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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 206 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 216 |
| AccBSI | CCGCTC | 1 cut(s) | 34 |
| AccII | CGCG | 1 cut(s) | 479 |
| AciI | CCGC | 6 cut(s) | 34, 132, 273, 284, 398, 440 |
| AclWI | GGATC | 4 cut(s) | 104, 270, 283, 323 |
| AcoI | YGGCCR | 1 cut(s) | 410 |
| AcuI | CTGAAG | 1 cut(s) | 92 |
| AcyI | GRCGYC | 1 cut(s) | 207 |
| AfaI | GTAC | 1 cut(s) | 406 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 172, 216, 263, 312, 348, 373, 449 |
| AgsI | TTSAA | 1 cut(s) | 196 |
| AjnI | CCWGG | 1 cut(s) | 292 |
| AluBI | AGCT | 1 cut(s) | 190 |
| AluI | AGCT | 1 cut(s) | 190 |
| Alw21I | GWGCWC | 3 cut(s) | 57, 192, 303 |
| Alw26I | GTCTC | 1 cut(s) | 382 |
| AlwI | GGATC | 4 cut(s) | 104, 270, 283, 323 |
| AoxI | GGCC | 4 cut(s) | 81, 339, 384, 410 |
| ApeKI | GCWGC | 2 cut(s) | 161, 481 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 227 |
| AspLEI | GCGC | 3 cut(s) | 209, 479, 481 |
| AspS9I | GGNCC | 3 cut(s) | 81, 384, 420 |
| AsuC2I | CCSGG | 1 cut(s) | 409 |
| AsuHPI | GGTGA | 1 cut(s) | 151 |
| AsuNHI | GCTAGC | 1 cut(s) | 239 |
| AvaII | GGWCC | 1 cut(s) | 420 |
| BamHI | GGATCC | 1 cut(s) | 275 |
| BanI | GGYRCC | 1 cut(s) | 206 |
| BanII | GRGCYC | 1 cut(s) | 192 |
| Bbv12I | GWGCWC | 3 cut(s) | 57, 192, 303 |
| BbvI | GCAGC | 2 cut(s) | 148, 493 |
| BccI | CCATC | 5 cut(s) | 23, 70, 257, 265, 431 |
| BciT130I | CCWGG | 1 cut(s) | 294 |
| BclI | TGATCA | 1 cut(s) | 322 |
| BcnI | CCSGG | 1 cut(s) | 409 |
| BcoDI | GTCTC | 1 cut(s) | 382 |
| BfaI | CTAG | 2 cut(s) | 240, 381 |
| BfoI | RGCGCY | 1 cut(s) | 210 |
| BisI | GCNGC | 3 cut(s) | 162, 399, 482 |
| BlsI | GCNGC | 3 cut(s) | 163, 400, 483 |
| Bme1390I | CCNGG | 2 cut(s) | 294, 409 |
| Bme18I | GGWCC | 1 cut(s) | 420 |
| BmgT120I | GGNCC | 3 cut(s) | 81, 384, 420 |
| BmiI | GGNNCC | 4 cut(s) | 82, 208, 277, 454 |
| BmrFI | CCNGG | 2 cut(s) | 294, 409 |
| BmrI | ACTGGG | 3 cut(s) | 160, 226, 361 |
| BmtI | GCTAGC | 1 cut(s) | 243 |
| BmuI | ACTGGG | 3 cut(s) | 160, 226, 361 |
| BpmI | CTGGAG | 1 cut(s) | 41 |
| BpuEI | CTTGAG | 1 cut(s) | 50 |
| BpuMI | CCSGG | 1 cut(s) | 409 |
| BsaBI | GATNNNNATC | 1 cut(s) | 327 |
| BsaHI | GRCGYC | 1 cut(s) | 207 |
| BsaI | GGTCTC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 4 cut(s) | 84, 135, 279, 372 |
| BsaWI | WCCGGW | 1 cut(s) | 417 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 107, 137 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 172, 216, 263, 312, 348, 373, 449 |
| Bse118I | RCCGGY | 1 cut(s) | 490 |
| Bse1I | ACTGG | 3 cut(s) | 166, 221, 367 |
| Bse8I | GATNNNNATC | 1 cut(s) | 327 |
| BseBI | CCWGG | 1 cut(s) | 294 |
| BseDI | CCNNGG | 4 cut(s) | 84, 135, 279, 372 |
| BseGI | GGATG | 1 cut(s) | 249 |
