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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 4 cut(s) | 100, 322, 334, 501 |
| AccII | CGCG | 1 cut(s) | 44 |
| AclWI | GGATC | 3 cut(s) | 129, 193, 390 |
| AcoI | YGGCCR | 1 cut(s) | 112 |
| AcsI | RAATTY | 1 cut(s) | 53 |
| AcuI | CTGAAG | 1 cut(s) | 404 |
| AcyI | GRCGYC | 1 cut(s) | 259 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 73, 268, 321 |
| AgsI | TTSAA | 1 cut(s) | 307 |
| AjiI | CACGTC | 1 cut(s) | 346 |
| AjnI | CCWGG | 1 cut(s) | 476 |
| AluBI | AGCT | 3 cut(s) | 165, 220, 371 |
| AluI | AGCT | 3 cut(s) | 165, 220, 371 |
| Alw26I | GTCTC | 3 cut(s) | 159, 221, 352 |
| AlwI | GGATC | 3 cut(s) | 129, 193, 390 |
| Ama87I | CYCGRG | 2 cut(s) | 68, 329 |
| AoxI | GGCC | 1 cut(s) | 112 |
| ApeKI | GCWGC | 2 cut(s) | 16, 220 |
| ApoI | RAATTY | 1 cut(s) | 53 |
| AspLEI | GCGC | 1 cut(s) | 44 |
| AspS9I | GGNCC | 1 cut(s) | 325 |
| AsuHPI | GGTGA | 2 cut(s) | 80, 463 |
| AvaI | CYCGRG | 2 cut(s) | 68, 329 |
| AvaII | GGWCC | 1 cut(s) | 325 |
| BbvCI | CCTCAGC | 1 cut(s) | 188 |
| BbvI | GCAGC | 2 cut(s) | 3, 207 |
| BceAI | ACGGC | 1 cut(s) | 128 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 127, 161 |
| BciT130I | CCWGG | 1 cut(s) | 478 |
| BcoDI | GTCTC | 3 cut(s) | 159, 221, 352 |
| BfaI | CTAG | 3 cut(s) | 29, 104, 356 |
| BfmI | CTRYAG | 2 cut(s) | 17, 221 |
| BisI | GCNGC | 6 cut(s) | 17, 101, 221, 393, 435, 499 |
| BlsI | GCNGC | 6 cut(s) | 18, 102, 222, 394, 436, 500 |
| Bme1390I | CCNGG | 1 cut(s) | 478 |
| Bme18I | GGWCC | 1 cut(s) | 325 |
| BmeT110I | CYCGRG | 2 cut(s) | 68, 329 |
| BmgBI | CACGTC | 1 cut(s) | 346 |
| BmgT120I | GGNCC | 1 cut(s) | 325 |
| BmiI | GGNNCC | 1 cut(s) | 326 |
| BmrFI | CCNGG | 1 cut(s) | 478 |
| BmsI | GCATC | 2 cut(s) | 271, 280 |
| BpmI | CTGGAG | 1 cut(s) | 503 |
| Bpu10I | CCTNAGC | 1 cut(s) | 188 |
| BsaHI | GRCGYC | 1 cut(s) | 259 |
| BsaI | GGTCTC | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 3 cut(s) | 202, 267, 295 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 332, 362 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 73, 268, 321 |
| Bse118I | RCCGGY | 1 cut(s) | 114 |
| BseBI | CCWGG | 1 cut(s) | 478 |
| BseDI | CCNNGG | 3 cut(s) | 202, 267, 295 |
| BseGI | GGATG | 2 cut(s) | 253, 295 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 73, 268, 321 |
| BseMII | CTCAG | 2 cut(s) | 179, 480 |
| BseRI | GAGGAG | 1 cut(s) | 209 |
| BseXI | GCAGC | 2 cut(s) | 3, 207 |
| BseYI | CCCAGC | 1 cut(s) | 5 |
