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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 730, 742 |
| AccII | CGCG | 5 cut(s) | 461, 513, 696, 704, 845 |
| AclWI | GGATC | 2 cut(s) | 798, 817 |
| AcsI | RAATTY | 2 cut(s) | 128, 307 |
| AgsI | TTSAA | 3 cut(s) | 295, 313, 932 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 344 |
| AjiI | CACGTC | 1 cut(s) | 736 |
| AjnI | CCWGG | 1 cut(s) | 22 |
| AluBI | AGCT | 3 cut(s) | 229, 298, 763 |
| AluI | AGCT | 3 cut(s) | 229, 298, 763 |
| Alw21I | GWGCWC | 3 cut(s) | 43, 475, 753 |
| Alw26I | GTCTC | 1 cut(s) | 724 |
| Alw44I | GTGCAC | 1 cut(s) | 39 |
| AlwI | GGATC | 2 cut(s) | 798, 817 |
| Ama87I | CYCGRG | 3 cut(s) | 187, 607, 855 |
| AoxI | GGCC | 4 cut(s) | 244, 288, 604, 611 |
| ApaLI | GTGCAC | 1 cut(s) | 39 |
| ApeKI | GCWGC | 3 cut(s) | 523, 914, 924 |
| ApoI | RAATTY | 2 cut(s) | 128, 307 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 763, 795 |
| AspLEI | GCGC | 5 cut(s) | 161, 178, 461, 667, 693 |
| AspS9I | GGNCC | 7 cut(s) | 244, 288, 338, 559, 605, 611, 640 |
| AsuC2I | CCSGG | 5 cut(s) | 284, 330, 608, 609, 644 |
| AsuHPI | GGTGA | 3 cut(s) | 9, 77, 449 |
| AvaI | CYCGRG | 3 cut(s) | 187, 607, 855 |
| AvaII | GGWCC | 3 cut(s) | 338, 559, 640 |
| BaeGI | GKGCMC | 1 cut(s) | 43 |
| BanII | GRGCYC | 1 cut(s) | 589 |
| BauI | CACGAG | 1 cut(s) | 42 |
| Bbv12I | GWGCWC | 3 cut(s) | 43, 475, 753 |
| BbvI | GCAGC | 3 cut(s) | 535, 901, 936 |
| BccI | CCATC | 5 cut(s) | 149, 356, 382, 458, 573 |
| BceAI | ACGGC | 3 cut(s) | 218, 467, 691 |
| BciT130I | CCWGG | 1 cut(s) | 24 |
| BcnI | CCSGG | 5 cut(s) | 284, 330, 608, 609, 644 |
| BcoDI | GTCTC | 1 cut(s) | 724 |
| BfaI | CTAG | 1 cut(s) | 764 |
| BfoI | RGCGCY | 2 cut(s) | 162, 179 |
| BlpI | GCTNAGC | 1 cut(s) | 759 |
| Bme1390I | CCNGG | 6 cut(s) | 24, 284, 330, 608, 609, 644 |
| Bme18I | GGWCC | 3 cut(s) | 338, 559, 640 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 344 |
| BmeT110I | CYCGRG | 3 cut(s) | 187, 607, 855 |
| BmgBI | CACGTC | 1 cut(s) | 736 |
| BmgT120I | GGNCC | 7 cut(s) | 244, 288, 338, 559, 605, 611, 640 |
| BmiI | GGNNCC | 6 cut(s) | 289, 339, 421, 560, 612, 642 |
| BmrFI | CCNGG | 6 cut(s) | 24, 284, 330, 608, 609, 644 |
| BmsI | GCATC | 5 cut(s) | 242, 533, 622, 678, 688 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 759 |
| BpuMI | CCSGG | 5 cut(s) | 284, 330, 608, 609, 644 |
| BsaI | GGTCTC | 1 cut(s) | 724 |
