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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 472 |
| AccII | CGCG | 1 cut(s) | 525 |
| AciI | CCGC | 8 cut(s) | 422, 425, 472, 562, 573, 641, 644, 677 |
| AclWI | GGATC | 2 cut(s) | 215, 528 |
| AcoI | YGGCCR | 2 cut(s) | 645, 723 |
| AcuI | CTGAAG | 2 cut(s) | 226, 282 |
| AfaI | GTAC | 1 cut(s) | 54 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 203, 310, 352, 472, 516 |
| AgeI | ACCGGT | 1 cut(s) | 116 |
| AgsI | TTSAA | 1 cut(s) | 317 |
| AjiI | CACGTC | 1 cut(s) | 109 |
| AjnI | CCWGG | 4 cut(s) | 348, 399, 465, 618 |
| AleI | CACNNNNGTG | 2 cut(s) | 38, 587 |
| AluBI | AGCT | 3 cut(s) | 246, 325, 493 |
| AluI | AGCT | 3 cut(s) | 246, 325, 493 |
| Alw21I | GWGCWC | 1 cut(s) | 22 |
| Alw26I | GTCTC | 2 cut(s) | 107, 490 |
| AlwI | GGATC | 2 cut(s) | 215, 528 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 466 |
| Ama87I | CYCGRG | 2 cut(s) | 203, 309 |
| AoxI | GGCC | 9 cut(s) | 145, 174, 249, 343, 366, 463, 645, 711, 723 |
| ApeKI | GCWGC | 2 cut(s) | 274, 704 |
| AsiGI | ACCGGT | 1 cut(s) | 116 |
| AspLEI | GCGC | 1 cut(s) | 185 |
| AspS9I | GGNCC | 5 cut(s) | 119, 174, 343, 463, 579 |
| AsuC2I | CCSGG | 3 cut(s) | 310, 311, 715 |
| AsuHPI | GGTGA | 2 cut(s) | 601, 608 |
| AvaI | CYCGRG | 2 cut(s) | 203, 309 |
| AvaII | GGWCC | 2 cut(s) | 119, 579 |
| BalI | TGGCCA | 1 cut(s) | 725 |
| Bbv12I | GWGCWC | 1 cut(s) | 22 |
| BbvI | GCAGC | 2 cut(s) | 261, 691 |
| BccI | CCATC | 1 cut(s) | 715 |
| BceAI | ACGGC | 1 cut(s) | 437 |
| BciT130I | CCWGG | 4 cut(s) | 350, 401, 467, 620 |
| BcnI | CCSGG | 3 cut(s) | 310, 311, 715 |
| BcoDI | GTCTC | 2 cut(s) | 107, 490 |
| BfaI | CTAG | 3 cut(s) | 290, 494, 576 |
| BisI | GCNGC | 6 cut(s) | 275, 423, 573, 642, 645, 705 |
| BlsI | GCNGC | 6 cut(s) | 276, 424, 574, 643, 646, 706 |
| Bme1390I | CCNGG | 7 cut(s) | 310, 311, 350, 401, 467, 620, 715 |
| Bme18I | GGWCC | 2 cut(s) | 119, 579 |
| BmeT110I | CYCGRG | 2 cut(s) | 203, 309 |
| BmgBI | CACGTC | 1 cut(s) | 109 |
| BmgT120I | GGNCC | 5 cut(s) | 119, 174, 343, 463, 579 |
| BmrFI | CCNGG | 7 cut(s) | 310, 311, 350, 401, 467, 620, 715 |
| BmsI | GCATC | 2 cut(s) | 409, 418 |
| BpmI | CTGGAG | 4 cut(s) | 23, 108, 332, 488 |
| Bpu10I | CCTNAGC | 1 cut(s) | 326 |
| BpuMI | CCSGG | 3 cut(s) | 310, 311, 715 |
| BsaI | GGTCTC | 1 cut(s) | 107 |
| BsaJI | CCNNGG | 8 cut(s) | 58, 308, 309, 349, 369, 433, 619, 714 |
