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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 123 |
| AccBSI | CCGCTC | 4 cut(s) | 186, 213, 426, 555 |
| AccII | CGCG | 3 cut(s) | 246, 467, 541 |
| AclWI | GGATC | 1 cut(s) | 503 |
| AcoI | YGGCCR | 1 cut(s) | 482 |
| AcuI | CTGAAG | 1 cut(s) | 258 |
| AcyI | GRCGYC | 3 cut(s) | 124, 328, 461 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 50, 348, 491 |
| AflIII | ACRYGT | 1 cut(s) | 513 |
| AjiI | CACGTC | 1 cut(s) | 516 |
| AjnI | CCWGG | 1 cut(s) | 49 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 175, 207 |
| AluBI | AGCT | 4 cut(s) | 278, 357, 474, 579 |
| AluI | AGCT | 4 cut(s) | 278, 357, 474, 579 |
| Alw21I | GWGCWC | 1 cut(s) | 359 |
| Alw26I | GTCTC | 4 cut(s) | 28, 382, 402, 522 |
| AlwI | GGATC | 1 cut(s) | 503 |
| AoxI | GGCC | 3 cut(s) | 80, 398, 482 |
| ApeKI | GCWGC | 6 cut(s) | 24, 336, 543, 546, 591, 604 |
| AspLEI | GCGC | 4 cut(s) | 126, 165, 248, 543 |
| AspS9I | GGNCC | 2 cut(s) | 4, 81 |
| AsuC2I | CCSGG | 1 cut(s) | 342 |
| AsuHPI | GGTGA | 2 cut(s) | 67, 649 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BaeGI | GKGCMC | 1 cut(s) | 432 |
| BanI | GGYRCC | 1 cut(s) | 123 |
| BanII | GRGCYC | 1 cut(s) | 359 |
| BbsI | GAAGAC | 1 cut(s) | 22 |
| Bbv12I | GWGCWC | 1 cut(s) | 359 |
| BbvI | GCAGC | 6 cut(s) | 36, 348, 530, 533, 591, 603 |
| BccI | CCATC | 2 cut(s) | 209, 493 |
| BceAI | ACGGC | 2 cut(s) | 115, 269 |
| BciT130I | CCWGG | 1 cut(s) | 51 |
| BcnI | CCSGG | 1 cut(s) | 342 |
| BcoDI | GTCTC | 4 cut(s) | 28, 382, 402, 522 |
| BfoI | RGCGCY | 1 cut(s) | 127 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 69 |
| Bme1390I | CCNGG | 2 cut(s) | 51, 342 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgBI | CACGTC | 1 cut(s) | 516 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 81 |
| BmiI | GGNNCC | 1 cut(s) | 125 |
| BmrFI | CCNGG | 2 cut(s) | 51, 342 |
| BpiI | GAAGAC | 1 cut(s) | 22 |
| BpmI | CTGGAG | 2 cut(s) | 364, 520 |
| Bpu10I | CCTNAGC | 1 cut(s) | 358 |
| BpuMI | CCSGG | 1 cut(s) | 342 |
| BsaHI | GRCGYC | 3 cut(s) | 124, 328, 461 |
| BsaI | GGTCTC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 4 cut(s) | 50, 340, 401, 465 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 175, 205 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 50, 348, 491 |