| BsaJI | CCNNGG | 9 cut(s) | 59, 200, 247, 283, 607, 608, 636, 702, 856 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 608, 638, 863, 889, 893, 919 |
| Bse118I | RCCGGY | 1 cut(s) | 917 |
| Bse3DI | GCAATG | 1 cut(s) | 442 |
| BseBI | CCWGG | 1 cut(s) | 24 |
| BseDI | CCNNGG | 9 cut(s) | 59, 200, 247, 283, 607, 608, 636, 702, 856 |
| BseGI | GGATG | 5 cut(s) | 257, 367, 469, 637, 659 |
| BseMI | GCAATG | 1 cut(s) | 442 |
| BseRI | GAGGAG | 2 cut(s) | 907, 910 |
| BseSI | GKGCMC | 1 cut(s) | 43 |
| BseXI | GCAGC | 3 cut(s) | 535, 901, 936 |
| Bsh1236I | CGCG | 5 cut(s) | 461, 513, 696, 704, 845 |
| Bsh1285I | CGRYCG | 2 cut(s) | 262, 541 |
| BshFI | GGCC | 4 cut(s) | 246, 290, 606, 613 |
| BsiEI | CGRYCG | 2 cut(s) | 262, 541 |
| BsiHKAI | GWGCWC | 3 cut(s) | 43, 475, 753 |
| BsiHKCI | CYCGRG | 3 cut(s) | 187, 607, 855 |
| BsiSI | CCGG | 6 cut(s) | 283, 330, 608, 614, 644, 918 |
| BslFI | GGGAC | 2 cut(s) | 351, 746 |
| BsmAI | GTCTC | 1 cut(s) | 724 |
| BsmFI | GGGAC | 2 cut(s) | 351, 746 |
| BsmI | GAATGC | 1 cut(s) | 688 |
| BsnI | GGCC | 4 cut(s) | 246, 290, 606, 613 |
| Bso31I | GGTCTC | 1 cut(s) | 724 |
| BsoBI | CYCGRG | 3 cut(s) | 187, 607, 855 |
| Bsp1286I | GDGCHC | 4 cut(s) | 43, 475, 589, 753 |
| Bsp143I | GATC | 3 cut(s) | 49, 790, 822 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 759 |
| BspANI | GGCC | 4 cut(s) | 246, 290, 606, 613 |
| BspFNI | CGCG | 5 cut(s) | 461, 513, 696, 704, 845 |
| BspLI | GGNNCC | 6 cut(s) | 289, 339, 421, 560, 612, 642 |
| BspPI | GGATC | 2 cut(s) | 798, 817 |
| BspTNI | GGTCTC | 1 cut(s) | 724 |
| BsrBI | CCGCTC | 2 cut(s) | 730, 742 |
| BsrDI | GCAATG | 1 cut(s) | 442 |
| BsrFI | RCCGGY | 1 cut(s) | 917 |
| BssAI | RCCGGY | 1 cut(s) | 917 |
| BssECI | CCNNGG | 9 cut(s) | 59, 200, 247, 283, 607, 608, 636, 702, 856 |
| BssMI | GATC | 3 cut(s) | 49, 790, 822 |
| BssSI | CACGAG | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 2 cut(s) | 59, 247 |
| Bst2BI | CACGAG | 1 cut(s) | 42 |
| Bst2UI | CCWGG | 1 cut(s) | 24 |
| Bst4CI | ACNGT | 3 cut(s) | 357, 602, 905 |
| Bst6I | CTCTTC | 1 cut(s) | 512 |
| BstC8I | GCNNGC | 5 cut(s) | 215, 475, 548, 580, 919 |
| BstDEI | CTNAG | 1 cut(s) | 759 |
| BstDSI | CCRYGG | 2 cut(s) | 200, 702 |
| BstEII | GGTNACC | 1 cut(s) | 437 |
| BstF5I | GGATG | 5 cut(s) | 257, 367, 469, 637, 659 |
| BstFNI | CGCG | 5 cut(s) | 461, 513, 696, 704, 845 |
| BstH2I | RGCGCY | 2 cut(s) | 162, 179 |
| BstHHI | GCGC | 5 cut(s) | 161, 178, 461, 667, 693 |
