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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 246 |
| AccBSI | CCGCTC | 3 cut(s) | 196, 271, 349 |
| AccII | CGCG | 1 cut(s) | 467 |
| AciI | CCGC | 9 cut(s) | 18, 55, 196, 226, 239, 260, 271, 349, 407 |
| AcoI | YGGCCR | 2 cut(s) | 133, 408 |
| AcuI | CTGAAG | 1 cut(s) | 419 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 73, 456 |
| AgsI | TTSAA | 1 cut(s) | 177 |
| AjnI | CCWGG | 3 cut(s) | 5, 165, 449 |
| AleI | CACNNNNGTG | 1 cut(s) | 92 |
| AluBI | AGCT | 6 cut(s) | 123, 160, 214, 277, 319, 391 |
| AluI | AGCT | 6 cut(s) | 123, 160, 214, 277, 319, 391 |
| Alw21I | GWGCWC | 2 cut(s) | 162, 216 |
| Alw26I | GTCTC | 1 cut(s) | 92 |
| Ama87I | CYCGRG | 1 cut(s) | 30 |
| AoxI | GGCC | 5 cut(s) | 8, 126, 133, 249, 408 |
| ApeKI | GCWGC | 2 cut(s) | 181, 274 |
| AspLEI | GCGC | 2 cut(s) | 247, 467 |
| AsuC2I | CCSGG | 2 cut(s) | 31, 32 |
| AsuHPI | GGTGA | 1 cut(s) | 242 |
| AvaI | CYCGRG | 1 cut(s) | 30 |
| AxyI | CCTNAGG | 1 cut(s) | 186 |
| BalI | TGGCCA | 1 cut(s) | 135 |
| BanII | GRGCYC | 2 cut(s) | 162, 216 |
| BauI | CACGAG | 1 cut(s) | 155 |
| Bbv12I | GWGCWC | 2 cut(s) | 162, 216 |
| BbvI | GCAGC | 2 cut(s) | 193, 286 |
| BccI | CCATC | 4 cut(s) | 110, 144, 338, 397 |
| BceAI | ACGGC | 2 cut(s) | 68, 100 |
| BciT130I | CCWGG | 3 cut(s) | 7, 167, 451 |
| BcnI | CCSGG | 2 cut(s) | 31, 32 |
| BcoDI | GTCTC | 1 cut(s) | 92 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 257 |
| BisI | GCNGC | 7 cut(s) | 18, 56, 182, 197, 272, 275, 408 |
| BlsI | GCNGC | 7 cut(s) | 19, 57, 183, 198, 273, 276, 409 |
| Bme1390I | CCNGG | 5 cut(s) | 7, 31, 32, 167, 451 |
| BmeT110I | CYCGRG | 1 cut(s) | 30 |
| BmrFI | CCNGG | 5 cut(s) | 7, 31, 32, 167, 451 |
| BmsI | GCATC | 2 cut(s) | 232, 295 |
| BpmI | CTGGAG | 2 cut(s) | 188, 356 |
| Bpu10I | CCTNAGC | 1 cut(s) | 455 |
| BpuEI | CTTGAG | 1 cut(s) | 365 |
| BpuMI | CCSGG | 2 cut(s) | 31, 32 |
| BsaI | GGTCTC | 1 cut(s) | 92 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 300, 411 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 73, 456 |
| Bse1I | ACTGG | 2 cut(s) | 94, 261 |
| Bse21I | CCTNAGG | 1 cut(s) | 186 |
| Bse3DI | GCAATG | 1 cut(s) | 301 |
| BseBI | CCWGG | 3 cut(s) | 7, 167, 451 |
| BseDI | CCNNGG | 3 cut(s) | 30, 300, 411 |
| BseGI | GGATG | 2 cut(s) | 247, 310 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 73, 456 |
| BseMI | GCAATG | 1 cut(s) | 301 |