| BsaWI | WCCGGW | 1 cut(s) | 116 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 106, 136, 470, 500 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 203, 310, 352, 472, 516 |
| Bse118I | RCCGGY | 1 cut(s) | 116 |
| Bse1I | ACTGG | 3 cut(s) | 40, 232, 384 |
| BseBI | CCWGG | 4 cut(s) | 350, 401, 467, 620 |
| BseDI | CCNNGG | 8 cut(s) | 58, 308, 309, 349, 369, 433, 619, 714 |
| BseGI | GGATG | 3 cut(s) | 100, 433, 481 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 203, 310, 352, 472, 516 |
| BseMII | CTCAG | 3 cut(s) | 576, 618, 690 |
| BseNI | ACTGG | 3 cut(s) | 40, 232, 384 |
| BseRI | GAGGAG | 1 cut(s) | 347 |
| BseX3I | CGGCCG | 1 cut(s) | 645 |
| BseXI | GCAGC | 2 cut(s) | 261, 691 |
| BseYI | CCCAGC | 1 cut(s) | 171 |
| Bsh1236I | CGCG | 1 cut(s) | 525 |
| Bsh1285I | CGRYCG | 1 cut(s) | 648 |
| BshFI | GGCC | 9 cut(s) | 147, 176, 251, 345, 368, 465, 647, 713, 725 |
| BshTI | ACCGGT | 1 cut(s) | 116 |
| BsiEI | CGRYCG | 1 cut(s) | 648 |
| BsiHKAI | GWGCWC | 1 cut(s) | 22 |
| BsiHKCI | CYCGRG | 2 cut(s) | 203, 309 |
| BsiSI | CCGG | 4 cut(s) | 117, 177, 310, 714 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 203, 310, 352, 472, 516 |
| BsmAI | GTCTC | 2 cut(s) | 107, 490 |
| BsmBI | CGTCTC | 1 cut(s) | 490 |
| BsnI | GGCC | 9 cut(s) | 147, 176, 251, 345, 368, 465, 647, 713, 725 |
| Bso31I | GGTCTC | 1 cut(s) | 107 |
| BsoBI | CYCGRG | 2 cut(s) | 203, 309 |
| Bsp1286I | GDGCHC | 1 cut(s) | 22 |
| Bsp143I | GATC | 4 cut(s) | 207, 336, 520, 552 |
| BspACI | CCGC | 8 cut(s) | 422, 425, 472, 562, 573, 641, 644, 677 |
| BspANI | GGCC | 9 cut(s) | 147, 176, 251, 345, 368, 465, 647, 713, 725 |
| BspCNI | CTCAG | 3 cut(s) | 577, 619, 691 |
| BspFNI | CGCG | 1 cut(s) | 525 |
| BspPI | GGATC | 2 cut(s) | 215, 528 |
| BspTNI | GGTCTC | 1 cut(s) | 107 |
| BsrBI | CCGCTC | 1 cut(s) | 472 |
| BsrFI | RCCGGY | 1 cut(s) | 116 |
| BsrI | ACTGG | 3 cut(s) | 40, 232, 384 |
| BssAI | RCCGGY | 1 cut(s) | 116 |
| BssECI | CCNNGG | 8 cut(s) | 58, 308, 309, 349, 369, 433, 619, 714 |
| BssMI | GATC | 4 cut(s) | 207, 336, 520, 552 |
| BssT1I | CCWWGG | 2 cut(s) | 58, 369 |
| Bst2UI | CCWGG | 4 cut(s) | 350, 401, 467, 620 |
| Bst4CI | ACNGT | 3 cut(s) | 164, 223, 416 |
| Bst6I | CTCTTC | 1 cut(s) | 59 |
| BstC8I | GCNNGC | 1 cut(s) | 145 |
| BstDEI | CTNAG | 5 cut(s) | 326, 534, 585, 627, 699 |
| BstDSI | CCRYGG | 1 cut(s) | 433 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 514 |
| BstF5I | GGATG | 3 cut(s) | 100, 433, 481 |
| BstFNI | CGCG | 1 cut(s) | 525 |
| BstHHI | GCGC | 1 cut(s) | 185 |
| BstKTI | GATC | 4 cut(s) | 210, 339, 523, 555 |
