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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 620 |
| Acc65I | GGTACC | 1 cut(s) | 611 |
| AccB1I | GGYRCC | 2 cut(s) | 359, 611 |
| AccBSI | CCGCTC | 2 cut(s) | 115, 495 |
| AccII | CGCG | 2 cut(s) | 168, 458 |
| AclWI | GGATC | 3 cut(s) | 171, 190, 216 |
| AcoI | YGGCCR | 2 cut(s) | 45, 366 |
| AcuI | CTGAAG | 1 cut(s) | 185 |
| AfaI | GTAC | 1 cut(s) | 613 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 159, 205 |
| AjnI | CCWGG | 1 cut(s) | 108 |
| AleI | CACNNNNGTG | 1 cut(s) | 600 |
| AluBI | AGCT | 6 cut(s) | 136, 241, 269, 296, 541, 590 |
| AluI | AGCT | 6 cut(s) | 136, 241, 269, 296, 541, 590 |
| Alw21I | GWGCWC | 1 cut(s) | 451 |
| Alw26I | GTCTC | 1 cut(s) | 133 |
| Alw44I | GTGCAC | 1 cut(s) | 447 |
| AlwI | GGATC | 3 cut(s) | 171, 190, 216 |
| AoxI | GGCC | 5 cut(s) | 45, 333, 354, 366, 431 |
| ApaLI | GTGCAC | 1 cut(s) | 447 |
| ApeKI | GCWGC | 3 cut(s) | 284, 293, 590 |
| Asp718I | GGTACC | 1 cut(s) | 611 |
| AspLEI | GCGC | 1 cut(s) | 398 |
| AspS9I | GGNCC | 2 cut(s) | 106, 431 |
| AsuHPI | GGTGA | 1 cut(s) | 244 |
| AvaII | GGWCC | 1 cut(s) | 106 |
| BaeGI | GKGCMC | 1 cut(s) | 451 |
| BalI | TGGCCA | 2 cut(s) | 47, 368 |
| BanI | GGYRCC | 2 cut(s) | 359, 611 |
| BanII | GRGCYC | 1 cut(s) | 632 |
| Bbv12I | GWGCWC | 1 cut(s) | 451 |
| BbvCI | CCTCAGC | 3 cut(s) | 228, 270, 483 |
| BbvI | GCAGC | 3 cut(s) | 296, 305, 577 |
| BccI | CCATC | 2 cut(s) | 442, 602 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 70, 104 |
| BciT130I | CCWGG | 1 cut(s) | 110 |
| BciVI | GTATCC | 1 cut(s) | 580 |
| BcoDI | GTCTC | 1 cut(s) | 133 |
| BfaI | CTAG | 3 cut(s) | 137, 219, 587 |
| BfoI | RGCGCY | 1 cut(s) | 399 |
| BfuI | GTATCC | 1 cut(s) | 580 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 430 |
| BisI | GCNGC | 4 cut(s) | 174, 285, 294, 591 |
| BlsI | GCNGC | 4 cut(s) | 175, 286, 295, 592 |
| Bme1390I | CCNGG | 1 cut(s) | 110 |
| Bme18I | GGWCC | 1 cut(s) | 106 |
| BmgT120I | GGNCC | 2 cut(s) | 106, 431 |
| BmiI | GGNNCC | 4 cut(s) | 107, 361, 471, 613 |
| BmrFI | CCNGG | 1 cut(s) | 110 |
| BmrI | ACTGGG | 1 cut(s) | 415 |
| BmsI | GCATC | 4 cut(s) | 52, 61, 425, 478 |
| BmuI | ACTGGG | 1 cut(s) | 415 |
| BpmI | CTGGAG | 2 cut(s) | 131, 263 |