| BseMII | CTCAG | 2 cut(s) | 177, 459 |
| BseNI | ACTGG | 2 cut(s) | 94, 261 |
| BseRI | GAGGAG | 2 cut(s) | 89, 224 |
| BseXI | GCAGC | 2 cut(s) | 193, 286 |
| Bsh1236I | CGCG | 1 cut(s) | 467 |
| BshFI | GGCC | 5 cut(s) | 10, 128, 135, 251, 410 |
| BsiHKAI | GWGCWC | 2 cut(s) | 162, 216 |
| BsiHKCI | CYCGRG | 1 cut(s) | 30 |
| BsiSI | CCGG | 1 cut(s) | 31 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 73, 456 |
| BsmAI | GTCTC | 1 cut(s) | 92 |
| BsmI | GAATGC | 1 cut(s) | 296 |
| BsnI | GGCC | 5 cut(s) | 10, 128, 135, 251, 410 |
| Bso31I | GGTCTC | 1 cut(s) | 92 |
| BsoBI | CYCGRG | 1 cut(s) | 30 |
| Bsp1286I | GDGCHC | 2 cut(s) | 162, 216 |
| BspACI | CCGC | 9 cut(s) | 18, 55, 196, 226, 239, 260, 271, 349, 407 |
| BspANI | GGCC | 5 cut(s) | 10, 128, 135, 251, 410 |
| BspCNI | CTCAG | 2 cut(s) | 178, 458 |
| BspFNI | CGCG | 1 cut(s) | 467 |
| BspQI | GCTCTTC | 1 cut(s) | 167 |
| BspTNI | GGTCTC | 1 cut(s) | 92 |
| BsrBI | CCGCTC | 3 cut(s) | 196, 271, 349 |
| BsrDI | GCAATG | 1 cut(s) | 301 |
| BsrI | ACTGG | 2 cut(s) | 94, 261 |
| BssECI | CCNNGG | 3 cut(s) | 30, 300, 411 |
| BssSI | CACGAG | 1 cut(s) | 155 |
| BssT1I | CCWWGG | 1 cut(s) | 411 |
| Bst2BI | CACGAG | 1 cut(s) | 155 |
| Bst2UI | CCWGG | 3 cut(s) | 7, 167, 451 |
| Bst6I | CTCTTC | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 3 cut(s) | 22, 249, 317 |
| BstDEI | CTNAG | 3 cut(s) | 186, 445, 455 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 71, 454 |
| BstF5I | GGATG | 2 cut(s) | 247, 310 |
| BstFNI | CGCG | 1 cut(s) | 467 |
| BstHHI | GCGC | 2 cut(s) | 247, 467 |
| BstMAI | GTCTC | 1 cut(s) | 92 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 257, 305, 397 |
| BstNI | CCWGG | 3 cut(s) | 7, 167, 451 |
| BstNSI | RCATGY | 1 cut(s) | 370 |
| BstSCI | CCNGG | 5 cut(s) | 5, 29, 30, 165, 449 |
| BstUI | CGCG | 1 cut(s) | 467 |
| BstV1I | GCAGC | 2 cut(s) | 193, 286 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 94 |
| Bsu36I | CCTNAGG | 1 cut(s) | 186 |
| BsuRI | GGCC | 5 cut(s) | 10, 128, 135, 251, 410 |
| BtsCI | GGATG | 2 cut(s) | 247, 310 |
| BtsIMutI | CAGTG | 1 cut(s) | 87 |
| Cac8I | GCNNGC | 3 cut(s) | 22, 249, 317 |
| CfoI | GCGC | 2 cut(s) | 247, 467 |
| Cfr9I | CCCGGG | 1 cut(s) | 30 |
| CviAII | CATG | 1 cut(s) | 367 |
| DdeI | CTNAG | 3 cut(s) | 186, 445, 455 |
| EaeI | YGGCCR | 2 cut(s) | 133, 408 |
| Eam1104I | CTCTTC | 1 cut(s) | 167 |
| EarI | CTCTTC | 1 cut(s) | 167 |