| BstMAI | GTCTC | 2 cut(s) | 107, 490 |
| BstMBI | GATC | 4 cut(s) | 207, 336, 520, 552 |
| BstMCI | CGRYCG | 1 cut(s) | 648 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 144, 182, 428, 650, 659, 710 |
| BstNI | CCWGG | 4 cut(s) | 350, 401, 467, 620 |
| BstSCI | CCNGG | 7 cut(s) | 308, 309, 348, 399, 465, 618, 713 |
| BstUI | CGCG | 1 cut(s) | 525 |
| BstV1I | GCAGC | 2 cut(s) | 261, 691 |
| BstZI | CGGCCG | 1 cut(s) | 645 |
| BsuRI | GGCC | 9 cut(s) | 147, 176, 251, 345, 368, 465, 647, 713, 725 |
| BtgI | CCRYGG | 1 cut(s) | 433 |
| BtgZI | GCGATG | 1 cut(s) | 433 |
| BtrI | CACGTC | 1 cut(s) | 109 |
| BtsCI | GGATG | 3 cut(s) | 100, 433, 481 |
| BtsIMutI | CAGTG | 2 cut(s) | 33, 582 |
| Cac8I | GCNNGC | 1 cut(s) | 145 |
| CaiI | CAGNNNCTG | 1 cut(s) | 466 |
| CfoI | GCGC | 1 cut(s) | 185 |
| Cfr10I | RCCGGY | 1 cut(s) | 116 |
| Cfr13I | GGNCC | 5 cut(s) | 119, 174, 343, 463, 579 |
| Cfr9I | CCCGGG | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 659 |
| Csp6I | GTAC | 1 cut(s) | 53 |
| CspAI | ACCGGT | 1 cut(s) | 116 |
| CviAII | CATG | 2 cut(s) | 278, 694 |
| CviQI | GTAC | 1 cut(s) | 53 |
| DdeI | CTNAG | 5 cut(s) | 326, 534, 585, 627, 699 |
| DpnI | GATC | 4 cut(s) | 209, 338, 522, 554 |
| DpnII | GATC | 4 cut(s) | 207, 336, 520, 552 |
| EaeI | YGGCCR | 2 cut(s) | 645, 723 |
| EagI | CGGCCG | 1 cut(s) | 645 |
| Eam1104I | CTCTTC | 1 cut(s) | 59 |
| EarI | CTCTTC | 1 cut(s) | 59 |
| EciI | GGCGGA | 2 cut(s) | 440, 692 |
| EclXI | CGGCCG | 1 cut(s) | 645 |
| Eco130I | CCWWGG | 2 cut(s) | 58, 369 |
| Eco31I | GGTCTC | 1 cut(s) | 107 |
| Eco47I | GGWCC | 2 cut(s) | 119, 579 |
| Eco52I | CGGCCG | 1 cut(s) | 645 |
| Eco57I | CTGAAG | 2 cut(s) | 226, 282 |
| Eco88I | CYCGRG | 2 cut(s) | 203, 309 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 514 |
| EcoO109I | RGGNCCY | 2 cut(s) | 343, 463 |
| EcoRII | CCWGG | 4 cut(s) | 348, 399, 465, 618 |
| EcoT14I | CCWWGG | 2 cut(s) | 58, 369 |
| ErhI | CCWWGG | 2 cut(s) | 58, 369 |
| Esp3I | CGTCTC | 1 cut(s) | 490 |
| FaeI | CATG | 2 cut(s) | 281, 697 |
| FaiI | YATR | 3 cut(s) | 279, 506, 695 |
| FatI | CATG | 2 cut(s) | 277, 693 |
| FauI | CCCGC | 2 cut(s) | 465, 555 |
| Fnu4HI | GCNGC | 6 cut(s) | 275, 423, 573, 642, 645, 705 |
| FokI | GGATG | 3 cut(s) | 107, 440, 488 |
| Fsp4HI | GCNGC | 6 cut(s) | 275, 423, 573, 642, 645, 705 |
| FspBI | CTAG | 3 cut(s) | 290, 494, 576 |
| GlaI | GCGC | 1 cut(s) | 184 |
| GluI | GCNGC | 6 cut(s) | 275, 423, 573, 642, 645, 705 |