| Bse118I | RCCGGY | 1 cut(s) | 63 |
| Bse1I | ACTGG | 3 cut(s) | 416, 437, 617 |
| BseBI | CCWGG | 1 cut(s) | 51 |
| BseDI | CCNNGG | 4 cut(s) | 50, 340, 401, 465 |
| BseGI | GGATG | 2 cut(s) | 485, 621 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 50, 348, 491 |
| BseMII | CTCAG | 1 cut(s) | 372 |
| BseNI | ACTGG | 3 cut(s) | 416, 437, 617 |
| BseSI | GKGCMC | 1 cut(s) | 432 |
| BseXI | GCAGC | 6 cut(s) | 36, 348, 530, 533, 591, 603 |
| BseYI | CCCAGC | 1 cut(s) | 216 |
| BsgI | GTGCAG | 2 cut(s) | 43, 610 |
| Bsh1236I | CGCG | 3 cut(s) | 246, 467, 541 |
| Bsh1285I | CGRYCG | 1 cut(s) | 680 |
| BshFI | GGCC | 3 cut(s) | 82, 400, 484 |
| BshNI | GGYRCC | 1 cut(s) | 123 |
| BsiEI | CGRYCG | 1 cut(s) | 680 |
| BsiHKAI | GWGCWC | 1 cut(s) | 359 |
| BsiSI | CCGG | 3 cut(s) | 64, 342, 489 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 50, 348, 491 |
| BsmAI | GTCTC | 4 cut(s) | 28, 382, 402, 522 |
| BsmBI | CGTCTC | 1 cut(s) | 522 |
| BsnI | GGCC | 3 cut(s) | 82, 400, 484 |
| Bso31I | GGTCTC | 1 cut(s) | 382 |
| Bsp1286I | GDGCHC | 2 cut(s) | 359, 432 |
| Bsp143I | GATC | 3 cut(s) | 138, 495, 536 |
| BspANI | GGCC | 3 cut(s) | 82, 400, 484 |
| BspCNI | CTCAG | 1 cut(s) | 371 |
| BspFNI | CGCG | 3 cut(s) | 246, 467, 541 |
| BspHI | TCATGA | 1 cut(s) | 170 |
| BspLI | GGNNCC | 1 cut(s) | 125 |
| BspPI | GGATC | 1 cut(s) | 503 |
| BspQI | GCTCTTC | 1 cut(s) | 347 |
| BspT107I | GGYRCC | 1 cut(s) | 123 |
| BspTNI | GGTCTC | 1 cut(s) | 382 |
| BsrBI | CCGCTC | 4 cut(s) | 186, 213, 426, 555 |
| BsrFI | RCCGGY | 1 cut(s) | 63 |
| BsrI | ACTGG | 3 cut(s) | 416, 437, 617 |
| BssAI | RCCGGY | 1 cut(s) | 63 |
| BssECI | CCNNGG | 4 cut(s) | 50, 340, 401, 465 |
| BssMI | GATC | 3 cut(s) | 138, 495, 536 |
| BssNI | GRCGYC | 3 cut(s) | 124, 328, 461 |
| BssT1I | CCWWGG | 1 cut(s) | 401 |
| Bst2BI | CACGAG | 2 cut(s) | 685, 1804 |
| Bst2UI | CCWGG | 1 cut(s) | 51 |
| Bst4CI | ACNGT | 2 cut(s) | 21, 637 |
| Bst6I | CTCTTC | 1 cut(s) | 347 |
| BstACI | GRCGYC | 3 cut(s) | 124, 328, 461 |
| BstC8I | GCNNGC | 6 cut(s) | 128, 211, 237, 428, 465, 472 |
| BstDEI | CTNAG | 2 cut(s) | 332, 358 |
| BstDSI | CCRYGG | 1 cut(s) | 465 |
| BstF5I | GGATG | 2 cut(s) | 485, 621 |
| BstFNI | CGCG | 3 cut(s) | 246, 467, 541 |
| BstH2I | RGCGCY | 1 cut(s) | 127 |
| BstHHI | GCGC | 4 cut(s) | 126, 165, 248, 543 |
| BstKTI | GATC | 3 cut(s) | 141, 498, 539 |
