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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 223 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 233 |
| AccII | CGCG | 1 cut(s) | 450 |
| AciI | CCGC | 5 cut(s) | 163, 324, 409, 412, 450 |
| AcsI | RAATTY | 1 cut(s) | 263 |
| AdeI | CACNNNGTG | 1 cut(s) | 233 |
| AfeI | AGCGCT | 1 cut(s) | 21 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 233 |
| AflIII | ACRYGT | 1 cut(s) | 435 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 272, 304 |
| AluBI | AGCT | 3 cut(s) | 457, 508, 524 |
| AluI | AGCT | 3 cut(s) | 457, 508, 524 |
| Alw26I | GTCTC | 2 cut(s) | 143, 471 |
| Ama87I | CYCGRG | 2 cut(s) | 109, 314 |
| Aor51HI | AGCGCT | 1 cut(s) | 21 |
| AoxI | GGCC | 3 cut(s) | 38, 159, 381 |
| ApaI | GGGCCC | 2 cut(s) | 42, 163 |
| ApeKI | GCWGC | 1 cut(s) | 122 |
| ApoI | RAATTY | 1 cut(s) | 263 |
| AspLEI | GCGC | 1 cut(s) | 22 |
| AspS9I | GGNCC | 4 cut(s) | 38, 39, 159, 160 |
| AsuHPI | GGTGA | 2 cut(s) | 140, 211 |
| AvaI | CYCGRG | 2 cut(s) | 109, 314 |
| AxyI | CCTNAGG | 1 cut(s) | 99 |
| BaeGI | GKGCMC | 2 cut(s) | 42, 163 |
| BanI | GGYRCC | 1 cut(s) | 223 |
| BanII | GRGCYC | 3 cut(s) | 42, 116, 163 |
| BbvI | GCAGC | 1 cut(s) | 109 |
| BccI | CCATC | 1 cut(s) | 326 |
| BciVI | GTATCC | 1 cut(s) | 511 |
| BcoDI | GTCTC | 2 cut(s) | 143, 471 |
| BfaI | CTAG | 2 cut(s) | 395, 509 |
| BfmI | CTRYAG | 1 cut(s) | 527 |
| BfoI | RGCGCY | 1 cut(s) | 23 |
| BfuI | GTATCC | 1 cut(s) | 511 |
| BisI | GCNGC | 3 cut(s) | 123, 410, 413 |
| BlpI | GCTNAGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 3 cut(s) | 124, 411, 414 |
| BmeT110I | CYCGRG | 2 cut(s) | 109, 314 |
| BmgT120I | GGNCC | 4 cut(s) | 38, 39, 159, 160 |
| BmiI | GGNNCC | 6 cut(s) | 40, 41, 96, 160, 161, 225 |
| BmsI | GCATC | 1 cut(s) | 433 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 180 |
| BpuEI | CTTGAG | 1 cut(s) | 503 |
| BsaAI | YACGTR | 1 cut(s) | 499 |
| BsaI | GGTCTC | 2 cut(s) | 143, 471 |
| BsaJI | CCNNGG | 3 cut(s) | 204, 384, 420 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 233 |
| Bse118I | RCCGGY | 1 cut(s) | 196 |
| Bse1I | ACTGG | 2 cut(s) | 243, 364 |
| Bse21I | CCTNAGG | 1 cut(s) | 99 |
| BseDI | CCNNGG | 3 cut(s) | 204, 384, 420 |
| BseGI | GGATG | 2 cut(s) | 337, 448 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 233 |
| BseMII | CTCAG | 2 cut(s) | 113, 332 |
| BseNI | ACTGG | 2 cut(s) | 243, 364 |
| BseSI | GKGCMC | 2 cut(s) | 42, 163 |
| BseXI | GCAGC | 1 cut(s) | 109 |