| BstKTI | GATC | 3 cut(s) | 52, 793, 825 |
| BstMAI | GTCTC | 1 cut(s) | 724 |
| BstMBI | GATC | 3 cut(s) | 49, 790, 822 |
| BstMCI | CGRYCG | 2 cut(s) | 262, 541 |
| BstNI | CCWGG | 1 cut(s) | 24 |
| BstPI | GGTNACC | 1 cut(s) | 437 |
| BstSCI | CCNGG | 6 cut(s) | 22, 282, 328, 606, 607, 642 |
| BstSLI | GKGCMC | 1 cut(s) | 43 |
| BstUI | CGCG | 5 cut(s) | 461, 513, 696, 704, 845 |
| BstV1I | GCAGC | 3 cut(s) | 535, 901, 936 |
| BstX2I | RGATCY | 1 cut(s) | 822 |
| BstYI | RGATCY | 1 cut(s) | 822 |
| BsuRI | GGCC | 4 cut(s) | 246, 290, 606, 613 |
| BtgI | CCRYGG | 2 cut(s) | 200, 702 |
| BtgZI | GCGATG | 3 cut(s) | 168, 701, 711 |
| BtrI | CACGTC | 1 cut(s) | 736 |
| BtsCI | GGATG | 5 cut(s) | 257, 367, 469, 637, 659 |
| Cac8I | GCNNGC | 5 cut(s) | 215, 475, 548, 580, 919 |
| CfoI | GCGC | 5 cut(s) | 161, 178, 461, 667, 693 |
| Cfr10I | RCCGGY | 1 cut(s) | 917 |
| Cfr13I | GGNCC | 7 cut(s) | 244, 288, 338, 559, 605, 611, 640 |
| Cfr42I | CCGCGG | 1 cut(s) | 705 |
| Cfr9I | CCCGGG | 1 cut(s) | 607 |
| CseI | GACGC | 2 cut(s) | 181, 702 |
| CsiI | ACCWGGT | 1 cut(s) | 22 |
| DdeI | CTNAG | 1 cut(s) | 759 |
| DpnI | GATC | 3 cut(s) | 51, 792, 824 |
| DpnII | GATC | 3 cut(s) | 49, 790, 822 |
| DriI | GACNNNNNGTC | 1 cut(s) | 344 |
| Eam1104I | CTCTTC | 1 cut(s) | 512 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 344 |
| EarI | CTCTTC | 1 cut(s) | 512 |
| EciI | GGCGGA | 7 cut(s) | 220, 468, 551, 644, 829, 841, 884 |
| Eco130I | CCWWGG | 2 cut(s) | 59, 247 |
| Eco24I | GRGCYC | 1 cut(s) | 589 |
| Eco31I | GGTCTC | 1 cut(s) | 724 |
| Eco47I | GGWCC | 3 cut(s) | 338, 559, 640 |
| Eco88I | CYCGRG | 3 cut(s) | 187, 607, 855 |
| Eco91I | GGTNACC | 1 cut(s) | 437 |
| EcoO109I | RGGNCCY | 3 cut(s) | 288, 338, 640 |
| EcoO65I | GGTNACC | 1 cut(s) | 437 |
| EcoRII | CCWGG | 1 cut(s) | 22 |
| EcoT14I | CCWWGG | 2 cut(s) | 59, 247 |
| EcoT38I | GRGCYC | 1 cut(s) | 589 |
| ErhI | CCWWGG | 2 cut(s) | 59, 247 |
| FaiI | YATR | 6 cut(s) | 142, 173, 237, 323, 777, 949 |
| FaqI | GGGAC | 2 cut(s) | 351, 746 |
| FauI | CCCGC | 7 cut(s) | 326, 440, 487, 506, 697, 723, 825 |
| FokI | GGATG | 5 cut(s) | 264, 374, 476, 644, 666 |
| FriOI | GRGCYC | 1 cut(s) | 589 |
| FspBI | CTAG | 1 cut(s) | 764 |
| GlaI | GCGC | 5 cut(s) | 160, 177, 460, 666, 692 |
| HaeII | RGCGCY | 2 cut(s) | 162, 179 |
| HaeIII | GGCC | 4 cut(s) | 246, 290, 606, 613 |
| HapII | CCGG | 6 cut(s) | 283, 330, 608, 614, 644, 918 |
| HgaI | GACGC | 2 cut(s) | 181, 702 |
