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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 82, 94 |
| AccII | CGCG | 3 cut(s) | 57, 261, 362 |
| AclWI | GGATC | 1 cut(s) | 169 |
| AcsI | RAATTY | 1 cut(s) | 218 |
| AcuI | CTGAAG | 1 cut(s) | 158 |
| AcyI | GRCGYC | 1 cut(s) | 551 |
| AfaI | GTAC | 2 cut(s) | 420, 541 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 81, 139, 151, 184, 243, 265, 529 |
| AgsI | TTSAA | 1 cut(s) | 182 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 361, 555 |
| AjnI | CCWGG | 2 cut(s) | 351, 591 |
| AluBI | AGCT | 6 cut(s) | 115, 148, 211, 310, 390, 607 |
| AluI | AGCT | 6 cut(s) | 115, 148, 211, 310, 390, 607 |
| Alw26I | GTCTC | 1 cut(s) | 2 |
| AlwI | GGATC | 1 cut(s) | 169 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 269 |
| Ama87I | CYCGRG | 1 cut(s) | 528 |
| AoxI | GGCC | 1 cut(s) | 374 |
| ApeKI | GCWGC | 6 cut(s) | 269, 370, 398, 401, 607, 635 |
| ApoI | RAATTY | 1 cut(s) | 218 |
| AspLEI | GCGC | 2 cut(s) | 263, 316 |
| AspS9I | GGNCC | 3 cut(s) | 142, 355, 449 |
| AsuC2I | CCSGG | 1 cut(s) | 238 |
| AsuHPI | GGTGA | 3 cut(s) | 446, 468, 559 |
| AvaI | CYCGRG | 1 cut(s) | 528 |
| AvaII | GGWCC | 3 cut(s) | 142, 355, 449 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 531, 564 |
| BbvI | GCAGC | 6 cut(s) | 256, 382, 385, 388, 594, 622 |
| BccI | CCATC | 1 cut(s) | 530 |
| BceAI | ACGGC | 1 cut(s) | 59 |
| BciT130I | CCWGG | 2 cut(s) | 353, 593 |
| BclI | TGATCA | 2 cut(s) | 442, 577 |
| BcnI | CCSGG | 1 cut(s) | 238 |
| BcoDI | GTCTC | 1 cut(s) | 2 |
| BfaI | CTAG | 1 cut(s) | 149 |
| BisI | GCNGC | 9 cut(s) | 195, 259, 270, 371, 374, 399, 402, 608, 636 |
| BlsI | GCNGC | 9 cut(s) | 196, 260, 271, 372, 375, 400, 403, 609, 637 |
| Bme1390I | CCNGG | 3 cut(s) | 238, 353, 593 |
| Bme18I | GGWCC | 3 cut(s) | 142, 355, 449 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 361, 555 |
| BmeT110I | CYCGRG | 1 cut(s) | 528 |
| BmgT120I | GGNCC | 3 cut(s) | 142, 355, 449 |
| BmiI | GGNNCC | 1 cut(s) | 257 |
| BmrFI | CCNGG | 3 cut(s) | 238, 353, 593 |
| BmsI | GCATC | 4 cut(s) | 31, 40, 448, 470 |
| BpmI | CTGGAG | 2 cut(s) | 137, 432 |
| Bpu10I | CCTNAGC | 1 cut(s) | 242 |
| BpuMI | CCSGG | 1 cut(s) | 238 |
| BsaHI | GRCGYC | 1 cut(s) | 551 |
| BsaJI | CCNNGG | 4 cut(s) | 27, 55, 276, 297 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 463, 493 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 81, 139, 151, 184, 243, 265, 529 |
| Bse118I | RCCGGY | 1 cut(s) | 610 |
| Bse1I | ACTGG | 1 cut(s) | 415 |
| BseBI | CCWGG | 2 cut(s) | 353, 593 |
| BseDI | CCNNGG | 4 cut(s) | 27, 55, 276, 297 |
| BseGI | GGATG | 3 cut(s) | 55, 232, 541 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 81, 139, 151, 184, 243, 265, 529 |
| BseMII | CTCAG | 1 cut(s) | 479 |
| BseNI | ACTGG | 1 cut(s) | 415 |
| BseRI | GAGGAG | 2 cut(s) | 268, 635 |
