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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 490 |
| AccB1I | GGYRCC | 3 cut(s) | 434, 470, 566 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 480, 673 |
| AccBSI | CCGCTC | 2 cut(s) | 178, 190 |
| AccII | CGCG | 2 cut(s) | 357, 714 |
| AclWI | GGATC | 2 cut(s) | 265, 724 |
| AcoI | YGGCCR | 3 cut(s) | 162, 246, 441 |
| AcuI | CTGAAG | 4 cut(s) | 123, 260, 777, 792 |
| AcyI | GRCGYC | 2 cut(s) | 471, 491 |
| AfaI | GTAC | 2 cut(s) | 383, 685 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 699 |
| AjnI | CCWGG | 4 cut(s) | 87, 183, 438, 672 |
| AleI | CACNNNNGTG | 1 cut(s) | 339 |
| AluBI | AGCT | 2 cut(s) | 515, 573 |
| AluI | AGCT | 2 cut(s) | 515, 573 |
| Alw21I | GWGCWC | 1 cut(s) | 45 |
| Alw26I | GTCTC | 1 cut(s) | 686 |
| AlwI | GGATC | 2 cut(s) | 265, 724 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 755 |
| Ama87I | CYCGRG | 3 cut(s) | 27, 574, 697 |
| AoxI | GGCC | 8 cut(s) | 84, 126, 162, 246, 429, 441, 547, 664 |
| ApeKI | GCWGC | 5 cut(s) | 388, 457, 460, 508, 533 |
| AspLEI | GCGC | 3 cut(s) | 359, 473, 596 |
| AspS9I | GGNCC | 4 cut(s) | 85, 181, 548, 664 |
| AsuHPI | GGTGA | 1 cut(s) | 335 |
| AvaI | CYCGRG | 3 cut(s) | 27, 574, 697 |
| AvaII | GGWCC | 1 cut(s) | 181 |
| BaeGI | GKGCMC | 1 cut(s) | 439 |
| BalI | TGGCCA | 1 cut(s) | 443 |
| BanI | GGYRCC | 3 cut(s) | 434, 470, 566 |
| Bbv12I | GWGCWC | 1 cut(s) | 45 |
| BbvCI | CCTCAGC | 2 cut(s) | 303, 345 |
| BbvI | GCAGC | 5 cut(s) | 400, 444, 472, 520, 545 |
| BccI | CCATC | 3 cut(s) | 371, 557, 674 |
| BceAI | ACGGC | 1 cut(s) | 149 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 119, 153 |
| BciT130I | CCWGG | 4 cut(s) | 89, 185, 440, 674 |
| BcoDI | GTCTC | 1 cut(s) | 686 |
| BfmI | CTRYAG | 1 cut(s) | 458 |
| BfoI | RGCGCY | 2 cut(s) | 474, 597 |
| BfuAI | ACCTGC | 1 cut(s) | 490 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 299 |
| Bme1390I | CCNGG | 4 cut(s) | 89, 185, 440, 674 |
| Bme18I | GGWCC | 1 cut(s) | 181 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 699 |
| BmeT110I | CYCGRG | 3 cut(s) | 27, 574, 697 |
| BmgT120I | GGNCC | 4 cut(s) | 85, 181, 548, 664 |
| BmiI | GGNNCC | 6 cut(s) | 182, 353, 436, 472, 550, 568 |
| BmrFI | CCNGG | 4 cut(s) | 89, 185, 440, 674 |
| BmrI | ACTGGG | 2 cut(s) | 490, 625 |
| BmsI | GCATC | 5 cut(s) | 23, 127, 136, 511, 757 |
| BmuI | ACTGGG | 2 cut(s) | 490, 625 |
| BpmI | CTGGAG | 1 cut(s) | 206 |
| Bpu10I | CCTNAGC | 3 cut(s) | 303, 345, 516 |
| BsaHI | GRCGYC | 2 cut(s) | 471, 491 |
| BsaI | GGTCTC | 1 cut(s) | 686 |