| GsaI | CCCAGC | 1 cut(s) | 175 |
| GsuI | CTGGAG | 4 cut(s) | 23, 108, 332, 488 |
| HaeIII | GGCC | 9 cut(s) | 147, 176, 251, 345, 368, 465, 647, 713, 725 |
| HapII | CCGG | 4 cut(s) | 117, 177, 310, 714 |
| HgaI | GACGC | 1 cut(s) | 659 |
| HhaI | GCGC | 1 cut(s) | 185 |
| Hin1II | CATG | 2 cut(s) | 281, 697 |
| Hin6I | GCGC | 1 cut(s) | 183 |
| HinP1I | GCGC | 1 cut(s) | 183 |
| HincII | GTYRAC | 1 cut(s) | 229 |
| HindII | GTYRAC | 1 cut(s) | 229 |
| HinfI | GANTC | 2 cut(s) | 5, 201 |
| HpaI | GTTAAC | 1 cut(s) | 229 |
| HpaII | CCGG | 4 cut(s) | 117, 177, 310, 714 |
| HphI | GGTGA | 2 cut(s) | 601, 608 |
| Hpy166II | GTNNAC | 3 cut(s) | 55, 229, 582 |
| Hpy188I | TCNGA | 1 cut(s) | 301 |
| Hpy188III | TCNNGA | 2 cut(s) | 205, 550 |
| Hpy8I | GTNNAC | 3 cut(s) | 55, 229, 582 |
| Hpy99I | CGWCG | 3 cut(s) | 32, 110, 653 |
| HpyAV | CCTTC | 4 cut(s) | 149, 250, 358, 589 |
| HpyCH4III | ACNGT | 3 cut(s) | 164, 223, 416 |
| HpyCH4IV | ACGT | 3 cut(s) | 99, 108, 637 |
| HpyCH4V | TGCA | 2 cut(s) | 277, 707 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 144, 182, 428, 650, 659, 710 |
| HpyF3I | CTNAG | 5 cut(s) | 326, 534, 585, 627, 699 |
| HpySE526I | ACGT | 3 cut(s) | 99, 108, 637 |
| Hsp92II | CATG | 2 cut(s) | 281, 697 |
| HspAI | GCGC | 1 cut(s) | 183 |
| KspAI | GTTAAC | 1 cut(s) | 229 |
| Kzo9I | GATC | 4 cut(s) | 207, 336, 520, 552 |
| LmnI | GCTCC | 3 cut(s) | 322, 391, 469 |
| Lsp1109I | GCAGC | 2 cut(s) | 261, 691 |
| LweI | GCATC | 2 cut(s) | 409, 418 |
| MaeI | CTAG | 3 cut(s) | 290, 494, 576 |
| MaeII | ACGT | 3 cut(s) | 99, 108, 637 |
| MaeIII | GTNAC | 2 cut(s) | 40, 164 |
| MalI | GATC | 4 cut(s) | 209, 338, 522, 554 |
| MbiI | CCGCTC | 1 cut(s) | 472 |
| MboI | GATC | 4 cut(s) | 207, 336, 520, 552 |
| MboII | GAAGA | 3 cut(s) | 76, 143, 604 |
| MhlI | GDGCHC | 1 cut(s) | 22 |
| MlsI | TGGCCA | 1 cut(s) | 725 |
| MluCI | AATT | 2 cut(s) | 281, 440 |
| MluNI | TGGCCA | 1 cut(s) | 725 |
| MlyI | GAGTC | 2 cut(s) | 14, 195 |
| Mox20I | TGGCCA | 1 cut(s) | 725 |
| MscI | TGGCCA | 1 cut(s) | 725 |
| MseI | TTAA | 3 cut(s) | 228, 456, 666 |
| MslI | CAYNNNNRTG | 2 cut(s) | 38, 587 |
| Msp20I | TGGCCA | 1 cut(s) | 725 |
| MspA1I | CMGCKG | 1 cut(s) | 562 |
| MspI | CCGG | 4 cut(s) | 117, 177, 310, 714 |
| MspR9I | CCNGG | 7 cut(s) | 310, 311, 350, 401, 467, 620, 715 |
| MvaI | CCWGG | 4 cut(s) | 350, 401, 467, 620 |
| MvnI | CGCG | 1 cut(s) | 525 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 144, 182, 428, 650, 659, 710 |