| BseYI | CCCAGC | 1 cut(s) | 215 |
| Bsh1236I | CGCG | 1 cut(s) | 450 |
| BshFI | GGCC | 3 cut(s) | 40, 161, 383 |
| BshNI | GGYRCC | 1 cut(s) | 223 |
| BsiHKCI | CYCGRG | 2 cut(s) | 109, 314 |
| BsiSI | CCGG | 1 cut(s) | 197 |
| BslFI | GGGAC | 1 cut(s) | 349 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 233 |
| BsmAI | GTCTC | 2 cut(s) | 143, 471 |
| BsmFI | GGGAC | 1 cut(s) | 349 |
| BsmI | GAATGC | 1 cut(s) | 434 |
| BsnI | GGCC | 3 cut(s) | 40, 161, 383 |
| Bso31I | GGTCTC | 2 cut(s) | 143, 471 |
| BsoBI | CYCGRG | 2 cut(s) | 109, 314 |
| Bsp120I | GGGCCC | 2 cut(s) | 38, 159 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 116, 163 |
| Bsp143I | GATC | 1 cut(s) | 351 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 180 |
| Bsp19I | CCATGG | 1 cut(s) | 204 |
| BspACI | CCGC | 5 cut(s) | 163, 324, 409, 412, 450 |
| BspANI | GGCC | 3 cut(s) | 40, 161, 383 |
| BspCNI | CTCAG | 2 cut(s) | 112, 333 |
| BspFNI | CGCG | 1 cut(s) | 450 |
| BspLI | GGNNCC | 6 cut(s) | 40, 41, 96, 160, 161, 225 |
| BspMAI | CTGCAG | 1 cut(s) | 531 |
| BspT107I | GGYRCC | 1 cut(s) | 223 |
| BspTNI | GGTCTC | 2 cut(s) | 143, 471 |
| BsrFI | RCCGGY | 1 cut(s) | 196 |
| BsrI | ACTGG | 2 cut(s) | 243, 364 |
| BssAI | RCCGGY | 1 cut(s) | 196 |
| BssECI | CCNNGG | 3 cut(s) | 204, 384, 420 |
| BssMI | GATC | 1 cut(s) | 351 |
| BssT1I | CCWWGG | 3 cut(s) | 204, 384, 420 |
| Bst6I | CTCTTC | 1 cut(s) | 342 |
| BstBAI | YACGTR | 1 cut(s) | 499 |
| BstC8I | GCNNGC | 5 cut(s) | 24, 163, 186, 326, 448 |
| BstDEI | CTNAG | 3 cut(s) | 99, 180, 341 |
| BstDSI | CCRYGG | 1 cut(s) | 204 |
| BstEII | GGTNACC | 1 cut(s) | 199 |
| BstF5I | GGATG | 2 cut(s) | 337, 448 |
| BstFNI | CGCG | 1 cut(s) | 450 |
| BstH2I | RGCGCY | 1 cut(s) | 23 |
| BstHHI | GCGC | 1 cut(s) | 22 |
| BstKTI | GATC | 1 cut(s) | 354 |
| BstMAI | GTCTC | 2 cut(s) | 143, 471 |
| BstMBI | GATC | 1 cut(s) | 351 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 185 |
| BstPI | GGTNACC | 1 cut(s) | 199 |
| BstSFI | CTRYAG | 1 cut(s) | 527 |
| BstSLI | GKGCMC | 2 cut(s) | 42, 163 |
| BstUI | CGCG | 1 cut(s) | 450 |
| BstV1I | GCAGC | 1 cut(s) | 109 |
| Bsu36I | CCTNAGG | 1 cut(s) | 99 |
| BsuI | GTATCC | 1 cut(s) | 511 |
| BsuRI | GGCC | 3 cut(s) | 40, 161, 383 |
| BtgI | CCRYGG | 1 cut(s) | 204 |
| BtsCI | GGATG | 2 cut(s) | 337, 448 |
| Cac8I | GCNNGC | 5 cut(s) | 24, 163, 186, 326, 448 |
| CfoI | GCGC | 1 cut(s) | 22 |
| Cfr10I | RCCGGY | 1 cut(s) | 196 |