| BsaJI | CCNNGG | 6 cut(s) | 26, 87, 252, 438, 672, 712 |
| Bse118I | RCCGGY | 2 cut(s) | 391, 431 |
| Bse1I | ACTGG | 2 cut(s) | 485, 631 |
| BseBI | CCWGG | 4 cut(s) | 89, 185, 440, 674 |
| BseDI | CCNNGG | 6 cut(s) | 26, 87, 252, 438, 672, 712 |
| BseGI | GGATG | 3 cut(s) | 151, 526, 613 |
| BseMII | CTCAG | 4 cut(s) | 294, 329, 336, 569 |
| BseNI | ACTGG | 2 cut(s) | 485, 631 |
| BseRI | GAGGAG | 1 cut(s) | 65 |
| BseSI | GKGCMC | 1 cut(s) | 439 |
| BseXI | GCAGC | 5 cut(s) | 400, 444, 472, 520, 545 |
| BseYI | CCCAGC | 2 cut(s) | 615, 650 |
| Bsh1236I | CGCG | 2 cut(s) | 357, 714 |
| BshFI | GGCC | 8 cut(s) | 86, 128, 164, 248, 431, 443, 549, 666 |
| BshNI | GGYRCC | 3 cut(s) | 434, 470, 566 |
| BsiHKAI | GWGCWC | 1 cut(s) | 45 |
| BsiHKCI | CYCGRG | 3 cut(s) | 27, 574, 697 |
| BsiSI | CCGG | 2 cut(s) | 392, 432 |
| BslFI | GGGAC | 4 cut(s) | 86, 194, 211, 628 |
| BsmAI | GTCTC | 1 cut(s) | 686 |
| BsmFI | GGGAC | 4 cut(s) | 86, 194, 211, 628 |
| BsnI | GGCC | 8 cut(s) | 86, 128, 164, 248, 431, 443, 549, 666 |
| Bso31I | GGTCTC | 1 cut(s) | 686 |
| BsoBI | CYCGRG | 3 cut(s) | 27, 574, 697 |
| Bsp1286I | GDGCHC | 2 cut(s) | 45, 439 |
| Bsp143I | GATC | 4 cut(s) | 196, 238, 270, 716 |
| BspANI | GGCC | 8 cut(s) | 86, 128, 164, 248, 431, 443, 549, 666 |
| BspCNI | CTCAG | 4 cut(s) | 295, 330, 337, 568 |
| BspFNI | CGCG | 2 cut(s) | 357, 714 |
| BspLI | GGNNCC | 6 cut(s) | 182, 353, 436, 472, 550, 568 |
| BspMAI | CTGCAG | 1 cut(s) | 462 |
| BspMI | ACCTGC | 1 cut(s) | 490 |
| BspPI | GGATC | 2 cut(s) | 265, 724 |
| BspT107I | GGYRCC | 3 cut(s) | 434, 470, 566 |
| BspTNI | GGTCTC | 1 cut(s) | 686 |
| BsrBI | CCGCTC | 2 cut(s) | 178, 190 |
| BsrFI | RCCGGY | 2 cut(s) | 391, 431 |
| BsrI | ACTGG | 2 cut(s) | 485, 631 |
| BssAI | RCCGGY | 2 cut(s) | 391, 431 |
| BssECI | CCNNGG | 6 cut(s) | 26, 87, 252, 438, 672, 712 |
| BssMI | GATC | 4 cut(s) | 196, 238, 270, 716 |
| BssNI | GRCGYC | 2 cut(s) | 471, 491 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst2UI | CCWGG | 4 cut(s) | 89, 185, 440, 674 |
| Bst4CI | ACNGT | 2 cut(s) | 134, 315 |
| BstACI | GRCGYC | 2 cut(s) | 471, 491 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 146, 505 |
| BstC8I | GCNNGC | 8 cut(s) | 151, 393, 513, 571, 598, 664, 712, 750 |
| BstDEI | CTNAG | 6 cut(s) | 123, 303, 338, 345, 516, 555 |
| BstDSI | CCRYGG | 1 cut(s) | 712 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 122 |
| BstF5I | GGATG | 3 cut(s) | 151, 526, 613 |
| BstFNI | CGCG | 2 cut(s) | 357, 714 |
| BstH2I | RGCGCY | 2 cut(s) | 474, 597 |
| BstHHI | GCGC | 3 cut(s) | 359, 473, 596 |