| BstMAI | GTCTC | 4 cut(s) | 28, 382, 402, 522 |
| BstMBI | GATC | 3 cut(s) | 138, 495, 536 |
| BstMCI | CGRYCG | 1 cut(s) | 680 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 66, 69, 160, 245, 552, 682 |
| BstNI | CCWGG | 1 cut(s) | 51 |
| BstSCI | CCNGG | 2 cut(s) | 49, 340 |
| BstSLI | GKGCMC | 1 cut(s) | 432 |
| BstUI | CGCG | 3 cut(s) | 246, 467, 541 |
| BstV1I | GCAGC | 6 cut(s) | 36, 348, 530, 533, 591, 603 |
| BstV2I | GAAGAC | 1 cut(s) | 22 |
| BstX2I | RGATCY | 1 cut(s) | 495 |
| BstYI | RGATCY | 1 cut(s) | 495 |
| BsuRI | GGCC | 3 cut(s) | 82, 400, 484 |
| BtgI | CCRYGG | 1 cut(s) | 465 |
| BtrI | CACGTC | 1 cut(s) | 516 |
| BtsCI | GGATG | 2 cut(s) | 485, 621 |
| BtsI | GCAGTG | 1 cut(s) | 113 |
| BtsIMutI | CAGTG | 3 cut(s) | 113, 141, 430 |
| Cac8I | GCNNGC | 6 cut(s) | 128, 211, 237, 428, 465, 472 |
| CciI | TCATGA | 1 cut(s) | 170 |
| CfoI | GCGC | 4 cut(s) | 126, 165, 248, 543 |
| Cfr10I | RCCGGY | 1 cut(s) | 63 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 81 |
| Cfr42I | CCGCGG | 1 cut(s) | 468 |
| CseI | GACGC | 3 cut(s) | 83, 317, 469 |
| CviAII | CATG | 2 cut(s) | 171, 550 |
| DdeI | CTNAG | 2 cut(s) | 332, 358 |
| DinI | GGCGCC | 1 cut(s) | 125 |
| DpnI | GATC | 3 cut(s) | 140, 497, 538 |
| DpnII | GATC | 3 cut(s) | 138, 495, 536 |
| EaeI | YGGCCR | 1 cut(s) | 482 |
| Eam1104I | CTCTTC | 1 cut(s) | 347 |
| EarI | CTCTTC | 1 cut(s) | 347 |
| EciI | GGCGGA | 4 cut(s) | 127, 409, 430, 457 |
| Ecl136II | GAGCTC | 1 cut(s) | 357 |
| Eco130I | CCWWGG | 1 cut(s) | 401 |
| Eco24I | GRGCYC | 1 cut(s) | 359 |
| Eco31I | GGTCTC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco53kI | GAGCTC | 1 cut(s) | 357 |
| Eco57I | CTGAAG | 1 cut(s) | 258 |
| EcoICRI | GAGCTC | 1 cut(s) | 357 |
| EcoRII | CCWGG | 1 cut(s) | 49 |
| EcoT14I | CCWWGG | 1 cut(s) | 401 |
| EcoT38I | GRGCYC | 1 cut(s) | 359 |
| EgeI | GGCGCC | 1 cut(s) | 125 |
| EheI | GGCGCC | 1 cut(s) | 125 |
| ErhI | CCWWGG | 1 cut(s) | 401 |
| Esp3I | CGTCTC | 1 cut(s) | 522 |
| FaeI | CATG | 2 cut(s) | 174, 553 |
| FaiI | YATR | 6 cut(s) | 161, 172, 241, 316, 455, 551 |
| FatI | CATG | 2 cut(s) | 170, 549 |
| FauI | CCCGC | 8 cut(s) | 135, 179, 228, 294, 419, 472, 485, 587 |
| FokI | GGATG | 2 cut(s) | 472, 628 |
| FriOI | GRGCYC | 1 cut(s) | 359 |
| GlaI | GCGC | 4 cut(s) | 125, 164, 247, 542 |