| Bsh1236I | CGCG | 1 cut(s) | 44 |
| BshFI | GGCC | 1 cut(s) | 114 |
| BsiHKCI | CYCGRG | 2 cut(s) | 68, 329 |
| BsiSI | CCGG | 1 cut(s) | 115 |
| BslFI | GGGAC | 1 cut(s) | 338 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 73, 268, 321 |
| BsmAI | GTCTC | 3 cut(s) | 159, 221, 352 |
| BsmBI | CGTCTC | 1 cut(s) | 352 |
| BsmFI | GGGAC | 1 cut(s) | 338 |
| BsmI | GAATGC | 1 cut(s) | 281 |
| BsnI | GGCC | 1 cut(s) | 114 |
| Bso31I | GGTCTC | 1 cut(s) | 221 |
| BsoBI | CYCGRG | 2 cut(s) | 68, 329 |
| Bsp143I | GATC | 3 cut(s) | 121, 198, 382 |
| BspANI | GGCC | 1 cut(s) | 114 |
| BspCNI | CTCAG | 2 cut(s) | 180, 481 |
| BspFNI | CGCG | 1 cut(s) | 44 |
| BspLI | GGNNCC | 1 cut(s) | 326 |
| BspMAI | CTGCAG | 2 cut(s) | 21, 225 |
| BspPI | GGATC | 3 cut(s) | 129, 193, 390 |
| BspQI | GCTCTTC | 1 cut(s) | 488 |
| BspTNI | GGTCTC | 1 cut(s) | 221 |
| BsrBI | CCGCTC | 4 cut(s) | 100, 322, 334, 501 |
| BsrFI | RCCGGY | 1 cut(s) | 114 |
| BssAI | RCCGGY | 1 cut(s) | 114 |
| BssECI | CCNNGG | 3 cut(s) | 202, 267, 295 |
| BssMI | GATC | 3 cut(s) | 121, 198, 382 |
| BssNI | GRCGYC | 1 cut(s) | 259 |
| BssT1I | CCWWGG | 2 cut(s) | 202, 267 |
| Bst2UI | CCWGG | 1 cut(s) | 478 |
| Bst4CI | ACNGT | 1 cut(s) | 153 |
| Bst6I | CTCTTC | 1 cut(s) | 488 |
| BstACI | GRCGYC | 1 cut(s) | 259 |
| BstDEI | CTNAG | 4 cut(s) | 188, 402, 489, 504 |
| BstDSI | CCRYGG | 1 cut(s) | 295 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 266 |
| BstF5I | GGATG | 2 cut(s) | 253, 295 |
| BstFNI | CGCG | 1 cut(s) | 44 |
| BstHHI | GCGC | 1 cut(s) | 44 |
| BstKTI | GATC | 3 cut(s) | 124, 201, 385 |
| BstMAI | GTCTC | 3 cut(s) | 159, 221, 352 |
| BstMBI | GATC | 3 cut(s) | 121, 198, 382 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 290, 398, 443 |
| BstNI | CCWGG | 1 cut(s) | 478 |
| BstSCI | CCNGG | 1 cut(s) | 476 |
| BstSFI | CTRYAG | 2 cut(s) | 17, 221 |
| BstUI | CGCG | 1 cut(s) | 44 |
| BstV1I | GCAGC | 2 cut(s) | 3, 207 |
| BstX2I | RGATCY | 1 cut(s) | 198 |
| BstYI | RGATCY | 1 cut(s) | 198 |
| BsuRI | GGCC | 1 cut(s) | 114 |
| BtgI | CCRYGG | 1 cut(s) | 295 |
| BtgZI | GCGATG | 1 cut(s) | 294 |
| BtrI | CACGTC | 1 cut(s) | 346 |
| BtsCI | GGATG | 2 cut(s) | 253, 295 |
| CfoI | GCGC | 1 cut(s) | 44 |
| Cfr10I | RCCGGY | 1 cut(s) | 114 |
| Cfr13I | GGNCC | 1 cut(s) | 325 |
| CseI | GACGC | 2 cut(s) | 118, 267 |
| DdeI | CTNAG | 4 cut(s) | 188, 402, 489, 504 |
| DpnI | GATC | 3 cut(s) | 123, 200, 384 |
| DpnII | GATC | 3 cut(s) | 121, 198, 382 |
