8 cut(s) | 200, 327, 1319, 1373, 2058, 2063, 2081, 2185 |
| PspPI | GGNCC | 8 cut(s) | 641, 786, 842, 1328, 1404, 1513, 1852, 2162 |
| PspPPI | RGGWCCY | 1 cut(s) | 786 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1273, 1305 |
| PstNI | CAGNNNCTG | 1 cut(s) | 942 |
| PsuI | RGATCY | 5 cut(s) | 573, 1927, 2022, 2055, 2085 |
| RruI | TCGCGA | 1 cut(s) | 1056 |
| RsaI | GTAC | 5 cut(s) | 373, 818, 1115, 1592, 2043 |
| RsaNI | GTAC | 5 cut(s) | 372, 817, 1114, 1591, 2042 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1638 |
| SacI | GAGCTC | 1 cut(s) | 1791 |
| SacII | CCGCGG | 1 cut(s) | 1900 |
| SalI | GTCGAC | 1 cut(s) | 1001 |
| SapI | GCTCTTC | 1 cut(s) | 1779 |
| SaqAI | TTAA | 2 cut(s) | 858, 1869 |
| Sau96I | GGNCC | 8 cut(s) | 641, 786, 842, 1328, 1404, 1513, 1852, 2162 |
| SchI | GAGTC | 9 cut(s) | 266, 320, 461, 730, 758, 1249, 1379, 1448, 1571 |
| SduI | GDGCHC | 5 cut(s) | 486, 528, 1497, 1791, 2183 |
| SfaNI | GCATC | 4 cut(s) | 1191, 1299, 1535, 2116 |
| SfcI | CTRYAG | 3 cut(s) | 146, 801, 1290 |
| SfoI | GGCGCC | 1 cut(s) | 1557 |
| Sfr303I | CCGCGG | 1 cut(s) | 1900 |
| SgrBI | CCGCGG | 1 cut(s) | 1900 |
| SinI | GGWCC | 5 cut(s) | 786, 1328, 1404, 1852, 2162 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1638 |
| SmlI | CTYRAG | 1 cut(s) | 718 |
| SmoI | CTYRAG | 1 cut(s) | 718 |
| Sse9I | AATT | 3 cut(s) | 1096, 1689, 2221 |
| SspDI | GGCGCC | 1 cut(s) | 1555 |
| SspMI | CTAG | 4 cut(s) | 6, 131, 825, 1931 |
| SstI | GAGCTC | 1 cut(s) | 1791 |
| StyI | CCWWGG | 5 cut(s) | 171, 502, 694, 1219, 1833 |
| TaaI | ACNGT | 6 cut(s) | 649, 809, 1144, 1243, 1285, 1345 |
| TaiI | ACGT | 4 cut(s) | 51, 309, 401, 1163 |
| TaqI | TCGA | 8 cut(s) | 23, 455, 750, 830, 880, 1002, 1081, 1529 |
| TasI | AATT | 3 cut(s) | 1096, 1689, 2221 |
| TfiI | GAWTC | 4 cut(s) | 35, 83, 457, 754 |
| Tru1I | TTAA | 2 cut(s) | 858, 1869 |
| Tru9I | TTAA | 2 cut(s) | 858, 1869 |
| TscAI | CASTG | 5 cut(s) | 34, 123, 1545, 1573, 2036 |
| TseFI | GTSAC | 5 cut(s) | 236, 379, 508, 1396, 2048 |
| Tsp45I | GTSAC | 5 cut(s) | 236, 379, 508, 1396, 2048 |
| TspDTI | ATGAA | 4 cut(s) | 623, 849, 1591, 1956 |
| TspGWI | ACGGA | 3 cut(s) | 84, 1321, 1370 |
| TspRI | CASTG | 5 cut(s) | 34, 123, 1545, 1573, 2036 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 588 |
| VneI | GTGCAC | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 5 cut(s) | 786, 1328, 1404, 1852, 2162 |
| XapI | RAATTY | 1 cut(s) | 1096 |
| XbaI | TCTAGA | 1 cut(s) | 1930 |
| XceI | RCATGY | 2 cut(s) | 589, 2205 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1217, 1570, 1840, 2042 |
| XmiI | GTMKAC | 2 cut(s) | 896, 1002 |
| XmnI | GAANNNNTTC | 1 cut(s) | 660 |
| XspI | CTAG | 4 cut(s) | 6, 131, 825, 1931 |