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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 451 |
| AccBSI | CCGCTC | 5 cut(s) | 202, 514, 541, 754, 883 |
| AccII | CGCG | 2 cut(s) | 574, 843 |
| AclWI | GGATC | 1 cut(s) | 171 |
| AcoI | YGGCCR | 3 cut(s) | 153, 810, 943 |
| AcuI | CTGAAG | 1 cut(s) | 586 |
| AcyI | GRCGYC | 2 cut(s) | 656, 789 |
| AfeI | AGCGCT | 1 cut(s) | 178 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 31, 70, 306, 676, 819 |
| AflIII | ACRYGT | 1 cut(s) | 841 |
| AgsI | TTSAA | 2 cut(s) | 242, 426 |
| AleI | CACNNNNGTG | 1 cut(s) | 219 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 503, 535 |
| AluBI | AGCT | 4 cut(s) | 469, 606, 685, 802 |
| AluI | AGCT | 4 cut(s) | 469, 606, 685, 802 |
| Alw21I | GWGCWC | 2 cut(s) | 229, 687 |
| Alw26I | GTCTC | 6 cut(s) | 41, 108, 354, 363, 710, 850 |
| AlwI | GGATC | 1 cut(s) | 171 |
| Ama87I | CYCGRG | 1 cut(s) | 44 |
| Aor51HI | AGCGCT | 1 cut(s) | 178 |
| AoxI | GGCC | 8 cut(s) | 21, 153, 188, 390, 408, 609, 810, 943 |
| ApaI | GGGCCC | 1 cut(s) | 394 |
| ApeKI | GCWGC | 3 cut(s) | 179, 664, 874 |
| AspLEI | GCGC | 5 cut(s) | 58, 179, 322, 336, 576 |
| AspS9I | GGNCC | 7 cut(s) | 22, 144, 188, 297, 390, 391, 409 |
| AsuC2I | CCSGG | 2 cut(s) | 338, 670 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 94 |
| AvaI | CYCGRG | 1 cut(s) | 44 |
| AvaII | GGWCC | 2 cut(s) | 144, 297 |
| BaeGI | GKGCMC | 1 cut(s) | 394 |
| BanI | GGYRCC | 1 cut(s) | 451 |
| BanII | GRGCYC | 2 cut(s) | 394, 687 |
| Bbv12I | GWGCWC | 2 cut(s) | 229, 687 |
| BbvI | GCAGC | 3 cut(s) | 166, 676, 861 |
| BccI | CCATC | 4 cut(s) | 113, 537, 821, 935 |
| BceAI | ACGGC | 4 cut(s) | 168, 381, 443, 597 |
| BcnI | CCSGG | 2 cut(s) | 338, 670 |
| BcoDI | GTCTC | 6 cut(s) | 41, 108, 354, 363, 710, 850 |
| BfaI | CTAG | 1 cut(s) | 323 |
| BfmI | CTRYAG | 2 cut(s) | 129, 875 |
| BfoI | RGCGCY | 4 cut(s) | 59, 180, 323, 337 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 416 |
| BlpI | GCTNAGC | 1 cut(s) | 59 |
| Bme1390I | CCNGG | 2 cut(s) | 338, 670 |
| Bme18I | GGWCC | 2 cut(s) | 144, 297 |
| BmeT110I | CYCGRG | 1 cut(s) | 44 |
| BmgT120I | GGNCC | 7 cut(s) | 22, 144, 188, 297, 390, 391, 409 |
| BmiI | GGNNCC | 9 cut(s) | 75, 145, 146, 276, 311, 391, 392, 420, 453 |
| BmrFI | CCNGG | 2 cut(s) | 338, 670 |
| BmsI | GCATC | 2 cut(s) | 75, 195 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 458, 490 |
| BpmI | CTGGAG | 1 cut(s) | 692 |
| Bpu10I | CCTNAGC | 1 cut(s) | 686 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 59 |