| EaeI | YGGCCR | 1 cut(s) | 112 |
| Eam1104I | CTCTTC | 1 cut(s) | 488 |
| EarI | CTCTTC | 1 cut(s) | 488 |
| EciI | GGCGGA | 2 cut(s) | 122, 260 |
| Eco130I | CCWWGG | 2 cut(s) | 202, 267 |
| Eco31I | GGTCTC | 1 cut(s) | 221 |
| Eco47I | GGWCC | 1 cut(s) | 325 |
| Eco57I | CTGAAG | 1 cut(s) | 404 |
| Eco88I | CYCGRG | 2 cut(s) | 68, 329 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 266 |
| EcoO109I | RGGNCCY | 1 cut(s) | 325 |
| EcoRII | CCWGG | 1 cut(s) | 476 |
| EcoT14I | CCWWGG | 2 cut(s) | 202, 267 |
| ErhI | CCWWGG | 2 cut(s) | 202, 267 |
| Esp3I | CGTCTC | 1 cut(s) | 352 |
| FaiI | YATR | 3 cut(s) | 48, 287, 368 |
| FaqI | GGGAC | 1 cut(s) | 338 |
| FauI | CCCGC | 2 cut(s) | 315, 417 |
| Fnu4HI | GCNGC | 6 cut(s) | 17, 101, 221, 393, 435, 499 |
| FokI | GGATG | 2 cut(s) | 260, 302 |
| Fsp4HI | GCNGC | 6 cut(s) | 17, 101, 221, 393, 435, 499 |
| FspBI | CTAG | 3 cut(s) | 29, 104, 356 |
| GlaI | GCGC | 1 cut(s) | 43 |
| GluI | GCNGC | 6 cut(s) | 17, 101, 221, 393, 435, 499 |
| GsaI | CCCAGC | 1 cut(s) | 9 |
| GsuI | CTGGAG | 1 cut(s) | 503 |
| HaeIII | GGCC | 1 cut(s) | 114 |
| HapII | CCGG | 1 cut(s) | 115 |
| HgaI | GACGC | 2 cut(s) | 118, 267 |
| HhaI | GCGC | 1 cut(s) | 44 |
| Hin1I | GRCGYC | 1 cut(s) | 259 |
| Hin6I | GCGC | 1 cut(s) | 42 |
| HinP1I | GCGC | 1 cut(s) | 42 |
| HinfI | GANTC | 3 cut(s) | 32, 415, 428 |
| HpaII | CCGG | 1 cut(s) | 115 |
| HphI | GGTGA | 2 cut(s) | 80, 463 |
| Hpy188I | TCNGA | 1 cut(s) | 126 |
| Hpy188III | TCNNGA | 3 cut(s) | 29, 58, 211 |
| Hpy99I | CGWCG | 1 cut(s) | 261 |
| HpyAV | CCTTC | 1 cut(s) | 46 |
| HpyCH4III | ACNGT | 1 cut(s) | 153 |
| HpyCH4IV | ACGT | 1 cut(s) | 345 |
| HpyCH4V | TGCA | 3 cut(s) | 19, 148, 223 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 290, 398, 443 |
| HpyF3I | CTNAG | 4 cut(s) | 188, 402, 489, 504 |
| HpySE526I | ACGT | 1 cut(s) | 345 |
| Hsp92I | GRCGYC | 1 cut(s) | 259 |
| HspAI | GCGC | 1 cut(s) | 42 |
| Kzo9I | GATC | 3 cut(s) | 121, 198, 382 |
| LguI | GCTCTTC | 1 cut(s) | 488 |
| LmnI | GCTCC | 2 cut(s) | 126, 217 |
| LpnPI | CCDG | 9 cut(s) | 5, 71, 128, 209, 224, 275, 463, 467, 490 |
| Lsp1109I | GCAGC | 2 cut(s) | 3, 207 |
| LweI | GCATC | 2 cut(s) | 271, 280 |
| MaeI | CTAG | 3 cut(s) | 29, 104, 356 |
| MaeII | ACGT | 1 cut(s) | 345 |
| MalI | GATC | 3 cut(s) | 123, 200, 384 |
| MbiI | CCGCTC | 4 cut(s) | 100, 322, 334, 501 |
| MboI | GATC | 3 cut(s) | 121, 198, 382 |
| MboII | GAAGA | 2 cut(s) | 410, 505 |
| MflI | RGATCY | 1 cut(s) | 198 |
| MluCI | AATT | 1 cut(s) | 53 |