| EciI | GGCGGA | 2 cut(s) | 254, 275 |
| Ecl136II | GAGCTC | 2 cut(s) | 160, 214 |
| Eco130I | CCWWGG | 1 cut(s) | 411 |
| Eco147I | AGGCCT | 1 cut(s) | 10 |
| Eco24I | GRGCYC | 2 cut(s) | 162, 216 |
| Eco31I | GGTCTC | 1 cut(s) | 92 |
| Eco53kI | GAGCTC | 2 cut(s) | 160, 214 |
| Eco57I | CTGAAG | 1 cut(s) | 419 |
| Eco81I | CCTNAGG | 1 cut(s) | 186 |
| Eco88I | CYCGRG | 1 cut(s) | 30 |
| EcoICRI | GAGCTC | 2 cut(s) | 160, 214 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 71, 454 |
| EcoRII | CCWGG | 3 cut(s) | 5, 165, 449 |
| EcoT14I | CCWWGG | 1 cut(s) | 411 |
| EcoT38I | GRGCYC | 2 cut(s) | 162, 216 |
| ErhI | CCWWGG | 1 cut(s) | 411 |
| FaeI | CATG | 1 cut(s) | 370 |
| FaiI | YATR | 2 cut(s) | 368, 383 |
| FatI | CATG | 1 cut(s) | 366 |
| FauI | CCCGC | 1 cut(s) | 219 |
| Fnu4HI | GCNGC | 7 cut(s) | 18, 56, 182, 197, 272, 275, 408 |
| FokI | GGATG | 2 cut(s) | 254, 317 |
| FriOI | GRGCYC | 2 cut(s) | 162, 216 |
| Fsp4HI | GCNGC | 7 cut(s) | 18, 56, 182, 197, 272, 275, 408 |
| FspI | TGCGCA | 1 cut(s) | 246 |
| GlaI | GCGC | 2 cut(s) | 246, 466 |
| GluI | GCNGC | 7 cut(s) | 18, 56, 182, 197, 272, 275, 408 |
| GsuI | CTGGAG | 2 cut(s) | 188, 356 |
| HaeIII | GGCC | 5 cut(s) | 10, 128, 135, 251, 410 |
| HapII | CCGG | 1 cut(s) | 31 |
| HhaI | GCGC | 2 cut(s) | 247, 467 |
| Hin1II | CATG | 1 cut(s) | 370 |
| Hin6I | GCGC | 2 cut(s) | 245, 465 |
| HinP1I | GCGC | 2 cut(s) | 245, 465 |
| HinfI | GANTC | 1 cut(s) | 443 |
| HpaII | CCGG | 1 cut(s) | 31 |
| HphI | GGTGA | 1 cut(s) | 242 |
| Hpy188I | TCNGA | 2 cut(s) | 304, 438 |
| HpyAV | CCTTC | 1 cut(s) | 277 |
| HpyCH4V | TGCA | 2 cut(s) | 154, 294 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 257, 305, 397 |
| HpyF3I | CTNAG | 3 cut(s) | 186, 445, 455 |
| Hsp92II | CATG | 1 cut(s) | 370 |
| HspAI | GCGC | 2 cut(s) | 245, 465 |
| LguI | GCTCTTC | 1 cut(s) | 167 |
| LmnI | GCTCC | 3 cut(s) | 211, 268, 375 |
| Lsp1109I | GCAGC | 2 cut(s) | 193, 286 |
| LweI | GCATC | 2 cut(s) | 232, 295 |
| MbiI | CCGCTC | 3 cut(s) | 196, 271, 349 |
| MboII | GAAGA | 2 cut(s) | 154, 425 |
| MhlI | GDGCHC | 2 cut(s) | 162, 216 |
| MlsI | TGGCCA | 1 cut(s) | 135 |
| MluCI | AATT | 1 cut(s) | 233 |
| MluNI | TGGCCA | 1 cut(s) | 135 |
| MlyI | GAGTC | 1 cut(s) | 437 |
| MnlI | CCTC | 8 cut(s) | 39, 67, 77, 181, 202, 280, 310, 414 |
| Mox20I | TGGCCA | 1 cut(s) | 135 |
| MscI | TGGCCA | 1 cut(s) | 135 |
| MseI | TTAA | 1 cut(s) | 417 |