| Cfr13I | GGNCC | 4 cut(s) | 38, 39, 159, 160 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 16, 51, 126, 161 |
| CviAII | CATG | 1 cut(s) | 205 |
| DdeI | CTNAG | 3 cut(s) | 99, 180, 341 |
| DpnI | GATC | 1 cut(s) | 353 |
| DpnII | GATC | 1 cut(s) | 351 |
| DraIII | CACNNNGTG | 1 cut(s) | 233 |
| Eam1104I | CTCTTC | 1 cut(s) | 342 |
| EarI | CTCTTC | 1 cut(s) | 342 |
| Eco130I | CCWWGG | 3 cut(s) | 204, 384, 420 |
| Eco24I | GRGCYC | 3 cut(s) | 42, 116, 163 |
| Eco31I | GGTCTC | 2 cut(s) | 143, 471 |
| Eco47III | AGCGCT | 1 cut(s) | 21 |
| Eco81I | CCTNAGG | 1 cut(s) | 99 |
| Eco88I | CYCGRG | 2 cut(s) | 109, 314 |
| Eco91I | GGTNACC | 1 cut(s) | 199 |
| EcoO109I | RGGNCCY | 2 cut(s) | 39, 159 |
| EcoO65I | GGTNACC | 1 cut(s) | 199 |
| EcoT14I | CCWWGG | 3 cut(s) | 204, 384, 420 |
| EcoT38I | GRGCYC | 3 cut(s) | 42, 116, 163 |
| ErhI | CCWWGG | 3 cut(s) | 204, 384, 420 |
| FaeI | CATG | 1 cut(s) | 208 |
| FaiI | YATR | 4 cut(s) | 206, 258, 306, 521 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 446, 478 |
| FaqI | GGGAC | 1 cut(s) | 349 |
| FatI | CATG | 1 cut(s) | 204 |
| FauI | CCCGC | 2 cut(s) | 170, 317 |
| Fnu4HI | GCNGC | 3 cut(s) | 123, 410, 413 |
| FokI | GGATG | 2 cut(s) | 344, 455 |
| FriOI | GRGCYC | 3 cut(s) | 42, 116, 163 |
| Fsp4HI | GCNGC | 3 cut(s) | 123, 410, 413 |
| FspBI | CTAG | 2 cut(s) | 395, 509 |
| GlaI | GCGC | 1 cut(s) | 21 |
| GluI | GCNGC | 3 cut(s) | 123, 410, 413 |
| GsaI | CCCAGC | 1 cut(s) | 219 |
| HaeII | RGCGCY | 1 cut(s) | 23 |
| HaeIII | GGCC | 3 cut(s) | 40, 161, 383 |
| HapII | CCGG | 1 cut(s) | 197 |
| HhaI | GCGC | 1 cut(s) | 22 |
| Hin1II | CATG | 1 cut(s) | 208 |
| Hin6I | GCGC | 1 cut(s) | 20 |
| HinP1I | GCGC | 1 cut(s) | 20 |
| HinfI | GANTC | 2 cut(s) | 242, 337 |
| HpaII | CCGG | 1 cut(s) | 197 |
| HphI | GGTGA | 2 cut(s) | 140, 211 |
| Hpy166II | GTNNAC | 1 cut(s) | 236 |
| Hpy188I | TCNGA | 1 cut(s) | 342 |
| Hpy8I | GTNNAC | 1 cut(s) | 236 |
| HpyAV | CCTTC | 4 cut(s) | 4, 40, 46, 169 |
| HpyCH4IV | ACGT | 2 cut(s) | 437, 498 |
| HpyCH4V | TGCA | 2 cut(s) | 514, 529 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 185 |
| HpyF3I | CTNAG | 3 cut(s) | 99, 180, 341 |
| HpySE526I | ACGT | 2 cut(s) | 437, 498 |
| Hsp92II | CATG | 1 cut(s) | 208 |
| HspAI | GCGC | 1 cut(s) | 20 |
| Kzo9I | GATC | 1 cut(s) | 351 |
| LmnI | GCTCC | 1 cut(s) | 94 |
| Lsp1109I | GCAGC | 1 cut(s) | 109 |
| LweI | GCATC | 1 cut(s) | 433 |
| MaeI | CTAG | 2 cut(s) | 395, 509 |
| MaeII | ACGT | 2 cut(s) | 437, 498 |
| MaeIII | GTNAC | 2 cut(s) | 58, 199 |