| Bpu10I | CCTNAGC | 6 cut(s) | 12, 177, 228, 270, 483, 496 |
| BsaJI | CCNNGG | 3 cut(s) | 76, 363, 564 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 159, 205 |
| Bse118I | RCCGGY | 1 cut(s) | 356 |
| Bse1I | ACTGG | 3 cut(s) | 27, 48, 410 |
| BseBI | CCWGG | 1 cut(s) | 110 |
| BseDI | CCNNGG | 3 cut(s) | 76, 363, 564 |
| BseGI | GGATG | 5 cut(s) | 76, 416, 469, 493, 613 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 159, 205 |
| BseMII | CTCAG | 6 cut(s) | 219, 261, 333, 474, 510, 572 |
| BseNI | ACTGG | 3 cut(s) | 27, 48, 410 |
| BseSI | GKGCMC | 1 cut(s) | 451 |
| BseXI | GCAGC | 3 cut(s) | 296, 305, 577 |
| BseYI | CCCAGC | 2 cut(s) | 420, 428 |
| BsgI | GTGCAG | 1 cut(s) | 303 |
| Bsh1236I | CGCG | 2 cut(s) | 168, 458 |
| Bsh1285I | CGRYCG | 1 cut(s) | 291 |
| BshFI | GGCC | 5 cut(s) | 47, 335, 356, 368, 433 |
| BshNI | GGYRCC | 2 cut(s) | 359, 611 |
| BsiEI | CGRYCG | 1 cut(s) | 291 |
| BsiHKAI | GWGCWC | 1 cut(s) | 451 |
| BsiSI | CCGG | 1 cut(s) | 357 |
| BslFI | GGGAC | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 159, 205 |
| BsmAI | GTCTC | 1 cut(s) | 133 |
| BsmBI | CGTCTC | 1 cut(s) | 133 |
| BsmFI | GGGAC | 1 cut(s) | 119 |
| BsnI | GGCC | 5 cut(s) | 47, 335, 356, 368, 433 |
| Bsp1286I | GDGCHC | 2 cut(s) | 451, 632 |
| Bsp143I | GATC | 4 cut(s) | 121, 163, 195, 221 |
| Bsp19I | CCATGG | 2 cut(s) | 76, 363 |
| BspANI | GGCC | 5 cut(s) | 47, 335, 356, 368, 433 |
| BspCNI | CTCAG | 6 cut(s) | 220, 262, 334, 475, 509, 571 |
| BspFNI | CGCG | 2 cut(s) | 168, 458 |
| BspLI | GGNNCC | 4 cut(s) | 107, 361, 471, 613 |
| BspPI | GGATC | 3 cut(s) | 171, 190, 216 |
| BspT107I | GGYRCC | 2 cut(s) | 359, 611 |
| BsrBI | CCGCTC | 2 cut(s) | 115, 495 |
| BsrFI | RCCGGY | 1 cut(s) | 356 |
| BsrI | ACTGG | 3 cut(s) | 27, 48, 410 |
| BssAI | RCCGGY | 1 cut(s) | 356 |
| BssECI | CCNNGG | 3 cut(s) | 76, 363, 564 |
| BssMI | GATC | 4 cut(s) | 121, 163, 195, 221 |
| BssT1I | CCWWGG | 2 cut(s) | 76, 363 |
| Bst2UI | CCWGG | 1 cut(s) | 110 |
| Bst4CI | ACNGT | 1 cut(s) | 59 |
| BstC8I | GCNNGC | 4 cut(s) | 426, 456, 493, 580 |
| BstDEI | CTNAG | 9 cut(s) | 12, 177, 228, 270, 342, 483, 496, 537, 558 |
| BstDSI | CCRYGG | 2 cut(s) | 76, 363 |
| BstF5I | GGATG | 5 cut(s) | 76, 416, 469, 493, 613 |
| BstFNI | CGCG | 2 cut(s) | 168, 458 |