| BseXI | GCAGC | 6 cut(s) | 256, 382, 385, 388, 594, 622 |
| BseYI | CCCAGC | 1 cut(s) | 111 |
| Bsh1236I | CGCG | 3 cut(s) | 57, 261, 362 |
| Bsh1285I | CGRYCG | 1 cut(s) | 103 |
| BshFI | GGCC | 1 cut(s) | 376 |
| BsiEI | CGRYCG | 1 cut(s) | 103 |
| BsiHKCI | CYCGRG | 1 cut(s) | 528 |
| BsiSI | CCGG | 3 cut(s) | 238, 452, 611 |
| BslFI | GGGAC | 3 cut(s) | 98, 484, 543 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 81, 139, 151, 184, 243, 265, 529 |
| BsmAI | GTCTC | 1 cut(s) | 2 |
| BsmFI | GGGAC | 3 cut(s) | 98, 484, 543 |
| BsnI | GGCC | 1 cut(s) | 376 |
| BsoBI | CYCGRG | 1 cut(s) | 528 |
| Bsp143I | GATC | 3 cut(s) | 174, 442, 577 |
| BspANI | GGCC | 1 cut(s) | 376 |
| BspCNI | CTCAG | 2 cut(s) | 4, 478 |
| BspFNI | CGCG | 3 cut(s) | 57, 261, 362 |
| BspLI | GGNNCC | 1 cut(s) | 257 |
| BspPI | GGATC | 1 cut(s) | 169 |
| BsrBI | CCGCTC | 2 cut(s) | 82, 94 |
| BsrFI | RCCGGY | 1 cut(s) | 610 |
| BsrI | ACTGG | 1 cut(s) | 415 |
| BssAI | RCCGGY | 1 cut(s) | 610 |
| BssECI | CCNNGG | 4 cut(s) | 27, 55, 276, 297 |
| BssMI | GATC | 3 cut(s) | 174, 442, 577 |
| BssNI | GRCGYC | 1 cut(s) | 551 |
| BssT1I | CCWWGG | 1 cut(s) | 27 |
| Bst2UI | CCWGG | 2 cut(s) | 353, 593 |
| Bst4CI | ACNGT | 1 cut(s) | 277 |
| BstACI | GRCGYC | 1 cut(s) | 551 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 269 |
| BstC8I | GCNNGC | 6 cut(s) | 55, 312, 384, 388, 612, 616 |
| BstDEI | CTNAG | 3 cut(s) | 12, 242, 465 |
| BstDSI | CCRYGG | 2 cut(s) | 55, 276 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 137 |
| BstF5I | GGATG | 3 cut(s) | 55, 232, 541 |
| BstFNI | CGCG | 3 cut(s) | 57, 261, 362 |
| BstHHI | GCGC | 2 cut(s) | 263, 316 |
| BstKTI | GATC | 3 cut(s) | 177, 445, 580 |
| BstMAI | GTCTC | 1 cut(s) | 2 |
| BstMBI | GATC | 3 cut(s) | 174, 442, 577 |
| BstMCI | CGRYCG | 1 cut(s) | 103 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 50, 203, 269, 379 |
| BstNI | CCWGG | 2 cut(s) | 353, 593 |
| BstSCI | CCNGG | 3 cut(s) | 236, 351, 591 |
| BstUI | CGCG | 3 cut(s) | 57, 261, 362 |
| BstV1I | GCAGC | 6 cut(s) | 256, 382, 385, 388, 594, 622 |
| BstX2I | RGATCY | 1 cut(s) | 174 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 390 |
| BstYI | RGATCY | 1 cut(s) | 174 |
| BsuRI | GGCC | 1 cut(s) | 376 |
| BtgI | CCRYGG | 2 cut(s) | 55, 276 |
| BtgZI | GCGATG | 1 cut(s) | 54 |
| BtsCI | GGATG | 3 cut(s) | 55, 232, 541 |
| BtsI | GCAGTG | 2 cut(s) | 342, 436 |
| BtsIMutI | CAGTG | 2 cut(s) | 342, 436 |
| Cac8I | GCNNGC | 6 cut(s) | 55, 312, 384, 388, 612, 616 |
| CaiI | CAGNNNCTG | 1 cut(s) | 269 |
| CfoI | GCGC | 2 cut(s) | 263, 316 |
| Cfr10I | RCCGGY | 1 cut(s) | 610 |
| Cfr13I | GGNCC | 3 cut(s) | 142, 355, 449 |
| Cfr42I | CCGCGG | 1 cut(s) | 58 |
| CseI | GACGC | 2 cut(s) | 351, 559 |
| Csp6I | GTAC | 2 cut(s) | 419, 540 |
| CviAII | CATG | 1 cut(s) | 446 |
| CviQI | GTAC | 2 cut(s) | 419, 540 |
| DdeI | CTNAG | 3 cut(s) | 12, 242, 465 |