| MslI | CAYNNNNRTG | 2 cut(s) | 92, 365 |
| Msp20I | TGGCCA | 1 cut(s) | 135 |
| MspA1I | CMGCKG | 3 cut(s) | 20, 277, 391 |
| MspI | CCGG | 1 cut(s) | 31 |
| MspR9I | CCNGG | 5 cut(s) | 7, 31, 32, 167, 451 |
| Mva1269I | GAATGC | 1 cut(s) | 296 |
| MvaI | CCWGG | 3 cut(s) | 7, 167, 451 |
| MvnI | CGCG | 1 cut(s) | 467 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 257, 305, 397 |
| NciI | CCSGG | 2 cut(s) | 31, 32 |
| NlaIII | CATG | 1 cut(s) | 370 |
| NmeAIII | GCCGAG | 1 cut(s) | 104 |
| NsbI | TGCGCA | 1 cut(s) | 246 |
| NspI | RCATGY | 1 cut(s) | 370 |
| OliI | CACNNNNGTG | 1 cut(s) | 92 |
| PceI | AGGCCT | 1 cut(s) | 10 |
| PciSI | GCTCTTC | 1 cut(s) | 167 |
| PctI | GAATGC | 1 cut(s) | 296 |
| PfoI | TCCNGGA | 1 cut(s) | 165 |
| PkrI | GCNGC | 7 cut(s) | 19, 57, 183, 198, 273, 276, 409 |
| PleI | GAGTC | 1 cut(s) | 437 |
| PpsI | GAGTC | 1 cut(s) | 437 |
| Psp124BI | GAGCTC | 2 cut(s) | 162, 216 |
| Psp6I | CCWGG | 3 cut(s) | 5, 165, 449 |
| PspGI | CCWGG | 3 cut(s) | 5, 165, 449 |
| PvuII | CAGCTG | 2 cut(s) | 277, 391 |
| RseI | CAYNNNNRTG | 2 cut(s) | 92, 365 |
| SacI | GAGCTC | 2 cut(s) | 162, 216 |
| SapI | GCTCTTC | 1 cut(s) | 167 |
| SaqAI | TTAA | 1 cut(s) | 417 |
| SatI | GCNGC | 7 cut(s) | 18, 56, 182, 197, 272, 275, 408 |
| SchI | GAGTC | 1 cut(s) | 437 |
| ScrFI | CCNGG | 5 cut(s) | 7, 31, 32, 167, 451 |
| SduI | GDGCHC | 2 cut(s) | 162, 216 |
| SfaNI | GCATC | 2 cut(s) | 232, 295 |
| SmaI | CCCGGG | 1 cut(s) | 32 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 92, 365 |
| SmlI | CTYRAG | 1 cut(s) | 344 |
| SmoI | CTYRAG | 1 cut(s) | 344 |
| Sse9I | AATT | 1 cut(s) | 233 |
| SseBI | AGGCCT | 1 cut(s) | 10 |
| SsiI | CCGC | 9 cut(s) | 18, 55, 196, 226, 239, 260, 271, 349, 407 |
| SstI | GAGCTC | 2 cut(s) | 162, 216 |
| StuI | AGGCCT | 1 cut(s) | 10 |
| StyD4I | CCNGG | 5 cut(s) | 5, 29, 30, 165, 449 |
| StyI | CCWWGG | 1 cut(s) | 411 |
| TaqI | TCGA | 2 cut(s) | 69, 216 |
| TasI | AATT | 1 cut(s) | 233 |
| TauI | GCSGC | 5 cut(s) | 20, 58, 199, 274, 410 |
| Tru1I | TTAA | 1 cut(s) | 417 |
| Tru9I | TTAA | 1 cut(s) | 417 |
| TscAI | CASTG | 1 cut(s) | 94 |
| TseI | GCWGC | 2 cut(s) | 181, 274 |
| TspDTI | ATGAA | 1 cut(s) | 96 |
| TspMI | CCCGGG | 1 cut(s) | 30 |
| TspRI | CASTG | 1 cut(s) | 94 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 71, 454 |
| XceI | RCATGY | 1 cut(s) | 370 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 143 |
| XmaI | CCCGGG | 1 cut(s) | 30 |