| BstH2I | RGCGCY | 1 cut(s) | 399 |
| BstHHI | GCGC | 1 cut(s) | 398 |
| BstKTI | GATC | 4 cut(s) | 124, 166, 198, 224 |
| BstMAI | GTCTC | 1 cut(s) | 133 |
| BstMBI | GATC | 4 cut(s) | 121, 163, 195, 221 |
| BstMCI | CGRYCG | 1 cut(s) | 291 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 71, 290, 293, 353, 430, 455, 488, 501, 510 |
| BstNI | CCWGG | 1 cut(s) | 110 |
| BstSCI | CCNGG | 1 cut(s) | 108 |
| BstSLI | GKGCMC | 1 cut(s) | 451 |
| BstUI | CGCG | 2 cut(s) | 168, 458 |
| BstV1I | GCAGC | 3 cut(s) | 296, 305, 577 |
| BstX2I | RGATCY | 2 cut(s) | 195, 221 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 428 |
| BstYI | RGATCY | 2 cut(s) | 195, 221 |
| BsuI | GTATCC | 1 cut(s) | 580 |
| BsuRI | GGCC | 5 cut(s) | 47, 335, 356, 368, 433 |
| BtgI | CCRYGG | 2 cut(s) | 76, 363 |
| BtgZI | GCGATG | 1 cut(s) | 362 |
| BtsCI | GGATG | 5 cut(s) | 76, 416, 469, 493, 613 |
| Cac8I | GCNNGC | 4 cut(s) | 426, 456, 493, 580 |
| CfoI | GCGC | 1 cut(s) | 398 |
| Cfr10I | RCCGGY | 1 cut(s) | 356 |
| Cfr13I | GGNCC | 2 cut(s) | 106, 431 |
| Csp6I | GTAC | 1 cut(s) | 612 |
| CviAII | CATG | 4 cut(s) | 77, 337, 364, 641 |
| CviQI | GTAC | 1 cut(s) | 612 |
| DdeI | CTNAG | 9 cut(s) | 12, 177, 228, 270, 342, 483, 496, 537, 558 |
| DpnI | GATC | 4 cut(s) | 123, 165, 197, 223 |
| DpnII | GATC | 4 cut(s) | 121, 163, 195, 221 |
| EaeI | YGGCCR | 2 cut(s) | 45, 366 |
| EciI | GGCGGA | 1 cut(s) | 542 |
| Eco130I | CCWWGG | 2 cut(s) | 76, 363 |
| Eco24I | GRGCYC | 1 cut(s) | 632 |
| Eco47I | GGWCC | 1 cut(s) | 106 |
| Eco57I | CTGAAG | 1 cut(s) | 185 |
| EcoO109I | RGGNCCY | 1 cut(s) | 106 |
| EcoRII | CCWGG | 1 cut(s) | 108 |
| EcoT14I | CCWWGG | 2 cut(s) | 76, 363 |
| EcoT38I | GRGCYC | 1 cut(s) | 632 |
| ErhI | CCWWGG | 2 cut(s) | 76, 363 |
| Esp3I | CGTCTC | 1 cut(s) | 133 |
| FaeI | CATG | 4 cut(s) | 80, 340, 367, 644 |
| FaiI | YATR | 7 cut(s) | 78, 149, 338, 365, 518, 620, 642 |
| FaqI | GGGAC | 1 cut(s) | 119 |
| FatI | CATG | 4 cut(s) | 76, 336, 363, 640 |
| FauI | CCCGC | 5 cut(s) | 153, 198, 433, 463, 500 |
| Fnu4HI | GCNGC | 4 cut(s) | 174, 285, 294, 591 |
| FokI | GGATG | 5 cut(s) | 83, 403, 476, 500, 620 |
| FriOI | GRGCYC | 1 cut(s) | 632 |
| Fsp4HI | GCNGC | 4 cut(s) | 174, 285, 294, 591 |
| FspBI | CTAG | 3 cut(s) | 137, 219, 587 |
| GlaI | GCGC | 1 cut(s) | 397 |