| BseJI | GATNNNNATC | 1 cut(s) | 327 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 172, 216, 263, 312, 348, 373, 449 |
| BseNI | ACTGG | 3 cut(s) | 166, 221, 367 |
| BsePI | GCGCGC | 1 cut(s) | 477 |
| BseRI | GAGGAG | 1 cut(s) | 196 |
| BseXI | GCAGC | 2 cut(s) | 148, 493 |
| Bsh1236I | CGCG | 1 cut(s) | 479 |
| BshFI | GGCC | 4 cut(s) | 83, 341, 386, 412 |
| BshNI | GGYRCC | 1 cut(s) | 206 |
| BsiHKAI | GWGCWC | 3 cut(s) | 57, 192, 303 |
| BsiSI | CCGG | 4 cut(s) | 306, 409, 418, 491 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 172, 216, 263, 312, 348, 373, 449 |
| BsmAI | GTCTC | 1 cut(s) | 382 |
| BsnI | GGCC | 4 cut(s) | 83, 341, 386, 412 |
| Bso31I | GGTCTC | 1 cut(s) | 382 |
| Bsp1286I | GDGCHC | 3 cut(s) | 57, 192, 303 |
| Bsp143I | GATC | 5 cut(s) | 96, 275, 322, 328, 457 |
| BspACI | CCGC | 6 cut(s) | 34, 132, 273, 284, 398, 440 |
| BspANI | GGCC | 4 cut(s) | 83, 341, 386, 412 |
| BspFNI | CGCG | 1 cut(s) | 479 |
| BspHI | TCATGA | 2 cut(s) | 325, 426 |
| BspLI | GGNNCC | 4 cut(s) | 82, 208, 277, 454 |
| BspOI | GCTAGC | 1 cut(s) | 243 |
| BspPI | GGATC | 4 cut(s) | 104, 270, 283, 323 |
| BspT107I | GGYRCC | 1 cut(s) | 206 |
| BspTNI | GGTCTC | 1 cut(s) | 382 |
| BsrBI | CCGCTC | 1 cut(s) | 34 |
| BsrFI | RCCGGY | 1 cut(s) | 490 |
| BsrI | ACTGG | 3 cut(s) | 166, 221, 367 |
| BssAI | RCCGGY | 1 cut(s) | 490 |
| BssECI | CCNNGG | 4 cut(s) | 84, 135, 279, 372 |
| BssHII | GCGCGC | 1 cut(s) | 477 |
| BssMI | GATC | 5 cut(s) | 96, 275, 322, 328, 457 |
| BssNI | GRCGYC | 1 cut(s) | 207 |
| BssT1I | CCWWGG | 1 cut(s) | 84 |
| Bst2UI | CCWGG | 1 cut(s) | 294 |
| Bst6I | CTCTTC | 1 cut(s) | 137 |
| BstACI | GRCGYC | 1 cut(s) | 207 |
| BstC8I | GCNNGC | 6 cut(s) | 188, 241, 299, 440, 479, 492 |
| BstF5I | GGATG | 1 cut(s) | 249 |
| BstFNI | CGCG | 1 cut(s) | 479 |
| BstH2I | RGCGCY | 1 cut(s) | 210 |
| BstHHI | GCGC | 3 cut(s) | 209, 479, 481 |
| BstKTI | GATC | 5 cut(s) | 99, 278, 325, 331, 460 |
| BstMAI | GTCTC | 1 cut(s) | 382 |
| BstMBI | GATC | 5 cut(s) | 96, 275, 322, 328, 457 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 298, 487 |
| BstNI | CCWGG | 1 cut(s) | 294 |
| BstSCI | CCNGG | 2 cut(s) | 292, 407 |
| BstUI | CGCG | 1 cut(s) | 479 |
| BstV1I | GCAGC | 2 cut(s) | 148, 493 |
| BstX2I | RGATCY | 1 cut(s) | 275 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 394 |
| BstYI | RGATCY | 1 cut(s) | 275 |
| BsuRI | GGCC | 4 cut(s) | 83, 341, 386, 412 |
| BtsCI | GGATG | 1 cut(s) | 249 |
| BtsI | GCAGTG | 1 cut(s) | 316 |
| BtsIMutI | CAGTG | 1 cut(s) | 316 |
| Cac8I | GCNNGC | 6 cut(s) | 188, 241, 299, 440, 479, 492 |
| CciI | TCATGA | 2 cut(s) | 325, 426 |
| CfoI | GCGC | 3 cut(s) | 209, 479, 481 |
| Cfr10I | RCCGGY | 1 cut(s) | 490 |
| Cfr13I | GGNCC | 3 cut(s) | 81, 384, 420 |
| Csp6I | GTAC | 1 cut(s) | 405 |
| CviAII | CATG | 4 cut(s) | 326, 356, 427, 449 |
| CviQI | GTAC | 1 cut(s) | 405 |
| DinI | GGCGCC | 1 cut(s) | 208 |