| MlyI | GAGTC | 2 cut(s) | 26, 437 |
| MmeI | TCCRAC | 2 cut(s) | 99, 441 |
| MspA1I | CMGCKG | 1 cut(s) | 424 |
| MspI | CCGG | 1 cut(s) | 115 |
| MspR9I | CCNGG | 1 cut(s) | 478 |
| Mva1269I | GAATGC | 1 cut(s) | 281 |
| MvaI | CCWGG | 1 cut(s) | 478 |
| MvnI | CGCG | 1 cut(s) | 44 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 290, 398, 443 |
| NdeII | GATC | 3 cut(s) | 121, 198, 382 |
| NlaIV | GGNNCC | 1 cut(s) | 326 |
| NmeAIII | GCCGAG | 1 cut(s) | 146 |
| PaeR7I | CTCGAG | 1 cut(s) | 329 |
| PciSI | GCTCTTC | 1 cut(s) | 488 |
| PctI | GAATGC | 1 cut(s) | 281 |
| PfeI | GAWTC | 1 cut(s) | 415 |
| PflFI | GACNNNGTC | 1 cut(s) | 344 |
| PkrI | GCNGC | 6 cut(s) | 18, 102, 222, 394, 436, 500 |
| PleI | GAGTC | 2 cut(s) | 26, 436 |
| PpsI | GAGTC | 2 cut(s) | 26, 436 |
| PpuMI | RGGWCCY | 1 cut(s) | 325 |
| Psp5II | RGGWCCY | 1 cut(s) | 325 |
| Psp6I | CCWGG | 1 cut(s) | 476 |
| PspFI | CCCAGC | 1 cut(s) | 5 |
| PspGI | CCWGG | 1 cut(s) | 476 |
| PspN4I | GGNNCC | 1 cut(s) | 326 |
| PspPI | GGNCC | 1 cut(s) | 325 |
| PspPPI | RGGWCCY | 1 cut(s) | 325 |
| PspXI | VCTCGAGB | 1 cut(s) | 329 |
| PstI | CTGCAG | 2 cut(s) | 21, 225 |
| PsuI | RGATCY | 1 cut(s) | 198 |
| PsyI | GACNNNGTC | 1 cut(s) | 344 |
| SapI | GCTCTTC | 1 cut(s) | 488 |
| SatI | GCNGC | 6 cut(s) | 17, 101, 221, 393, 435, 499 |
| Sau3AI | GATC | 3 cut(s) | 121, 198, 382 |
| Sau96I | GGNCC | 1 cut(s) | 325 |
| SchI | GAGTC | 2 cut(s) | 26, 437 |
| ScrFI | CCNGG | 1 cut(s) | 478 |
| SfaNI | GCATC | 2 cut(s) | 271, 280 |
| SfcI | CTRYAG | 2 cut(s) | 17, 221 |
| Sfr274I | CTCGAG | 1 cut(s) | 329 |
| SinI | GGWCC | 1 cut(s) | 325 |
| SlaI | CTCGAG | 1 cut(s) | 329 |
| SmlI | CTYRAG | 1 cut(s) | 329 |
| SmoI | CTYRAG | 1 cut(s) | 329 |
| Sse9I | AATT | 1 cut(s) | 53 |
| SspMI | CTAG | 3 cut(s) | 29, 104, 356 |
| StyD4I | CCNGG | 1 cut(s) | 476 |
| StyI | CCWWGG | 2 cut(s) | 202, 267 |
| TaaI | ACNGT | 1 cut(s) | 153 |
| TaiI | ACGT | 1 cut(s) | 348 |
| TaqI | TCGA | 1 cut(s) | 330 |
| TasI | AATT | 1 cut(s) | 53 |
| TauI | GCSGC | 4 cut(s) | 103, 395, 437, 501 |
| TfiI | GAWTC | 1 cut(s) | 415 |
| TseI | GCWGC | 2 cut(s) | 16, 220 |
| Tth111I | GACNNNGTC | 1 cut(s) | 344 |
| VpaK11BI | GGWCC | 1 cut(s) | 325 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 266 |
| XapI | RAATTY | 1 cut(s) | 53 |
| XbaI | TCTAGA | 1 cut(s) | 28 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 238 |
| XhoI | CTCGAG | 1 cut(s) | 329 |
| XspI | CTAG | 3 cut(s) | 29, 104, 356 |