| HhaI | GCGC | 5 cut(s) | 161, 178, 461, 667, 693 |
| Hin6I | GCGC | 5 cut(s) | 159, 176, 459, 665, 691 |
| HinP1I | GCGC | 5 cut(s) | 159, 176, 459, 665, 691 |
| HinfI | GANTC | 4 cut(s) | 268, 274, 317, 836 |
| HpaII | CCGG | 6 cut(s) | 283, 330, 608, 614, 644, 918 |
| HphI | GGTGA | 3 cut(s) | 9, 77, 449 |
| Hpy166II | GTNNAC | 2 cut(s) | 17, 41 |
| Hpy188I | TCNGA | 3 cut(s) | 273, 361, 570 |
| Hpy188III | TCNNGA | 1 cut(s) | 304 |
| Hpy8I | GTNNAC | 2 cut(s) | 17, 41 |
| Hpy99I | CGWCG | 9 cut(s) | 15, 361, 488, 491, 602, 674, 677, 718, 944 |
| HpyCH4III | ACNGT | 3 cut(s) | 357, 602, 905 |
| HpyCH4IV | ACGT | 2 cut(s) | 735, 753 |
| HpyCH4V | TGCA | 2 cut(s) | 41, 217 |
| HpyF3I | CTNAG | 1 cut(s) | 759 |
| HpySE526I | ACGT | 2 cut(s) | 735, 753 |
| HspAI | GCGC | 5 cut(s) | 159, 176, 459, 665, 691 |
| KroI | GCCGGC | 1 cut(s) | 917 |
| KroNI | GCCGGC | 1 cut(s) | 919 |
| KspI | CCGCGG | 1 cut(s) | 705 |
| Kzo9I | GATC | 3 cut(s) | 49, 790, 822 |
| LmnI | GCTCC | 2 cut(s) | 425, 739 |
| Lsp1109I | GCAGC | 3 cut(s) | 535, 901, 936 |
| LweI | GCATC | 5 cut(s) | 242, 533, 622, 678, 688 |
| MabI | ACCWGGT | 1 cut(s) | 22 |
| MaeI | CTAG | 1 cut(s) | 764 |
| MaeII | ACGT | 2 cut(s) | 735, 753 |
| MaeIII | GTNAC | 4 cut(s) | 65, 437, 493, 505 |
| MalI | GATC | 3 cut(s) | 51, 792, 824 |
| MbiI | CCGCTC | 2 cut(s) | 730, 742 |
| MboI | GATC | 3 cut(s) | 49, 790, 822 |
| MboII | GAAGA | 4 cut(s) | 44, 80, 529, 583 |
| MflI | RGATCY | 1 cut(s) | 822 |
| MhlI | GDGCHC | 4 cut(s) | 43, 475, 589, 753 |
| MluCI | AATT | 3 cut(s) | 128, 164, 307 |
| MlyI | GAGTC | 2 cut(s) | 283, 845 |
| MmeI | TCCRAC | 4 cut(s) | 220, 339, 451, 869 |
| MroNI | GCCGGC | 1 cut(s) | 917 |
| MseI | TTAA | 1 cut(s) | 410 |
| MspA1I | CMGCKG | 1 cut(s) | 704 |
| MspI | CCGG | 6 cut(s) | 283, 330, 608, 614, 644, 918 |
| MspR9I | CCNGG | 6 cut(s) | 24, 284, 330, 608, 609, 644 |
| Mva1269I | GAATGC | 1 cut(s) | 688 |
| MvaI | CCWGG | 1 cut(s) | 24 |
| MvnI | CGCG | 5 cut(s) | 461, 513, 696, 704, 845 |
| NaeI | GCCGGC | 1 cut(s) | 919 |
| NciI | CCSGG | 5 cut(s) | 284, 330, 608, 609, 644 |
| NdeII | GATC | 3 cut(s) | 49, 790, 822 |
| NgoMIV | GCCGGC | 1 cut(s) | 917 |
| NlaIV | GGNNCC | 6 cut(s) | 289, 339, 421, 560, 612, 642 |
| NmeAIII | GCCGAG | 2 cut(s) | 608, 661 |
| NmuCI | GTSAC | 3 cut(s) | 65, 437, 493 |
| PaeR7I | CTCGAG | 1 cut(s) | 187 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 189, 675 |