| NciI | CCSGG | 3 cut(s) | 310, 311, 715 |
| NdeII | GATC | 4 cut(s) | 207, 336, 520, 552 |
| NlaIII | CATG | 2 cut(s) | 281, 697 |
| NmeAIII | GCCGAG | 1 cut(s) | 227 |
| NmuCI | GTSAC | 2 cut(s) | 40, 164 |
| OliI | CACNNNNGTG | 2 cut(s) | 38, 587 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 105 |
| PflFI | GACNNNGTC | 2 cut(s) | 83, 482 |
| PinAI | ACCGGT | 1 cut(s) | 116 |
| PkrI | GCNGC | 6 cut(s) | 276, 424, 574, 643, 646, 706 |
| PleI | GAGTC | 2 cut(s) | 13, 195 |
| PpsI | GAGTC | 2 cut(s) | 13, 195 |
| Psp6I | CCWGG | 4 cut(s) | 348, 399, 465, 618 |
| PspFI | CCCAGC | 1 cut(s) | 171 |
| PspGI | CCWGG | 4 cut(s) | 348, 399, 465, 618 |
| PspPI | GGNCC | 5 cut(s) | 119, 174, 343, 463, 579 |
| PstNI | CAGNNNCTG | 1 cut(s) | 466 |
| PsyI | GACNNNGTC | 2 cut(s) | 83, 482 |
| RsaI | GTAC | 1 cut(s) | 54 |
| RsaNI | GTAC | 1 cut(s) | 53 |
| RseI | CAYNNNNRTG | 2 cut(s) | 38, 587 |
| SaqAI | TTAA | 3 cut(s) | 228, 456, 666 |
| SatI | GCNGC | 6 cut(s) | 275, 423, 573, 642, 645, 705 |
| Sau3AI | GATC | 4 cut(s) | 207, 336, 520, 552 |
| Sau96I | GGNCC | 5 cut(s) | 119, 174, 343, 463, 579 |
| SchI | GAGTC | 2 cut(s) | 14, 195 |
| ScrFI | CCNGG | 7 cut(s) | 310, 311, 350, 401, 467, 620, 715 |
| SduI | GDGCHC | 1 cut(s) | 22 |
| SfaNI | GCATC | 2 cut(s) | 409, 418 |
| SinI | GGWCC | 2 cut(s) | 119, 579 |
| SmaI | CCCGGG | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 38, 587 |
| Sse9I | AATT | 2 cut(s) | 281, 440 |
| SsiI | CCGC | 8 cut(s) | 422, 425, 472, 562, 573, 641, 644, 677 |
| SspMI | CTAG | 3 cut(s) | 290, 494, 576 |
| StyD4I | CCNGG | 7 cut(s) | 308, 309, 348, 399, 465, 618, 713 |
| StyI | CCWWGG | 2 cut(s) | 58, 369 |
| TaaI | ACNGT | 3 cut(s) | 164, 223, 416 |
| TaiI | ACGT | 3 cut(s) | 102, 111, 640 |
| TaqI | TCGA | 3 cut(s) | 87, 153, 199 |
| TasI | AATT | 2 cut(s) | 281, 440 |
| TauI | GCSGC | 4 cut(s) | 425, 575, 644, 647 |
| Tru1I | TTAA | 3 cut(s) | 228, 456, 666 |
| Tru9I | TTAA | 3 cut(s) | 228, 456, 666 |
| TscAI | CASTG | 2 cut(s) | 40, 589 |
| TseFI | GTSAC | 2 cut(s) | 40, 164 |
| TseI | GCWGC | 2 cut(s) | 274, 704 |
| Tsp45I | GTSAC | 2 cut(s) | 40, 164 |
| TspDTI | ATGAA | 1 cut(s) | 294 |
| TspMI | CCCGGG | 1 cut(s) | 309 |
| TspRI | CASTG | 2 cut(s) | 40, 589 |
| Tth111I | GACNNNGTC | 2 cut(s) | 83, 482 |
| VpaK11BI | GGWCC | 2 cut(s) | 119, 579 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 514 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 376 |
| XmaI | CCCGGG | 1 cut(s) | 309 |
| XspI | CTAG | 3 cut(s) | 290, 494, 576 |