| BpuMI | CCSGG | 2 cut(s) | 338, 670 |
| BsaHI | GRCGYC | 2 cut(s) | 656, 789 |
| BsaI | GGTCTC | 1 cut(s) | 710 |
| BsaJI | CCNNGG | 3 cut(s) | 9, 69, 668 |
| BsaWI | WCCGGW | 1 cut(s) | 76 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 360, 390, 503, 533 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 31, 70, 306, 676, 819 |
| Bse118I | RCCGGY | 2 cut(s) | 155, 244 |
| Bse1I | ACTGG | 4 cut(s) | 64, 100, 281, 744 |
| BseDI | CCNNGG | 3 cut(s) | 9, 69, 668 |
| BseGI | GGATG | 3 cut(s) | 124, 210, 946 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 31, 70, 306, 676, 819 |
| BseMII | CTCAG | 3 cut(s) | 50, 336, 700 |
| BseNI | ACTGG | 4 cut(s) | 64, 100, 281, 744 |
| BseSI | GKGCMC | 1 cut(s) | 394 |
| BseX3I | CGGCCG | 1 cut(s) | 153 |
| BseXI | GCAGC | 3 cut(s) | 166, 676, 861 |
| BseYI | CCCAGC | 4 cut(s) | 24, 185, 305, 544 |
| BsgI | GTGCAG | 1 cut(s) | 155 |
| Bsh1236I | CGCG | 2 cut(s) | 574, 843 |
| Bsh1285I | CGRYCG | 1 cut(s) | 156 |
| BshFI | GGCC | 8 cut(s) | 23, 155, 190, 392, 410, 611, 812, 945 |
| BshNI | GGYRCC | 1 cut(s) | 451 |
| BsiEI | CGRYCG | 1 cut(s) | 156 |
| BsiHKAI | GWGCWC | 2 cut(s) | 229, 687 |
| BsiHKCI | CYCGRG | 1 cut(s) | 44 |
| BsiSI | CCGG | 5 cut(s) | 77, 156, 245, 337, 670 |
| BslFI | GGGAC | 2 cut(s) | 157, 836 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 31, 70, 306, 676, 819 |
| BsmAI | GTCTC | 6 cut(s) | 41, 108, 354, 363, 710, 850 |
| BsmBI | CGTCTC | 3 cut(s) | 41, 363, 850 |
| BsmFI | GGGAC | 2 cut(s) | 157, 836 |
| BsnI | GGCC | 8 cut(s) | 23, 155, 190, 392, 410, 611, 812, 945 |
| Bso31I | GGTCTC | 1 cut(s) | 710 |
| BsoBI | CYCGRG | 1 cut(s) | 44 |
| Bsp120I | GGGCCC | 1 cut(s) | 390 |
| Bsp1286I | GDGCHC | 3 cut(s) | 229, 394, 687 |
| Bsp143I | GATC | 2 cut(s) | 163, 864 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 59 |
| BspANI | GGCC | 8 cut(s) | 23, 155, 190, 392, 410, 611, 812, 945 |
| BspCNI | CTCAG | 3 cut(s) | 51, 337, 699 |
| BspFNI | CGCG | 2 cut(s) | 574, 843 |
| BspLI | GGNNCC | 9 cut(s) | 75, 145, 146, 276, 311, 391, 392, 420, 453 |
| BspMAI | CTGCAG | 1 cut(s) | 879 |
| BspPI | GGATC | 1 cut(s) | 171 |
| BspT107I | GGYRCC | 1 cut(s) | 451 |
| BspTNI | GGTCTC | 1 cut(s) | 710 |
| BsrBI | CCGCTC | 5 cut(s) | 202, 514, 541, 754, 883 |
| BsrFI | RCCGGY | 2 cut(s) | 155, 244 |
| BsrI | ACTGG | 4 cut(s) | 64, 100, 281, 744 |
| BssAI | RCCGGY | 2 cut(s) | 155, 244 |
| BssECI | CCNNGG | 3 cut(s) | 9, 69, 668 |
| BssMI | GATC | 2 cut(s) | 163, 864 |
