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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 11 |
| AccBSI | CCGCTC | 1 cut(s) | 265 |
| AccII | CGCG | 2 cut(s) | 38, 228 |
| AciI | CCGC | 5 cut(s) | 38, 187, 226, 228, 265 |
| AcyI | GRCGYC | 1 cut(s) | 12 |
| AgsI | TTSAA | 1 cut(s) | 251 |
| AjiI | CACGTC | 1 cut(s) | 277 |
| AjnI | CCWGG | 1 cut(s) | 15 |
| AluBI | AGCT | 2 cut(s) | 235, 286 |
| AluI | AGCT | 2 cut(s) | 235, 286 |
| Alw26I | GTCTC | 3 cut(s) | 143, 249, 283 |
| Ama87I | CYCGRG | 1 cut(s) | 92 |
| AspLEI | GCGC | 2 cut(s) | 14, 192 |
| AvaI | CYCGRG | 1 cut(s) | 92 |
| BanI | GGYRCC | 1 cut(s) | 11 |
| BciT130I | CCWGG | 1 cut(s) | 17 |
| BcoDI | GTCTC | 3 cut(s) | 143, 249, 283 |
| BfaI | CTAG | 2 cut(s) | 107, 287 |
| BfoI | RGCGCY | 2 cut(s) | 15, 193 |
| BisI | GCNGC | 2 cut(s) | 188, 229 |
| BlsI | GCNGC | 2 cut(s) | 189, 230 |
| Bme1390I | CCNGG | 1 cut(s) | 17 |
| BmeT110I | CYCGRG | 1 cut(s) | 92 |
| BmgBI | CACGTC | 1 cut(s) | 277 |
| BmiI | GGNNCC | 1 cut(s) | 13 |
| BmrFI | CCNGG | 1 cut(s) | 17 |
| BmsI | GCATC | 1 cut(s) | 211 |
| BpmI | CTGGAG | 1 cut(s) | 125 |
| Bpu10I | CCTNAGC | 1 cut(s) | 57 |
| BpuEI | CTTGAG | 1 cut(s) | 281 |
| BsaHI | GRCGYC | 1 cut(s) | 12 |
| BsaI | GGTCTC | 2 cut(s) | 143, 249 |
| BsaJI | CCNNGG | 3 cut(s) | 15, 198, 226 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 263, 293 |
| BseBI | CCWGG | 1 cut(s) | 17 |
| BseDI | CCNNGG | 3 cut(s) | 15, 198, 226 |
| BseGI | GGATG | 2 cut(s) | 130, 226 |
| BseMII | CTCAG | 1 cut(s) | 48 |
| Bsh1236I | CGCG | 2 cut(s) | 38, 228 |
| BshNI | GGYRCC | 1 cut(s) | 11 |
| BsiHKCI | CYCGRG | 1 cut(s) | 92 |
| BsmAI | GTCTC | 3 cut(s) | 143, 249, 283 |
| BsmBI | CGTCTC | 1 cut(s) | 283 |
| BsmI | GAATGC | 1 cut(s) | 212 |
| Bso31I | GGTCTC | 2 cut(s) | 143, 249 |
| BsoBI | CYCGRG | 1 cut(s) | 92 |
| Bsp143I | GATC | 1 cut(s) | 129 |
| Bsp19I | CCATGG | 1 cut(s) | 198 |
| BspACI | CCGC | 5 cut(s) | 38, 187, 226, 228, 265 |
| BspCNI | CTCAG | 1 cut(s) | 49 |
| BspFNI | CGCG | 2 cut(s) | 38, 228 |
| BspLI | GGNNCC | 1 cut(s) | 13 |
| BspT107I | GGYRCC | 1 cut(s) | 11 |
| BspTNI | GGTCTC | 2 cut(s) | 143, 249 |
| BsrBI | CCGCTC | 1 cut(s) | 265 |
| BssECI | CCNNGG | 3 cut(s) | 15, 198, 226 |
| BssMI | GATC | 1 cut(s) | 129 |
| BssNI | GRCGYC | 1 cut(s) | 12 |