| PctI | GAATGC | 1 cut(s) | 688 |
| PdiI | GCCGGC | 1 cut(s) | 919 |
| PfeI | GAWTC | 2 cut(s) | 268, 317 |
| PflFI | GACNNNGTC | 1 cut(s) | 777 |
| PleI | GAGTC | 2 cut(s) | 282, 844 |
| PpsI | GAGTC | 2 cut(s) | 282, 844 |
| PpuMI | RGGWCCY | 2 cut(s) | 338, 640 |
| Psp5II | RGGWCCY | 2 cut(s) | 338, 640 |
| Psp6I | CCWGG | 1 cut(s) | 22 |
| PspEI | GGTNACC | 1 cut(s) | 437 |
| PspGI | CCWGG | 1 cut(s) | 22 |
| PspN4I | GGNNCC | 6 cut(s) | 289, 339, 421, 560, 612, 642 |
| PspPI | GGNCC | 7 cut(s) | 244, 288, 338, 559, 605, 611, 640 |
| PspPPI | RGGWCCY | 2 cut(s) | 338, 640 |
| PspXI | VCTCGAGB | 1 cut(s) | 187 |
| PsuI | RGATCY | 1 cut(s) | 822 |
| PsyI | GACNNNGTC | 1 cut(s) | 777 |
| SacII | CCGCGG | 1 cut(s) | 705 |
| SaqAI | TTAA | 1 cut(s) | 410 |
| Sau3AI | GATC | 3 cut(s) | 49, 790, 822 |
| Sau96I | GGNCC | 7 cut(s) | 244, 288, 338, 559, 605, 611, 640 |
| SchI | GAGTC | 2 cut(s) | 283, 845 |
| ScrFI | CCNGG | 6 cut(s) | 24, 284, 330, 608, 609, 644 |
| SduI | GDGCHC | 4 cut(s) | 43, 475, 589, 753 |
| SexAI | ACCWGGT | 1 cut(s) | 22 |
| SfaNI | GCATC | 5 cut(s) | 242, 533, 622, 678, 688 |
| Sfr274I | CTCGAG | 1 cut(s) | 187 |
| Sfr303I | CCGCGG | 1 cut(s) | 705 |
| SgrBI | CCGCGG | 1 cut(s) | 705 |
| SinI | GGWCC | 3 cut(s) | 338, 559, 640 |
| SlaI | CTCGAG | 1 cut(s) | 187 |
| SmaI | CCCGGG | 1 cut(s) | 609 |
| SmlI | CTYRAG | 1 cut(s) | 187 |
| SmoI | CTYRAG | 1 cut(s) | 187 |
| Sse9I | AATT | 3 cut(s) | 128, 164, 307 |
| SspMI | CTAG | 1 cut(s) | 764 |
| StyD4I | CCNGG | 6 cut(s) | 22, 282, 328, 606, 607, 642 |
| StyI | CCWWGG | 2 cut(s) | 59, 247 |
| TaaI | ACNGT | 3 cut(s) | 357, 602, 905 |
| TaiI | ACGT | 2 cut(s) | 738, 756 |
| TaqI | TCGA | 5 cut(s) | 91, 188, 262, 303, 939 |
| TaqII | GACCGA | 2 cut(s) | 555, 706 |
| TasI | AATT | 3 cut(s) | 128, 164, 307 |
| TauI | GCSGC | 8 cut(s) | 82, 258, 282, 665, 696, 704, 845, 924 |
| TfiI | GAWTC | 2 cut(s) | 268, 317 |
| Tru1I | TTAA | 1 cut(s) | 410 |
| Tru9I | TTAA | 1 cut(s) | 410 |
| TseFI | GTSAC | 3 cut(s) | 65, 437, 493 |
| TseI | GCWGC | 3 cut(s) | 523, 914, 924 |
| Tsp45I | GTSAC | 3 cut(s) | 65, 437, 493 |
| TspGWI | ACGGA | 2 cut(s) | 63, 712 |
| TspMI | CCCGGG | 1 cut(s) | 607 |
| Tth111I | GACNNNGTC | 1 cut(s) | 777 |
| VneI | GTGCAC | 1 cut(s) | 39 |
| VpaK11BI | GGWCC | 3 cut(s) | 338, 559, 640 |
| XapI | RAATTY | 2 cut(s) | 128, 307 |
| XhoI | CTCGAG | 1 cut(s) | 187 |
| XmaI | CCCGGG | 1 cut(s) | 607 |
| XspI | CTAG | 1 cut(s) | 764 |