| MalI | GATC | 1 cut(s) | 353 |
| MboI | GATC | 1 cut(s) | 351 |
| MboII | GAAGA | 2 cut(s) | 184, 359 |
| MfeI | CAATTG | 1 cut(s) | 81 |
| MhlI | GDGCHC | 3 cut(s) | 42, 116, 163 |
| MluCI | AATT | 2 cut(s) | 81, 263 |
| MlyI | GAGTC | 2 cut(s) | 236, 331 |
| MmeI | TCCRAC | 3 cut(s) | 72, 348, 420 |
| MnlI | CCTC | 9 cut(s) | 79, 108, 118, 127, 214, 311, 336, 373, 394 |
| MslI | CAYNNNNRTG | 1 cut(s) | 303 |
| MspI | CCGG | 1 cut(s) | 197 |
| MunI | CAATTG | 1 cut(s) | 81 |
| Mva1269I | GAATGC | 1 cut(s) | 434 |
| MvnI | CGCG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 185 |
| NcoI | CCATGG | 1 cut(s) | 204 |
| NdeII | GATC | 1 cut(s) | 351 |
| NlaIII | CATG | 1 cut(s) | 208 |
| NlaIV | GGNNCC | 6 cut(s) | 40, 41, 96, 160, 161, 225 |
| NmuCI | GTSAC | 2 cut(s) | 58, 199 |
| PaeR7I | CTCGAG | 1 cut(s) | 109 |
| PctI | GAATGC | 1 cut(s) | 434 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 233 |
| PkrI | GCNGC | 3 cut(s) | 124, 411, 414 |
| PleI | GAGTC | 2 cut(s) | 236, 331 |
| PpsI | GAGTC | 2 cut(s) | 236, 331 |
| Ppu21I | YACGTR | 1 cut(s) | 499 |
| PspEI | GGTNACC | 1 cut(s) | 199 |
| PspFI | CCCAGC | 1 cut(s) | 215 |
| PspN4I | GGNNCC | 6 cut(s) | 40, 41, 96, 160, 161, 225 |
| PspOMI | GGGCCC | 2 cut(s) | 38, 159 |
| PspPI | GGNCC | 4 cut(s) | 38, 39, 159, 160 |
| PspXI | VCTCGAGB | 1 cut(s) | 109 |
| PstI | CTGCAG | 1 cut(s) | 531 |
| RseI | CAYNNNNRTG | 1 cut(s) | 303 |
| SatI | GCNGC | 3 cut(s) | 123, 410, 413 |
| Sau3AI | GATC | 1 cut(s) | 351 |
| Sau96I | GGNCC | 4 cut(s) | 38, 39, 159, 160 |
| SchI | GAGTC | 2 cut(s) | 236, 331 |
| SduI | GDGCHC | 3 cut(s) | 42, 116, 163 |
| SfaNI | GCATC | 1 cut(s) | 433 |
| SfcI | CTRYAG | 1 cut(s) | 527 |
| Sfr274I | CTCGAG | 1 cut(s) | 109 |
| SlaI | CTCGAG | 1 cut(s) | 109 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 303 |
| SmlI | CTYRAG | 2 cut(s) | 109, 482 |
| SmoI | CTYRAG | 2 cut(s) | 109, 482 |
| Sse9I | AATT | 2 cut(s) | 81, 263 |
| SsiI | CCGC | 5 cut(s) | 163, 324, 409, 412, 450 |
| SspMI | CTAG | 2 cut(s) | 395, 509 |
| StyI | CCWWGG | 3 cut(s) | 204, 384, 420 |
| TaiI | ACGT | 2 cut(s) | 440, 501 |
| TaqI | TCGA | 1 cut(s) | 110 |
| TasI | AATT | 2 cut(s) | 81, 263 |
| TauI | GCSGC | 2 cut(s) | 412, 415 |
| TseFI | GTSAC | 2 cut(s) | 58, 199 |
| TseI | GCWGC | 1 cut(s) | 122 |
| Tsp45I | GTSAC | 2 cut(s) | 58, 199 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 233 |
| XapI | RAATTY | 1 cut(s) | 263 |
| XhoI | CTCGAG | 1 cut(s) | 109 |
| XspI | CTAG | 2 cut(s) | 395, 509 |