| GsaI | CCCAGC | 1 cut(s) | 220 |
| GsuI | CTGGAG | 2 cut(s) | 364, 520 |
| HaeII | RGCGCY | 1 cut(s) | 127 |
| HaeIII | GGCC | 3 cut(s) | 82, 400, 484 |
| HapII | CCGG | 3 cut(s) | 64, 342, 489 |
| HgaI | GACGC | 3 cut(s) | 83, 317, 469 |
| HhaI | GCGC | 4 cut(s) | 126, 165, 248, 543 |
| Hin1I | GRCGYC | 3 cut(s) | 124, 328, 461 |
| Hin1II | CATG | 2 cut(s) | 174, 553 |
| Hin6I | GCGC | 4 cut(s) | 124, 163, 246, 541 |
| HinP1I | GCGC | 4 cut(s) | 124, 163, 246, 541 |
| HincII | GTYRAC | 1 cut(s) | 645 |
| HindII | GTYRAC | 1 cut(s) | 645 |
| HindIII | AAGCTT | 1 cut(s) | 472 |
| HinfI | GANTC | 3 cut(s) | 46, 145, 598 |
| HpaII | CCGG | 3 cut(s) | 64, 342, 489 |
| HphI | GGTGA | 2 cut(s) | 67, 649 |
| Hpy166II | GTNNAC | 1 cut(s) | 645 |
| Hpy188I | TCNGA | 1 cut(s) | 373 |
| Hpy188III | TCNNGA | 4 cut(s) | 142, 171, 381, 499 |
| Hpy8I | GTNNAC | 1 cut(s) | 645 |
| Hpy99I | CGWCG | 3 cut(s) | 33, 99, 255 |
| HpyAV | CCTTC | 5 cut(s) | 72, 93, 159, 172, 282 |
| HpyCH4III | ACNGT | 2 cut(s) | 21, 637 |
| HpyCH4IV | ACGT | 1 cut(s) | 515 |
| HpyCH4V | TGCA | 4 cut(s) | 24, 106, 549, 591 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 66, 69, 160, 245, 552, 682 |
| HpyF3I | CTNAG | 2 cut(s) | 332, 358 |
| HpySE526I | ACGT | 1 cut(s) | 515 |
| Hsp92I | GRCGYC | 3 cut(s) | 124, 328, 461 |
| Hsp92II | CATG | 2 cut(s) | 174, 553 |
| HspAI | GCGC | 4 cut(s) | 124, 163, 246, 541 |
| KasI | GGCGCC | 1 cut(s) | 123 |
| KspI | CCGCGG | 1 cut(s) | 468 |
| Kzo9I | GATC | 3 cut(s) | 138, 495, 536 |
| LguI | GCTCTTC | 1 cut(s) | 347 |
| LmnI | GCTCC | 2 cut(s) | 183, 528 |
| Lsp1109I | GCAGC | 6 cut(s) | 36, 348, 530, 533, 591, 603 |
| MaeII | ACGT | 1 cut(s) | 515 |
| MaeIII | GTNAC | 1 cut(s) | 305 |
| MalI | GATC | 3 cut(s) | 140, 497, 538 |
| MbiI | CCGCTC | 4 cut(s) | 186, 213, 426, 555 |
| MboI | GATC | 3 cut(s) | 138, 495, 536 |
| MboII | GAAGA | 2 cut(s) | 27, 364 |
| MfeI | CAATTG | 1 cut(s) | 257 |
| MflI | RGATCY | 1 cut(s) | 495 |
| MhlI | GDGCHC | 2 cut(s) | 359, 432 |
| MluCI | AATT | 1 cut(s) | 257 |
| Mly113I | GGCGCC | 1 cut(s) | 124 |
| MlyI | GAGTC | 3 cut(s) | 55, 139, 607 |
| MmeI | TCCRAC | 1 cut(s) | 506 |
| MseI | TTAA | 1 cut(s) | 476 |
| MslI | CAYNNNNRTG | 1 cut(s) | 586 |
| MspA1I | CMGCKG | 2 cut(s) | 467, 594 |
| MspI | CCGG | 3 cut(s) | 64, 342, 489 |
| MspR9I | CCNGG | 2 cut(s) | 51, 342 |