| DpnI | GATC | 3 cut(s) | 176, 444, 579 |
| DpnII | GATC | 3 cut(s) | 174, 442, 577 |
| DriI | GACNNNNNGTC | 2 cut(s) | 361, 555 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 361, 555 |
| Eco130I | CCWWGG | 1 cut(s) | 27 |
| Eco47I | GGWCC | 3 cut(s) | 142, 355, 449 |
| Eco57I | CTGAAG | 1 cut(s) | 158 |
| Eco88I | CYCGRG | 1 cut(s) | 528 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 137 |
| EcoRII | CCWGG | 2 cut(s) | 351, 591 |
| EcoT14I | CCWWGG | 1 cut(s) | 27 |
| EcoT22I | ATGCAT | 1 cut(s) | 463 |
| ErhI | CCWWGG | 1 cut(s) | 27 |
| FaeI | CATG | 1 cut(s) | 449 |
| FaiI | YATR | 8 cut(s) | 107, 304, 426, 447, 515, 545, 570, 652 |
| FaqI | GGGAC | 3 cut(s) | 98, 484, 543 |
| FatI | CATG | 1 cut(s) | 445 |
| FauI | CCCGC | 3 cut(s) | 62, 75, 511 |
| FbaI | TGATCA | 2 cut(s) | 442, 577 |
| Fnu4HI | GCNGC | 9 cut(s) | 195, 259, 270, 371, 374, 399, 402, 608, 636 |
| FokI | GGATG | 3 cut(s) | 62, 239, 548 |
| Fsp4HI | GCNGC | 9 cut(s) | 195, 259, 270, 371, 374, 399, 402, 608, 636 |
| FspBI | CTAG | 1 cut(s) | 149 |
| GlaI | GCGC | 2 cut(s) | 262, 315 |
| GluI | GCNGC | 9 cut(s) | 195, 259, 270, 371, 374, 399, 402, 608, 636 |
| GsaI | CCCAGC | 1 cut(s) | 115 |
| GsuI | CTGGAG | 2 cut(s) | 137, 432 |
| HaeIII | GGCC | 1 cut(s) | 376 |
| HapII | CCGG | 3 cut(s) | 238, 452, 611 |
| HgaI | GACGC | 2 cut(s) | 351, 559 |
| HhaI | GCGC | 2 cut(s) | 263, 316 |
| Hin1I | GRCGYC | 1 cut(s) | 551 |
| Hin1II | CATG | 1 cut(s) | 449 |
| Hin6I | GCGC | 2 cut(s) | 261, 314 |
| HinP1I | GCGC | 2 cut(s) | 261, 314 |
| HindIII | AAGCTT | 1 cut(s) | 308 |
| HinfI | GANTC | 2 cut(s) | 188, 556 |
| HpaII | CCGG | 3 cut(s) | 238, 452, 611 |
| HphI | GGTGA | 3 cut(s) | 446, 468, 559 |
| Hpy188I | TCNGA | 3 cut(s) | 493, 577, 582 |
| Hpy188III | TCNNGA | 1 cut(s) | 530 |
| Hpy99I | CGWCG | 1 cut(s) | 367 |
| HpyAV | CCTTC | 4 cut(s) | 133, 151, 188, 325 |
| HpyCH4III | ACNGT | 1 cut(s) | 277 |
| HpyCH4IV | ACGT | 1 cut(s) | 421 |
| HpyCH4V | TGCA | 1 cut(s) | 461 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 50, 203, 269, 379 |
| HpyF3I | CTNAG | 3 cut(s) | 12, 242, 465 |
| HpySE526I | ACGT | 1 cut(s) | 421 |
| Hsp92I | GRCGYC | 1 cut(s) | 551 |
| Hsp92II | CATG | 1 cut(s) | 449 |
| HspAI | GCGC | 2 cut(s) | 261, 314 |
| KroI | GCCGGC | 1 cut(s) | 610 |
| KroNI | GCCGGC | 1 cut(s) | 612 |
| Ksp22I | TGATCA | 2 cut(s) | 442, 577 |
| KspI | CCGCGG | 1 cut(s) | 58 |
| Kzo9I | GATC | 3 cut(s) | 174, 442, 577 |
| LmnI | GCTCC | 4 cut(s) | 118, 208, 255, 643 |
| Lsp1109I | GCAGC | 6 cut(s) | 256, 382, 385, 388, 594, 622 |
| LweI | GCATC | 4 cut(s) | 31, 40, 448, 470 |
| MaeI | CTAG | 1 cut(s) | 149 |
| MaeII | ACGT | 1 cut(s) | 421 |
| MaeIII | GTNAC | 2 cut(s) | 340, 547 |
| MalI | GATC | 3 cut(s) | 176, 444, 579 |
| MbiI | CCGCTC | 2 cut(s) | 82, 94 |
| MboI | GATC | 3 cut(s) | 174, 442, 577 |
| MflI | RGATCY | 1 cut(s) | 174 |