| BssNI | GRCGYC | 2 cut(s) | 656, 789 |
| Bst4CI | ACNGT | 2 cut(s) | 34, 495 |
| Bst6I | CTCTTC | 2 cut(s) | 357, 530 |
| BstACI | GRCGYC | 2 cut(s) | 656, 789 |
| BstC8I | GCNNGC | 8 cut(s) | 18, 138, 157, 210, 394, 539, 565, 793 |
| BstDEI | CTNAG | 3 cut(s) | 59, 345, 686 |
| BstF5I | GGATG | 3 cut(s) | 124, 210, 946 |
| BstFNI | CGCG | 2 cut(s) | 574, 843 |
| BstH2I | RGCGCY | 4 cut(s) | 59, 180, 323, 337 |
| BstHHI | GCGC | 5 cut(s) | 58, 179, 322, 336, 576 |
| BstKTI | GATC | 2 cut(s) | 166, 867 |
| BstMAI | GTCTC | 6 cut(s) | 41, 108, 354, 363, 710, 850 |
| BstMBI | GATC | 2 cut(s) | 163, 864 |
| BstMCI | CGRYCG | 1 cut(s) | 156 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 94, 133, 416, 488, 573, 880 |
| BstSCI | CCNGG | 2 cut(s) | 336, 668 |
| BstSFI | CTRYAG | 2 cut(s) | 129, 875 |
| BstSLI | GKGCMC | 1 cut(s) | 394 |
| BstUI | CGCG | 2 cut(s) | 574, 843 |
| BstV1I | GCAGC | 3 cut(s) | 166, 676, 861 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 221 |
| BstZI | CGGCCG | 1 cut(s) | 153 |
| BsuRI | GGCC | 8 cut(s) | 23, 155, 190, 392, 410, 611, 812, 945 |
| BtsCI | GGATG | 3 cut(s) | 124, 210, 946 |
| BtsI | GCAGTG | 1 cut(s) | 869 |
| BtsIMutI | CAGTG | 3 cut(s) | 288, 469, 869 |
| Cac8I | GCNNGC | 8 cut(s) | 18, 138, 157, 210, 394, 539, 565, 793 |
| CfoI | GCGC | 5 cut(s) | 58, 179, 322, 336, 576 |
| Cfr10I | RCCGGY | 2 cut(s) | 155, 244 |
| Cfr13I | GGNCC | 7 cut(s) | 22, 144, 188, 297, 390, 391, 409 |
| CseI | GACGC | 3 cut(s) | 645, 797, 832 |
| CviAII | CATG | 1 cut(s) | 638 |
| DdeI | CTNAG | 3 cut(s) | 59, 345, 686 |
| DpnI | GATC | 2 cut(s) | 165, 866 |
| DpnII | GATC | 2 cut(s) | 163, 864 |
| EaeI | YGGCCR | 3 cut(s) | 153, 810, 943 |
| EagI | CGGCCG | 1 cut(s) | 153 |
| Eam1104I | CTCTTC | 2 cut(s) | 357, 530 |
| EarI | CTCTTC | 2 cut(s) | 357, 530 |
| EciI | GGCGGA | 4 cut(s) | 263, 737, 758, 785 |
| Ecl136II | GAGCTC | 1 cut(s) | 685 |
| EclXI | CGGCCG | 1 cut(s) | 153 |
| Eco24I | GRGCYC | 2 cut(s) | 394, 687 |
| Eco31I | GGTCTC | 1 cut(s) | 710 |
| Eco47I | GGWCC | 2 cut(s) | 144, 297 |
| Eco47III | AGCGCT | 1 cut(s) | 178 |
| Eco52I | CGGCCG | 1 cut(s) | 153 |
| Eco53kI | GAGCTC | 1 cut(s) | 685 |
| Eco57I | CTGAAG | 1 cut(s) | 586 |
| Eco88I | CYCGRG | 1 cut(s) | 44 |
| EcoICRI | GAGCTC | 1 cut(s) | 685 |
| EcoO109I | RGGNCCY | 2 cut(s) | 144, 390 |
| EcoT38I | GRGCYC | 2 cut(s) | 394, 687 |
| Esp3I | CGTCTC | 3 cut(s) | 41, 363, 850 |
| FaeI | CATG | 1 cut(s) | 641 |
| FaqI | GGGAC | 2 cut(s) | 157, 836 |
| FatI | CATG | 1 cut(s) | 637 |