| BstKTI | GATC | 4 cut(s) | 199, 241, 273, 719 |
| BstMAI | GTCTC | 1 cut(s) | 686 |
| BstMBI | GATC | 4 cut(s) | 196, 238, 270, 716 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 146, 299, 365, 505, 521, 530, 579, 602, 791 |
| BstNI | CCWGG | 4 cut(s) | 89, 185, 440, 674 |
| BstSCI | CCNGG | 4 cut(s) | 87, 183, 438, 672 |
| BstSFI | CTRYAG | 1 cut(s) | 458 |
| BstSLI | GKGCMC | 1 cut(s) | 439 |
| BstUI | CGCG | 2 cut(s) | 357, 714 |
| BstV1I | GCAGC | 5 cut(s) | 400, 444, 472, 520, 545 |
| BstX2I | RGATCY | 2 cut(s) | 270, 716 |
| BstYI | RGATCY | 2 cut(s) | 270, 716 |
| BsuRI | GGCC | 8 cut(s) | 86, 128, 164, 248, 431, 443, 549, 666 |
| BtgI | CCRYGG | 1 cut(s) | 712 |
| BtgZI | GCGATG | 1 cut(s) | 349 |
| BtsCI | GGATG | 3 cut(s) | 151, 526, 613 |
| BtsI | GCAGTG | 1 cut(s) | 147 |
| BtsIMutI | CAGTG | 1 cut(s) | 147 |
| BveI | ACCTGC | 1 cut(s) | 490 |
| Cac8I | GCNNGC | 8 cut(s) | 151, 393, 513, 571, 598, 664, 712, 750 |
| CaiI | CAGNNNCTG | 1 cut(s) | 755 |
| CfoI | GCGC | 3 cut(s) | 359, 473, 596 |
| Cfr10I | RCCGGY | 2 cut(s) | 391, 431 |
| Cfr13I | GGNCC | 4 cut(s) | 85, 181, 548, 664 |
| Cfr42I | CCGCGG | 1 cut(s) | 715 |
| CseI | GACGC | 1 cut(s) | 480 |
| Csp6I | GTAC | 2 cut(s) | 382, 684 |
| CviAII | CATG | 1 cut(s) | 505 |
| CviQI | GTAC | 2 cut(s) | 382, 684 |
| DdeI | CTNAG | 6 cut(s) | 123, 303, 338, 345, 516, 555 |
| DinI | GGCGCC | 1 cut(s) | 472 |
| DpnI | GATC | 4 cut(s) | 198, 240, 272, 718 |
| DpnII | GATC | 4 cut(s) | 196, 238, 270, 716 |
| DriI | GACNNNNNGTC | 1 cut(s) | 699 |
| EaeI | YGGCCR | 3 cut(s) | 162, 246, 441 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 699 |
| EciI | GGCGGA | 1 cut(s) | 410 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco31I | GGTCTC | 1 cut(s) | 686 |
| Eco47I | GGWCC | 1 cut(s) | 181 |
| Eco57I | CTGAAG | 4 cut(s) | 123, 260, 777, 792 |
| Eco88I | CYCGRG | 3 cut(s) | 27, 574, 697 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 122 |
| EcoO109I | RGGNCCY | 1 cut(s) | 181 |
| EcoRII | CCWGG | 4 cut(s) | 87, 183, 438, 672 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| EgeI | GGCGCC | 1 cut(s) | 472 |
| EheI | GGCGCC | 1 cut(s) | 472 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| FaeI | CATG | 1 cut(s) | 508 |
| FaiI | YATR | 4 cut(s) | 224, 402, 506, 669 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 580, 612 |
| FaqI | GGGAC | 4 cut(s) | 86, 194, 211, 628 |
| FatI | CATG | 1 cut(s) | 504 |
| FauI | CCCGC | 5 cut(s) | 171, 273, 575, 655, 719 |
| FokI | GGATG | 3 cut(s) | 158, 533, 620 |
| GlaI | GCGC | 3 cut(s) | 358, 472, 595 |