| MluCI | AATT | 1 cut(s) | 218 |
| MlyI | GAGTC | 1 cut(s) | 565 |
| Mph1103I | ATGCAT | 1 cut(s) | 463 |
| MroNI | GCCGGC | 1 cut(s) | 610 |
| MseI | TTAA | 4 cut(s) | 65, 162, 288, 597 |
| MspA1I | CMGCKG | 5 cut(s) | 57, 115, 373, 469, 607 |
| MspI | CCGG | 3 cut(s) | 238, 452, 611 |
| MspR9I | CCNGG | 3 cut(s) | 238, 353, 593 |
| MvaI | CCWGG | 2 cut(s) | 353, 593 |
| MvnI | CGCG | 3 cut(s) | 57, 261, 362 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 50, 203, 269, 379 |
| NaeI | GCCGGC | 1 cut(s) | 612 |
| NciI | CCSGG | 1 cut(s) | 238 |
| NdeII | GATC | 3 cut(s) | 174, 442, 577 |
| NgoMIV | GCCGGC | 1 cut(s) | 610 |
| NlaIII | CATG | 1 cut(s) | 449 |
| NlaIV | GGNNCC | 1 cut(s) | 257 |
| NmeAIII | GCCGAG | 2 cut(s) | 278, 579 |
| NmuCI | GTSAC | 2 cut(s) | 340, 547 |
| NsiI | ATGCAT | 1 cut(s) | 463 |
| PdiI | GCCGGC | 1 cut(s) | 612 |
| PfeI | GAWTC | 1 cut(s) | 188 |
| PkrI | GCNGC | 9 cut(s) | 196, 260, 271, 372, 375, 400, 403, 609, 637 |
| PleI | GAGTC | 1 cut(s) | 564 |
| PpsI | GAGTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 2 cut(s) | 351, 591 |
| PspFI | CCCAGC | 1 cut(s) | 111 |
| PspGI | CCWGG | 2 cut(s) | 351, 591 |
| PspN4I | GGNNCC | 1 cut(s) | 257 |
| PspPI | GGNCC | 3 cut(s) | 142, 355, 449 |
| PstNI | CAGNNNCTG | 1 cut(s) | 269 |
| PsuI | RGATCY | 1 cut(s) | 174 |
| PvuII | CAGCTG | 2 cut(s) | 115, 607 |
| RsaI | GTAC | 2 cut(s) | 420, 541 |
| RsaNI | GTAC | 2 cut(s) | 419, 540 |
| SacII | CCGCGG | 1 cut(s) | 58 |
| SaqAI | TTAA | 4 cut(s) | 65, 162, 288, 597 |
| SatI | GCNGC | 9 cut(s) | 195, 259, 270, 371, 374, 399, 402, 608, 636 |
| Sau3AI | GATC | 3 cut(s) | 174, 442, 577 |
| Sau96I | GGNCC | 3 cut(s) | 142, 355, 449 |
| SchI | GAGTC | 1 cut(s) | 565 |
| ScrFI | CCNGG | 3 cut(s) | 238, 353, 593 |
| SfaNI | GCATC | 4 cut(s) | 31, 40, 448, 470 |
| Sfr303I | CCGCGG | 1 cut(s) | 58 |
| SgrBI | CCGCGG | 1 cut(s) | 58 |
| SinI | GGWCC | 3 cut(s) | 142, 355, 449 |
| Sse9I | AATT | 1 cut(s) | 218 |
| SspMI | CTAG | 1 cut(s) | 149 |
| StyD4I | CCNGG | 3 cut(s) | 236, 351, 591 |
| StyI | CCWWGG | 1 cut(s) | 27 |
| TaaI | ACNGT | 1 cut(s) | 277 |
| TaiI | ACGT | 1 cut(s) | 424 |
| TaqI | TCGA | 2 cut(s) | 222, 365 |
| TasI | AATT | 1 cut(s) | 218 |
| TauI | GCSGC | 3 cut(s) | 197, 261, 376 |
| TfiI | GAWTC | 1 cut(s) | 188 |
| Tru1I | TTAA | 4 cut(s) | 65, 162, 288, 597 |
| Tru9I | TTAA | 4 cut(s) | 65, 162, 288, 597 |
| TscAI | CASTG | 2 cut(s) | 349, 436 |
| TseFI | GTSAC | 2 cut(s) | 340, 547 |
| TseI | GCWGC | 6 cut(s) | 269, 370, 398, 401, 607, 635 |
| Tsp45I | GTSAC | 2 cut(s) | 340, 547 |
| TspDTI | ATGAA | 1 cut(s) | 243 |
| TspGWI | ACGGA | 1 cut(s) | 335 |
| TspRI | CASTG | 2 cut(s) | 349, 436 |
| VpaK11BI | GGWCC | 3 cut(s) | 142, 355, 449 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 137 |
| XapI | RAATTY | 1 cut(s) | 218 |
| XspI | CTAG | 1 cut(s) | 149 |
| Zsp2I | ATGCAT | 1 cut(s) | 463 |