| GluI | GCNGC | 4 cut(s) | 174, 285, 294, 591 |
| GsaI | CCCAGC | 2 cut(s) | 424, 432 |
| GsuI | CTGGAG | 2 cut(s) | 131, 263 |
| HaeII | RGCGCY | 1 cut(s) | 399 |
| HaeIII | GGCC | 5 cut(s) | 47, 335, 356, 368, 433 |
| HapII | CCGG | 1 cut(s) | 357 |
| HhaI | GCGC | 1 cut(s) | 398 |
| Hin1II | CATG | 4 cut(s) | 80, 340, 367, 644 |
| Hin6I | GCGC | 1 cut(s) | 396 |
| HinP1I | GCGC | 1 cut(s) | 396 |
| HinfI | GANTC | 1 cut(s) | 439 |
| HpaII | CCGG | 1 cut(s) | 357 |
| HphI | GGTGA | 1 cut(s) | 244 |
| Hpy166II | GTNNAC | 1 cut(s) | 449 |
| Hpy188I | TCNGA | 1 cut(s) | 565 |
| Hpy188III | TCNNGA | 1 cut(s) | 219 |
| Hpy8I | GTNNAC | 1 cut(s) | 449 |
| Hpy99I | CGWCG | 1 cut(s) | 42 |
| HpyAV | CCTTC | 4 cut(s) | 209, 325, 346, 385 |
| HpyCH4III | ACNGT | 1 cut(s) | 59 |
| HpyCH4IV | ACGT | 1 cut(s) | 280 |
| HpyCH4V | TGCA | 3 cut(s) | 95, 284, 449 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 71, 290, 293, 353, 430, 455, 488, 501, 510 |
| HpyF3I | CTNAG | 9 cut(s) | 12, 177, 228, 270, 342, 483, 496, 537, 558 |
| HpySE526I | ACGT | 1 cut(s) | 280 |
| Hsp92II | CATG | 4 cut(s) | 80, 340, 367, 644 |
| HspAI | GCGC | 1 cut(s) | 396 |
| KpnI | GGTACC | 1 cut(s) | 615 |
| Kzo9I | GATC | 4 cut(s) | 121, 163, 195, 221 |
| LmnI | GCTCC | 3 cut(s) | 34, 112, 266 |
| Lsp1109I | GCAGC | 3 cut(s) | 296, 305, 577 |
| LweI | GCATC | 4 cut(s) | 52, 61, 425, 478 |
| MaeI | CTAG | 3 cut(s) | 137, 219, 587 |
| MaeII | ACGT | 1 cut(s) | 280 |
| MalI | GATC | 4 cut(s) | 123, 165, 197, 223 |
| MbiI | CCGCTC | 2 cut(s) | 115, 495 |
| MboI | GATC | 4 cut(s) | 121, 163, 195, 221 |
| MboII | GAAGA | 1 cut(s) | 247 |
| MflI | RGATCY | 2 cut(s) | 195, 221 |
| MhlI | GDGCHC | 2 cut(s) | 451, 632 |
| MlsI | TGGCCA | 2 cut(s) | 47, 368 |
| MluCI | AATT | 2 cut(s) | 83, 649 |
| MluNI | TGGCCA | 2 cut(s) | 47, 368 |
| MlyI | GAGTC | 1 cut(s) | 448 |
| MnlI | CCTC | 9 cut(s) | 223, 226, 244, 265, 337, 453, 472, 478, 559 |
| Mox20I | TGGCCA | 2 cut(s) | 47, 368 |
| MscI | TGGCCA | 2 cut(s) | 47, 368 |
| MseI | TTAA | 1 cut(s) | 309 |
| MslI | CAYNNNNRTG | 1 cut(s) | 600 |
| Msp20I | TGGCCA | 2 cut(s) | 47, 368 |
| MspA1I | CMGCKG | 5 cut(s) | 205, 227, 296, 320, 428 |
| MspI | CCGG | 1 cut(s) | 357 |
| MspR9I | CCNGG | 1 cut(s) | 110 |
| MvaI | CCWGG | 1 cut(s) | 110 |