| BssT1I | CCWWGG | 1 cut(s) | 198 |
| Bst2UI | CCWGG | 1 cut(s) | 17 |
| BstACI | GRCGYC | 1 cut(s) | 12 |
| BstC8I | GCNNGC | 3 cut(s) | 104, 226, 233 |
| BstDEI | CTNAG | 1 cut(s) | 57 |
| BstDSI | CCRYGG | 2 cut(s) | 198, 226 |
| BstF5I | GGATG | 2 cut(s) | 130, 226 |
| BstFNI | CGCG | 2 cut(s) | 38, 228 |
| BstH2I | RGCGCY | 2 cut(s) | 15, 193 |
| BstHHI | GCGC | 2 cut(s) | 14, 192 |
| BstKTI | GATC | 1 cut(s) | 132 |
| BstMAI | GTCTC | 3 cut(s) | 143, 249, 283 |
| BstMBI | GATC | 1 cut(s) | 129 |
| BstNI | CCWGG | 1 cut(s) | 17 |
| BstSCI | CCNGG | 1 cut(s) | 15 |
| BstUI | CGCG | 2 cut(s) | 38, 228 |
| BtgI | CCRYGG | 2 cut(s) | 198, 226 |
| BtrI | CACGTC | 1 cut(s) | 277 |
| BtsCI | GGATG | 2 cut(s) | 130, 226 |
| Cac8I | GCNNGC | 3 cut(s) | 104, 226, 233 |
| CfoI | GCGC | 2 cut(s) | 14, 192 |
| Cfr42I | CCGCGG | 1 cut(s) | 229 |
| CviAII | CATG | 1 cut(s) | 199 |
| CviJI | RGCY | 5 cut(s) | 91, 102, 106, 235, 286 |
| CviKI_1 | RGCY | 5 cut(s) | 91, 102, 106, 235, 286 |
| DdeI | CTNAG | 1 cut(s) | 57 |
| DinI | GGCGCC | 1 cut(s) | 13 |
| DpnI | GATC | 1 cut(s) | 131 |
| DpnII | GATC | 1 cut(s) | 129 |
| Eco130I | CCWWGG | 1 cut(s) | 198 |
| Eco31I | GGTCTC | 2 cut(s) | 143, 249 |
| Eco88I | CYCGRG | 1 cut(s) | 92 |
| EcoRII | CCWGG | 1 cut(s) | 15 |
| EcoT14I | CCWWGG | 1 cut(s) | 198 |
| EgeI | GGCGCC | 1 cut(s) | 13 |
| EheI | GGCGCC | 1 cut(s) | 13 |
| ErhI | CCWWGG | 1 cut(s) | 198 |
| Esp3I | CGTCTC | 1 cut(s) | 283 |
| FaeI | CATG | 1 cut(s) | 202 |
| FaiI | YATR | 3 cut(s) | 113, 119, 200 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 176, 208 |
| FatI | CATG | 1 cut(s) | 198 |
| FauI | CCCGC | 1 cut(s) | 233 |
| Fnu4HI | GCNGC | 2 cut(s) | 188, 229 |
| FokI | GGATG | 2 cut(s) | 137, 233 |
| Fsp4HI | GCNGC | 2 cut(s) | 188, 229 |
| FspBI | CTAG | 2 cut(s) | 107, 287 |
| GlaI | GCGC | 2 cut(s) | 13, 191 |
| GluI | GCNGC | 2 cut(s) | 188, 229 |
| GsuI | CTGGAG | 1 cut(s) | 125 |
| HaeII | RGCGCY | 2 cut(s) | 15, 193 |
| HhaI | GCGC | 2 cut(s) | 14, 192 |
| Hin1I | GRCGYC | 1 cut(s) | 12 |
| Hin1II | CATG | 1 cut(s) | 202 |
| Hin6I | GCGC | 2 cut(s) | 12, 190 |
| HinP1I | GCGC | 2 cut(s) | 12, 190 |
| HinfI | GANTC | 1 cut(s) | 20 |
| Hpy188I | TCNGA | 1 cut(s) | 48 |
| Hpy188III | TCNNGA | 2 cut(s) | 56, 142 |
| Hpy99I | CGWCG | 1 cut(s) | 215 |