| MunI | CAATTG | 1 cut(s) | 257 |
| MvaI | CCWGG | 1 cut(s) | 51 |
| MvnI | CGCG | 3 cut(s) | 246, 467, 541 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 66, 69, 160, 245, 552, 682 |
| NarI | GGCGCC | 1 cut(s) | 124 |
| NciI | CCSGG | 1 cut(s) | 342 |
| NdeII | GATC | 3 cut(s) | 138, 495, 536 |
| NlaIII | CATG | 2 cut(s) | 174, 553 |
| NlaIV | GGNNCC | 1 cut(s) | 125 |
| NmeAIII | GCCGAG | 2 cut(s) | 180, 259 |
| PagI | TCATGA | 1 cut(s) | 170 |
| PciSI | GCTCTTC | 1 cut(s) | 347 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 25, 317 |
| PleI | GAGTC | 3 cut(s) | 54, 139, 606 |
| PluTI | GGCGCC | 1 cut(s) | 127 |
| PpsI | GAGTC | 3 cut(s) | 54, 139, 606 |
| Psp124BI | GAGCTC | 1 cut(s) | 359 |
| Psp6I | CCWGG | 1 cut(s) | 49 |
| PspFI | CCCAGC | 1 cut(s) | 216 |
| PspGI | CCWGG | 1 cut(s) | 49 |
| PspN4I | GGNNCC | 1 cut(s) | 125 |
| PspPI | GGNCC | 2 cut(s) | 4, 81 |
| PsuI | RGATCY | 1 cut(s) | 495 |
| RseI | CAYNNNNRTG | 1 cut(s) | 586 |
| SacI | GAGCTC | 1 cut(s) | 359 |
| SacII | CCGCGG | 1 cut(s) | 468 |
| SapI | GCTCTTC | 1 cut(s) | 347 |
| SaqAI | TTAA | 1 cut(s) | 476 |
| Sau3AI | GATC | 3 cut(s) | 138, 495, 536 |
| Sau96I | GGNCC | 2 cut(s) | 4, 81 |
| SchI | GAGTC | 3 cut(s) | 55, 139, 607 |
| ScrFI | CCNGG | 2 cut(s) | 51, 342 |
| SduI | GDGCHC | 2 cut(s) | 359, 432 |
| SetI | ASST | 9 cut(s) | 104, 280, 359, 378, 422, 476, 518, 581, 644 |
| SfoI | GGCGCC | 1 cut(s) | 125 |
| Sfr303I | CCGCGG | 1 cut(s) | 468 |
| SgrAI | CRCCGGYG | 1 cut(s) | 63 |
| SgrBI | CCGCGG | 1 cut(s) | 468 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 586 |
| Sse9I | AATT | 1 cut(s) | 257 |
| SspDI | GGCGCC | 1 cut(s) | 123 |
| SstI | GAGCTC | 1 cut(s) | 359 |
| StyD4I | CCNGG | 2 cut(s) | 49, 340 |
| StyI | CCWWGG | 1 cut(s) | 401 |
| TaaI | ACNGT | 2 cut(s) | 21, 637 |
| TaiI | ACGT | 1 cut(s) | 518 |
| TaqI | TCGA | 2 cut(s) | 97, 422 |
| TasI | AATT | 1 cut(s) | 257 |
| TauI | GCSGC | 9 cut(s) | 63, 72, 216, 328, 470, 484, 565, 630, 685 |
| Tru1I | TTAA | 1 cut(s) | 476 |
| Tru9I | TTAA | 1 cut(s) | 476 |
| TscAI | CASTG | 3 cut(s) | 113, 141, 437 |
| TseI | GCWGC | 6 cut(s) | 24, 336, 543, 546, 591, 604 |
| TspDTI | ATGAA | 3 cut(s) | 159, 524, 637 |
| TspGWI | ACGGA | 1 cut(s) | 46 |
| TspRI | CASTG | 3 cut(s) | 113, 141, 437 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 408 |