| MvnI | CGCG | 2 cut(s) | 168, 458 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 71, 290, 293, 353, 430, 455, 488, 501, 510 |
| NcoI | CCATGG | 2 cut(s) | 76, 363 |
| NdeII | GATC | 4 cut(s) | 121, 163, 195, 221 |
| NlaIII | CATG | 4 cut(s) | 80, 340, 367, 644 |
| NlaIV | GGNNCC | 4 cut(s) | 107, 361, 471, 613 |
| NmeAIII | GCCGAG | 1 cut(s) | 651 |
| OliI | CACNNNNGTG | 1 cut(s) | 600 |
| PflFI | GACNNNGTC | 1 cut(s) | 407 |
| PkrI | GCNGC | 4 cut(s) | 175, 286, 295, 592 |
| PleI | GAGTC | 1 cut(s) | 447 |
| PpsI | GAGTC | 1 cut(s) | 447 |
| PpuMI | RGGWCCY | 1 cut(s) | 106 |
| PsiI | TTATAA | 1 cut(s) | 620 |
| Psp5II | RGGWCCY | 1 cut(s) | 106 |
| Psp6I | CCWGG | 1 cut(s) | 108 |
| PspFI | CCCAGC | 2 cut(s) | 420, 428 |
| PspGI | CCWGG | 1 cut(s) | 108 |
| PspN4I | GGNNCC | 4 cut(s) | 107, 361, 471, 613 |
| PspPI | GGNCC | 2 cut(s) | 106, 431 |
| PspPPI | RGGWCCY | 1 cut(s) | 106 |
| PsuI | RGATCY | 2 cut(s) | 195, 221 |
| PsyI | GACNNNGTC | 1 cut(s) | 407 |
| PvuII | CAGCTG | 1 cut(s) | 296 |
| RsaI | GTAC | 1 cut(s) | 613 |
| RsaNI | GTAC | 1 cut(s) | 612 |
| RseI | CAYNNNNRTG | 1 cut(s) | 600 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| SatI | GCNGC | 4 cut(s) | 174, 285, 294, 591 |
| Sau3AI | GATC | 4 cut(s) | 121, 163, 195, 221 |
| Sau96I | GGNCC | 2 cut(s) | 106, 431 |
| SchI | GAGTC | 1 cut(s) | 448 |
| ScrFI | CCNGG | 1 cut(s) | 110 |
| SduI | GDGCHC | 2 cut(s) | 451, 632 |
| SfaNI | GCATC | 4 cut(s) | 52, 61, 425, 478 |
| SinI | GGWCC | 1 cut(s) | 106 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 600 |
| Sse9I | AATT | 2 cut(s) | 83, 649 |
| SspMI | CTAG | 3 cut(s) | 137, 219, 587 |
| StyD4I | CCNGG | 1 cut(s) | 108 |
| StyI | CCWWGG | 2 cut(s) | 76, 363 |
| TaaI | ACNGT | 1 cut(s) | 59 |
| TaiI | ACGT | 1 cut(s) | 283 |
| TaqI | TCGA | 2 cut(s) | 437, 647 |
| TasI | AATT | 2 cut(s) | 83, 649 |
| TauI | GCSGC | 1 cut(s) | 176 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TseI | GCWGC | 3 cut(s) | 284, 293, 590 |
| TspDTI | ATGAA | 1 cut(s) | 365 |
| Tth111I | GACNNNGTC | 1 cut(s) | 407 |
| VneI | GTGCAC | 1 cut(s) | 447 |
| VpaK11BI | GGWCC | 1 cut(s) | 106 |
| XbaI | TCTAGA | 1 cut(s) | 218 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 370 |
| XspI | CTAG | 3 cut(s) | 137, 219, 587 |