| HpyAV | CCTTC | 2 cut(s) | 139, 157 |
| HpyCH4IV | ACGT | 2 cut(s) | 213, 276 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF3I | CTNAG | 1 cut(s) | 57 |
| HpySE526I | ACGT | 2 cut(s) | 213, 276 |
| Hsp92I | GRCGYC | 1 cut(s) | 12 |
| Hsp92II | CATG | 1 cut(s) | 202 |
| HspAI | GCGC | 2 cut(s) | 12, 190 |
| KasI | GGCGCC | 1 cut(s) | 11 |
| KspI | CCGCGG | 1 cut(s) | 229 |
| Kzo9I | GATC | 1 cut(s) | 129 |
| LpnPI | CCDG | 6 cut(s) | 2, 29, 69, 73, 88, 155 |
| LweI | GCATC | 1 cut(s) | 211 |
| MaeI | CTAG | 2 cut(s) | 107, 287 |
| MaeII | ACGT | 2 cut(s) | 213, 276 |
| MalI | GATC | 1 cut(s) | 131 |
| MbiI | CCGCTC | 1 cut(s) | 265 |
| MboI | GATC | 1 cut(s) | 129 |
| Mly113I | GGCGCC | 1 cut(s) | 12 |
| MlyI | GAGTC | 1 cut(s) | 14 |
| MnlI | CCTC | 2 cut(s) | 114, 151 |
| MspA1I | CMGCKG | 1 cut(s) | 228 |
| MspR9I | CCNGG | 1 cut(s) | 17 |
| Mva1269I | GAATGC | 1 cut(s) | 212 |
| MvaI | CCWGG | 1 cut(s) | 17 |
| MvnI | CGCG | 2 cut(s) | 38, 228 |
| NarI | GGCGCC | 1 cut(s) | 12 |
| NcoI | CCATGG | 1 cut(s) | 198 |
| NdeII | GATC | 1 cut(s) | 129 |
| NlaIII | CATG | 1 cut(s) | 202 |
| NlaIV | GGNNCC | 1 cut(s) | 13 |
| PctI | GAATGC | 1 cut(s) | 212 |
| PflFI | GACNNNGTC | 1 cut(s) | 275 |
| PkrI | GCNGC | 2 cut(s) | 189, 230 |
| PleI | GAGTC | 1 cut(s) | 14 |
| PluTI | GGCGCC | 1 cut(s) | 15 |
| PpsI | GAGTC | 1 cut(s) | 14 |
| Psp6I | CCWGG | 1 cut(s) | 15 |
| PspGI | CCWGG | 1 cut(s) | 15 |
| PspN4I | GGNNCC | 1 cut(s) | 13 |
| PsyI | GACNNNGTC | 1 cut(s) | 275 |
| SacII | CCGCGG | 1 cut(s) | 229 |
| SatI | GCNGC | 2 cut(s) | 188, 229 |
| Sau3AI | GATC | 1 cut(s) | 129 |
| SchI | GAGTC | 1 cut(s) | 14 |
| ScrFI | CCNGG | 1 cut(s) | 17 |
| SetI | ASST | 9 cut(s) | 53, 81, 139, 174, 216, 237, 261, 279, 288 |
| SfaNI | GCATC | 1 cut(s) | 211 |
| SfoI | GGCGCC | 1 cut(s) | 13 |
| Sfr303I | CCGCGG | 1 cut(s) | 229 |
| SgrBI | CCGCGG | 1 cut(s) | 229 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| SsiI | CCGC | 5 cut(s) | 38, 187, 226, 228, 265 |
| SspDI | GGCGCC | 1 cut(s) | 11 |
| SspMI | CTAG | 2 cut(s) | 107, 287 |
| StyD4I | CCNGG | 1 cut(s) | 15 |
| StyI | CCWWGG | 1 cut(s) | 198 |
| TaiI | ACGT | 2 cut(s) | 216, 279 |
| TauI | GCSGC | 2 cut(s) | 190, 231 |
| Tth111I | GACNNNGTC | 1 cut(s) | 275 |
| XspI | CTAG | 2 cut(s) | 107, 287 |