| DpnI | GATC | 5 cut(s) | 98, 277, 324, 330, 459 |
| DpnII | GATC | 5 cut(s) | 96, 275, 322, 328, 457 |
| EaeI | YGGCCR | 1 cut(s) | 410 |
| Eam1104I | CTCTTC | 1 cut(s) | 137 |
| EarI | CTCTTC | 1 cut(s) | 137 |
| EciI | GGCGGA | 2 cut(s) | 121, 288 |
| Ecl136II | GAGCTC | 1 cut(s) | 190 |
| Eco130I | CCWWGG | 1 cut(s) | 84 |
| Eco147I | AGGCCT | 1 cut(s) | 341 |
| Eco24I | GRGCYC | 1 cut(s) | 192 |
| Eco31I | GGTCTC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 1 cut(s) | 420 |
| Eco53kI | GAGCTC | 1 cut(s) | 190 |
| Eco57I | CTGAAG | 1 cut(s) | 92 |
| EcoICRI | GAGCTC | 1 cut(s) | 190 |
| EcoRII | CCWGG | 1 cut(s) | 292 |
| EcoT14I | CCWWGG | 1 cut(s) | 84 |
| EcoT38I | GRGCYC | 1 cut(s) | 192 |
| EgeI | GGCGCC | 1 cut(s) | 208 |
| EheI | GGCGCC | 1 cut(s) | 208 |
| ErhI | CCWWGG | 1 cut(s) | 84 |
| FaeI | CATG | 4 cut(s) | 329, 359, 430, 452 |
| FaiI | YATR | 9 cut(s) | 68, 327, 335, 357, 428, 450, 471, 473, 496 |
| FatI | CATG | 4 cut(s) | 325, 355, 426, 448 |
| FauI | CCCGC | 1 cut(s) | 447 |
| FauNDI | CATATG | 1 cut(s) | 471 |
| FbaI | TGATCA | 1 cut(s) | 322 |
| Fnu4HI | GCNGC | 3 cut(s) | 162, 399, 482 |
| FokI | GGATG | 1 cut(s) | 236 |
| FriOI | GRGCYC | 1 cut(s) | 192 |
| Fsp4HI | GCNGC | 3 cut(s) | 162, 399, 482 |
| FspBI | CTAG | 2 cut(s) | 240, 381 |
| GlaI | GCGC | 3 cut(s) | 208, 478, 480 |
| GluI | GCNGC | 3 cut(s) | 162, 399, 482 |
| GsuI | CTGGAG | 1 cut(s) | 41 |
| HaeII | RGCGCY | 1 cut(s) | 210 |
| HaeIII | GGCC | 4 cut(s) | 83, 341, 386, 412 |
| HapII | CCGG | 4 cut(s) | 306, 409, 418, 491 |
| HhaI | GCGC | 3 cut(s) | 209, 479, 481 |
| Hin1I | GRCGYC | 1 cut(s) | 207 |
| Hin1II | CATG | 4 cut(s) | 329, 359, 430, 452 |
| Hin6I | GCGC | 3 cut(s) | 207, 477, 479 |
| HinP1I | GCGC | 3 cut(s) | 207, 477, 479 |
| HinfI | GANTC | 2 cut(s) | 116, 352 |
| HpaII | CCGG | 4 cut(s) | 306, 409, 418, 491 |
| HphI | GGTGA | 1 cut(s) | 151 |
| Hpy188I | TCNGA | 5 cut(s) | 111, 266, 373, 457, 462 |
| Hpy188III | TCNNGA | 3 cut(s) | 193, 326, 427 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 298, 487 |
| Hsp92I | GRCGYC | 1 cut(s) | 207 |
| Hsp92II | CATG | 4 cut(s) | 329, 359, 430, 452 |
| HspAI | GCGC | 3 cut(s) | 207, 477, 479 |
| KasI | GGCGCC | 1 cut(s) | 206 |
| KroI | GCCGGC | 1 cut(s) | 490 |
| KroNI | GCCGGC | 1 cut(s) | 492 |
| Ksp22I | TGATCA | 1 cut(s) | 322 |
| Kzo9I | GATC | 5 cut(s) | 96, 275, 322, 328, 457 |
| LmnI | GCTCC | 3 cut(s) | 60, 183, 458 |
| Lsp1109I | GCAGC | 2 cut(s) | 148, 493 |
| MaeI | CTAG | 2 cut(s) | 240, 381 |
| MalI | GATC | 5 cut(s) | 98, 277, 324, 330, 459 |
| MbiI | CCGCTC | 1 cut(s) | 34 |
| MboI | GATC | 5 cut(s) | 96, 275, 322, 328, 457 |
| MboII | GAAGA | 2 cut(s) | 98, 154 |
| MflI | RGATCY | 1 cut(s) | 275 |
| MhlI | GDGCHC | 3 cut(s) | 57, 192, 303 |
| Mly113I | GGCGCC | 1 cut(s) | 207 |
| MlyI | GAGTC | 2 cut(s) | 110, 346 |
| MmeI | TCCRAC | 1 cut(s) | 244 |