| GsaI | CCCAGC | 2 cut(s) | 619, 654 |
| GsuI | CTGGAG | 1 cut(s) | 206 |
| HaeII | RGCGCY | 2 cut(s) | 474, 597 |
| HaeIII | GGCC | 8 cut(s) | 86, 128, 164, 248, 431, 443, 549, 666 |
| HapII | CCGG | 2 cut(s) | 392, 432 |
| HgaI | GACGC | 1 cut(s) | 480 |
| HhaI | GCGC | 3 cut(s) | 359, 473, 596 |
| Hin1I | GRCGYC | 2 cut(s) | 471, 491 |
| Hin1II | CATG | 1 cut(s) | 508 |
| Hin6I | GCGC | 3 cut(s) | 357, 471, 594 |
| HinP1I | GCGC | 3 cut(s) | 357, 471, 594 |
| HincII | GTYRAC | 2 cut(s) | 414, 495 |
| HindII | GTYRAC | 2 cut(s) | 414, 495 |
| HinfI | GANTC | 5 cut(s) | 284, 377, 611, 622, 700 |
| HpaII | CCGG | 2 cut(s) | 392, 432 |
| HphI | GGTGA | 1 cut(s) | 335 |
| Hpy166II | GTNNAC | 2 cut(s) | 414, 495 |
| Hpy188I | TCNGA | 1 cut(s) | 637 |
| Hpy8I | GTNNAC | 2 cut(s) | 414, 495 |
| Hpy99I | CGWCG | 1 cut(s) | 532 |
| HpyAV | CCTTC | 6 cut(s) | 256, 284, 400, 421, 752, 767 |
| HpyCH4III | ACNGT | 2 cut(s) | 134, 315 |
| HpyCH4V | TGCA | 5 cut(s) | 67, 140, 235, 460, 508 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 146, 299, 365, 505, 521, 530, 579, 602, 791 |
| HpyF3I | CTNAG | 6 cut(s) | 123, 303, 338, 345, 516, 555 |
| Hsp92I | GRCGYC | 2 cut(s) | 471, 491 |
| Hsp92II | CATG | 1 cut(s) | 508 |
| HspAI | GCGC | 3 cut(s) | 357, 471, 594 |
| KasI | GGCGCC | 1 cut(s) | 470 |
| KroI | GCCGGC | 1 cut(s) | 391 |
| KroNI | GCCGGC | 1 cut(s) | 393 |
| KspI | CCGCGG | 1 cut(s) | 715 |
| Kzo9I | GATC | 4 cut(s) | 196, 238, 270, 716 |
| LmnI | GCTCC | 4 cut(s) | 40, 187, 351, 529 |
| Lsp1109I | GCAGC | 5 cut(s) | 400, 444, 472, 520, 545 |
| LweI | GCATC | 5 cut(s) | 23, 127, 136, 511, 757 |
| MalI | GATC | 4 cut(s) | 198, 240, 272, 718 |
| MbiI | CCGCTC | 2 cut(s) | 178, 190 |
| MboI | GATC | 4 cut(s) | 196, 238, 270, 716 |
| MflI | RGATCY | 2 cut(s) | 270, 716 |
| MhlI | GDGCHC | 2 cut(s) | 45, 439 |
| MlsI | TGGCCA | 1 cut(s) | 443 |
| MluCI | AATT | 2 cut(s) | 200, 209 |
| MluNI | TGGCCA | 1 cut(s) | 443 |
| Mly113I | GGCGCC | 1 cut(s) | 471 |
| MlyI | GAGTC | 5 cut(s) | 293, 386, 605, 616, 709 |
| MmeI | TCCRAC | 2 cut(s) | 297, 615 |
| Mox20I | TGGCCA | 1 cut(s) | 443 |
| MroNI | GCCGGC | 1 cut(s) | 391 |
| MscI | TGGCCA | 1 cut(s) | 443 |
| MseI | TTAA | 1 cut(s) | 309 |
| MslI | CAYNNNNRTG | 1 cut(s) | 339 |
| Msp20I | TGGCCA | 1 cut(s) | 443 |
| MspA1I | CMGCKG | 5 cut(s) | 153, 280, 371, 619, 714 |
| MspI | CCGG | 2 cut(s) | 392, 432 |
| MspR9I | CCNGG | 4 cut(s) | 89, 185, 440, 674 |
| MvaI | CCWGG | 4 cut(s) | 89, 185, 440, 674 |
| MvnI | CGCG | 2 cut(s) | 357, 714 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 146, 299, 365, 505, 521, 530, 579, 602, 791 |