| FauI | CCCGC | 9 cut(s) | 133, 152, 401, 463, 507, 556, 747, 800, 813 |
| FokI | GGATG | 3 cut(s) | 131, 217, 953 |
| FriOI | GRGCYC | 2 cut(s) | 394, 687 |
| FspBI | CTAG | 1 cut(s) | 323 |
| GlaI | GCGC | 5 cut(s) | 57, 178, 321, 335, 575 |
| GsaI | CCCAGC | 4 cut(s) | 28, 189, 309, 548 |
| GsuI | CTGGAG | 1 cut(s) | 692 |
| HaeII | RGCGCY | 4 cut(s) | 59, 180, 323, 337 |
| HaeIII | GGCC | 8 cut(s) | 23, 155, 190, 392, 410, 611, 812, 945 |
| HapII | CCGG | 5 cut(s) | 77, 156, 245, 337, 670 |
| HgaI | GACGC | 3 cut(s) | 645, 797, 832 |
| HhaI | GCGC | 5 cut(s) | 58, 179, 322, 336, 576 |
| Hin1I | GRCGYC | 2 cut(s) | 656, 789 |
| Hin1II | CATG | 1 cut(s) | 641 |
| Hin6I | GCGC | 5 cut(s) | 56, 177, 320, 334, 574 |
| HinP1I | GCGC | 5 cut(s) | 56, 177, 320, 334, 574 |
| HindIII | AAGCTT | 1 cut(s) | 800 |
| HinfI | GANTC | 3 cut(s) | 347, 473, 927 |
| HpaII | CCGG | 5 cut(s) | 77, 156, 245, 337, 670 |
| HphI | GGTGA | 2 cut(s) | 49, 94 |
| Hpy166II | GTNNAC | 1 cut(s) | 40 |
| Hpy188I | TCNGA | 4 cut(s) | 70, 168, 402, 701 |
| Hpy188III | TCNNGA | 2 cut(s) | 353, 709 |
| Hpy8I | GTNNAC | 1 cut(s) | 40 |
| Hpy99I | CGWCG | 2 cut(s) | 583, 661 |
| HpyAV | CCTTC | 5 cut(s) | 190, 400, 432, 500, 610 |
| HpyCH4III | ACNGT | 2 cut(s) | 34, 495 |
| HpyCH4IV | ACGT | 1 cut(s) | 50 |
| HpyCH4V | TGCA | 4 cut(s) | 136, 491, 877, 920 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 94, 133, 416, 488, 573, 880 |
| HpyF3I | CTNAG | 3 cut(s) | 59, 345, 686 |
| HpySE526I | ACGT | 1 cut(s) | 50 |
| Hsp92I | GRCGYC | 2 cut(s) | 656, 789 |
| Hsp92II | CATG | 1 cut(s) | 641 |
| HspAI | GCGC | 5 cut(s) | 56, 177, 320, 334, 574 |
| KflI | GGGWCCC | 1 cut(s) | 144 |
| KroI | GCCGGC | 1 cut(s) | 155 |
| KroNI | GCCGGC | 1 cut(s) | 157 |
| Kzo9I | GATC | 2 cut(s) | 163, 864 |
| LmnI | GCTCC | 5 cut(s) | 199, 424, 511, 856, 880 |
| Lsp1109I | GCAGC | 3 cut(s) | 166, 676, 861 |
| LweI | GCATC | 2 cut(s) | 75, 195 |
| MaeI | CTAG | 1 cut(s) | 323 |
| MaeII | ACGT | 1 cut(s) | 50 |
| MaeIII | GTNAC | 2 cut(s) | 262, 776 |
| MalI | GATC | 2 cut(s) | 165, 866 |
| MbiI | CCGCTC | 5 cut(s) | 202, 514, 541, 754, 883 |
| MboI | GATC | 2 cut(s) | 163, 864 |
| MboII | GAAGA | 5 cut(s) | 263, 374, 415, 517, 704 |
| MfeI | CAATTG | 1 cut(s) | 585 |
| MhlI | GDGCHC | 3 cut(s) | 229, 394, 687 |
| MluCI | AATT | 1 cut(s) | 585 |
| MluI | ACGCGT | 1 cut(s) | 841 |
| MlyI | GAGTC | 3 cut(s) | 356, 467, 936 |
| MmeI | TCCRAC | 1 cut(s) | 834 |
| MroNI | GCCGGC | 1 cut(s) | 155 |
| MseI | TTAA | 1 cut(s) | 804 |