| MroNI | GCCGGC | 1 cut(s) | 490 |
| MroXI | GAANNNNTTC | 1 cut(s) | 227 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 1 cut(s) | 50 |
| MspI | CCGG | 4 cut(s) | 306, 409, 418, 491 |
| MspR9I | CCNGG | 2 cut(s) | 294, 409 |
| MvaI | CCWGG | 1 cut(s) | 294 |
| MvnI | CGCG | 1 cut(s) | 479 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 298, 487 |
| NaeI | GCCGGC | 1 cut(s) | 492 |
| NarI | GGCGCC | 1 cut(s) | 207 |
| NciI | CCSGG | 1 cut(s) | 409 |
| NdeI | CATATG | 1 cut(s) | 471 |
| NdeII | GATC | 5 cut(s) | 96, 275, 322, 328, 457 |
| NgoMIV | GCCGGC | 1 cut(s) | 490 |
| NheI | GCTAGC | 1 cut(s) | 239 |
| NlaIII | CATG | 4 cut(s) | 329, 359, 430, 452 |
| NlaIV | GGNNCC | 4 cut(s) | 82, 208, 277, 454 |
| NmeAIII | GCCGAG | 2 cut(s) | 160, 260 |
| PagI | TCATGA | 2 cut(s) | 325, 426 |
| PauI | GCGCGC | 1 cut(s) | 477 |
| PceI | AGGCCT | 1 cut(s) | 341 |
| PdiI | GCCGGC | 1 cut(s) | 492 |
| PdmI | GAANNNNTTC | 1 cut(s) | 227 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 216 |
| PkrI | GCNGC | 3 cut(s) | 163, 400, 483 |
| PleI | GAGTC | 2 cut(s) | 110, 346 |
| PluTI | GGCGCC | 1 cut(s) | 210 |
| PpsI | GAGTC | 2 cut(s) | 110, 346 |
| Psp124BI | GAGCTC | 1 cut(s) | 192 |
| Psp6I | CCWGG | 1 cut(s) | 292 |
| PspGI | CCWGG | 1 cut(s) | 292 |
| PspN4I | GGNNCC | 4 cut(s) | 82, 208, 277, 454 |
| PspPI | GGNCC | 3 cut(s) | 81, 384, 420 |
| PsuI | RGATCY | 1 cut(s) | 275 |
| PteI | GCGCGC | 1 cut(s) | 477 |
| RsaI | GTAC | 1 cut(s) | 406 |
| RsaNI | GTAC | 1 cut(s) | 405 |
| RseI | CAYNNNNRTG | 1 cut(s) | 50 |
| SacI | GAGCTC | 1 cut(s) | 192 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 3 cut(s) | 162, 399, 482 |
| Sau3AI | GATC | 5 cut(s) | 96, 275, 322, 328, 457 |
| Sau96I | GGNCC | 3 cut(s) | 81, 384, 420 |
| SchI | GAGTC | 2 cut(s) | 110, 346 |
| ScrFI | CCNGG | 2 cut(s) | 294, 409 |
| SduI | GDGCHC | 3 cut(s) | 57, 192, 303 |
| SetI | ASST | 6 cut(s) | 30, 90, 141, 177, 192, 378 |
| SfoI | GGCGCC | 1 cut(s) | 208 |
| SinI | GGWCC | 1 cut(s) | 420 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 50 |
| SmlI | CTYRAG | 1 cut(s) | 29 |
| SmoI | CTYRAG | 1 cut(s) | 29 |
| SseBI | AGGCCT | 1 cut(s) | 341 |
| SsiI | CCGC | 6 cut(s) | 34, 132, 273, 284, 398, 440 |
| SspDI | GGCGCC | 1 cut(s) | 206 |
| SspMI | CTAG | 2 cut(s) | 240, 381 |
| SstI | GAGCTC | 1 cut(s) | 192 |
| StuI | AGGCCT | 1 cut(s) | 341 |
| StyD4I | CCNGG | 2 cut(s) | 292, 407 |
| StyI | CCWWGG | 1 cut(s) | 84 |
| TaqI | TCGA | 2 cut(s) | 18, 99 |
| TauI | GCSGC | 1 cut(s) | 401 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TseI | GCWGC | 2 cut(s) | 161, 481 |
| TspGWI | ACGGA | 1 cut(s) | 364 |
| TspRI | CASTG | 1 cut(s) | 316 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 216 |
| VpaK11BI | GGWCC | 1 cut(s) | 420 |
| XmnI | GAANNNNTTC | 1 cut(s) | 227 |
| XspI | CTAG | 2 cut(s) | 240, 381 |