| NaeI | GCCGGC | 1 cut(s) | 393 |
| NarI | GGCGCC | 1 cut(s) | 471 |
| NdeII | GATC | 4 cut(s) | 196, 238, 270, 716 |
| NgoMIV | GCCGGC | 1 cut(s) | 391 |
| NlaIII | CATG | 1 cut(s) | 508 |
| NlaIV | GGNNCC | 6 cut(s) | 182, 353, 436, 472, 550, 568 |
| OliI | CACNNNNGTG | 1 cut(s) | 339 |
| PdiI | GCCGGC | 1 cut(s) | 393 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 480, 673 |
| PleI | GAGTC | 5 cut(s) | 292, 385, 605, 616, 708 |
| PluTI | GGCGCC | 1 cut(s) | 474 |
| PpsI | GAGTC | 5 cut(s) | 292, 385, 605, 616, 708 |
| PpuMI | RGGWCCY | 1 cut(s) | 181 |
| Psp5II | RGGWCCY | 1 cut(s) | 181 |
| Psp6I | CCWGG | 4 cut(s) | 87, 183, 438, 672 |
| PspFI | CCCAGC | 2 cut(s) | 615, 650 |
| PspGI | CCWGG | 4 cut(s) | 87, 183, 438, 672 |
| PspN4I | GGNNCC | 6 cut(s) | 182, 353, 436, 472, 550, 568 |
| PspPI | GGNCC | 4 cut(s) | 85, 181, 548, 664 |
| PspPPI | RGGWCCY | 1 cut(s) | 181 |
| PstI | CTGCAG | 1 cut(s) | 462 |
| PstNI | CAGNNNCTG | 1 cut(s) | 755 |
| PsuI | RGATCY | 2 cut(s) | 270, 716 |
| RsaI | GTAC | 2 cut(s) | 383, 685 |
| RsaNI | GTAC | 2 cut(s) | 382, 684 |
| RseI | CAYNNNNRTG | 1 cut(s) | 339 |
| SacII | CCGCGG | 1 cut(s) | 715 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| Sau3AI | GATC | 4 cut(s) | 196, 238, 270, 716 |
| Sau96I | GGNCC | 4 cut(s) | 85, 181, 548, 664 |
| SchI | GAGTC | 5 cut(s) | 293, 386, 605, 616, 709 |
| ScrFI | CCNGG | 4 cut(s) | 89, 185, 440, 674 |
| SduI | GDGCHC | 2 cut(s) | 45, 439 |
| SfaNI | GCATC | 5 cut(s) | 23, 127, 136, 511, 757 |
| SfcI | CTRYAG | 1 cut(s) | 458 |
| SfoI | GGCGCC | 1 cut(s) | 472 |
| Sfr303I | CCGCGG | 1 cut(s) | 715 |
| SgrBI | CCGCGG | 1 cut(s) | 715 |
| SinI | GGWCC | 1 cut(s) | 181 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 339 |
| Sse9I | AATT | 2 cut(s) | 200, 209 |
| SspDI | GGCGCC | 1 cut(s) | 470 |
| StyD4I | CCNGG | 4 cut(s) | 87, 183, 438, 672 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaaI | ACNGT | 2 cut(s) | 134, 315 |
| TaqI | TCGA | 1 cut(s) | 17 |
| TaqII | GACCGA | 1 cut(s) | 431 |
| TasI | AATT | 2 cut(s) | 200, 209 |
| TauI | GCSGC | 8 cut(s) | 14, 156, 251, 293, 357, 371, 735, 748 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TscAI | CASTG | 1 cut(s) | 147 |
| TseI | GCWGC | 5 cut(s) | 388, 457, 460, 508, 533 |
| TspGWI | ACGGA | 1 cut(s) | 516 |
| TspRI | CASTG | 1 cut(s) | 147 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 480, 673 |
| VpaK11BI | GGWCC | 1 cut(s) | 181 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 122 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 157, 370 |