| MslI | CAYNNNNRTG | 2 cut(s) | 219, 915 |
| MspA1I | CMGCKG | 1 cut(s) | 305 |
| MspI | CCGG | 5 cut(s) | 77, 156, 245, 337, 670 |
| MspR9I | CCNGG | 2 cut(s) | 338, 670 |
| MunI | CAATTG | 1 cut(s) | 585 |
| MvnI | CGCG | 2 cut(s) | 574, 843 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 94, 133, 416, 488, 573, 880 |
| NaeI | GCCGGC | 1 cut(s) | 157 |
| NciI | CCSGG | 2 cut(s) | 338, 670 |
| NdeII | GATC | 2 cut(s) | 163, 864 |
| NgoMIV | GCCGGC | 1 cut(s) | 155 |
| NlaIII | CATG | 1 cut(s) | 641 |
| NlaIV | GGNNCC | 9 cut(s) | 75, 145, 146, 276, 311, 391, 392, 420, 453 |
| NmeAIII | GCCGAG | 3 cut(s) | 34, 508, 587 |
| NmuCI | GTSAC | 2 cut(s) | 262, 776 |
| OliI | CACNNNNGTG | 1 cut(s) | 219 |
| PdiI | GCCGGC | 1 cut(s) | 157 |
| PleI | GAGTC | 3 cut(s) | 355, 467, 935 |
| PpsI | GAGTC | 3 cut(s) | 355, 467, 935 |
| PpuMI | RGGWCCY | 1 cut(s) | 144 |
| Psp124BI | GAGCTC | 1 cut(s) | 687 |
| Psp5II | RGGWCCY | 1 cut(s) | 144 |
| PspFI | CCCAGC | 4 cut(s) | 24, 185, 305, 544 |
| PspN4I | GGNNCC | 9 cut(s) | 75, 145, 146, 276, 311, 391, 392, 420, 453 |
| PspOMI | GGGCCC | 1 cut(s) | 390 |
| PspPI | GGNCC | 7 cut(s) | 22, 144, 188, 297, 390, 391, 409 |
| PspPPI | RGGWCCY | 1 cut(s) | 144 |
| PstI | CTGCAG | 1 cut(s) | 879 |
| RseI | CAYNNNNRTG | 2 cut(s) | 219, 915 |
| SacI | GAGCTC | 1 cut(s) | 687 |
| SaqAI | TTAA | 1 cut(s) | 804 |
| Sau3AI | GATC | 2 cut(s) | 163, 864 |
| Sau96I | GGNCC | 7 cut(s) | 22, 144, 188, 297, 390, 391, 409 |
| SchI | GAGTC | 3 cut(s) | 356, 467, 936 |
| ScrFI | CCNGG | 2 cut(s) | 338, 670 |
| SduI | GDGCHC | 3 cut(s) | 229, 394, 687 |
| SfaNI | GCATC | 2 cut(s) | 75, 195 |
| SfcI | CTRYAG | 2 cut(s) | 129, 875 |
| SinI | GGWCC | 2 cut(s) | 144, 297 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 219, 915 |
| Sse9I | AATT | 1 cut(s) | 585 |
| SspMI | CTAG | 1 cut(s) | 323 |
| SstI | GAGCTC | 1 cut(s) | 687 |
| StyD4I | CCNGG | 2 cut(s) | 336, 668 |
| TaaI | ACNGT | 2 cut(s) | 34, 495 |
| TaiI | ACGT | 1 cut(s) | 53 |
| TaqI | TCGA | 2 cut(s) | 293, 659 |
| TasI | AATT | 1 cut(s) | 585 |
| Tru1I | TTAA | 1 cut(s) | 804 |
| Tru9I | TTAA | 1 cut(s) | 804 |
| TscAI | CASTG | 3 cut(s) | 288, 469, 876 |
| TseFI | GTSAC | 2 cut(s) | 262, 776 |
| TseI | GCWGC | 3 cut(s) | 179, 664, 874 |
| Tsp45I | GTSAC | 2 cut(s) | 262, 776 |
| TspDTI | ATGAA | 2 cut(s) | 852, 966 |
| TspRI | CASTG | 3 cut(s) | 288, 469, 876 |
| VpaK11BI | GGWCC | 2 cut(s) | 144, 297 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 107 |
| XspI | CTAG | 1 cut(s) | 323 |