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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 61 |
| AccB1I | GGYRCC | 2 cut(s) | 76, 115 |
| AccBSI | CCGCTC | 5 cut(s) | 357, 433, 571, 712, 724 |
| AccI | GTMKAC | 1 cut(s) | 470 |
| AccII | CGCG | 1 cut(s) | 211 |
| AcuI | CTGAAG | 2 cut(s) | 478, 584 |
| AcyI | GRCGYC | 3 cut(s) | 77, 548, 681 |
| AfaI | GTAC | 2 cut(s) | 208, 352 |
| AjiI | CACGTC | 2 cut(s) | 334, 514 |
| AjnI | CCWGG | 3 cut(s) | 540, 561, 621 |
| AleI | CACNNNNGTG | 1 cut(s) | 21 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 396, 428 |
| AluBI | AGCT | 4 cut(s) | 577, 694, 745, 789 |
| AluI | AGCT | 4 cut(s) | 577, 694, 745, 789 |
| Alw21I | GWGCWC | 1 cut(s) | 579 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 562 |
| Ama87I | CYCGRG | 1 cut(s) | 244 |
| AoxI | GGCC | 5 cut(s) | 279, 595, 618, 660, 759 |
| ApeKI | GCWGC | 2 cut(s) | 197, 289 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 217, 249 |
| AspLEI | GCGC | 3 cut(s) | 79, 97, 135 |
| AspS9I | GGNCC | 8 cut(s) | 54, 213, 279, 595, 619, 661, 760, 772 |
| AsuC2I | CCSGG | 1 cut(s) | 277 |
| AsuHPI | GGTGA | 4 cut(s) | 38, 142, 413, 413 |
| AvaI | CYCGRG | 1 cut(s) | 244 |
| AvaII | GGWCC | 3 cut(s) | 54, 213, 772 |
| AxyI | CCTNAGG | 1 cut(s) | 318 |
| BaeGI | GKGCMC | 1 cut(s) | 513 |
| BanI | GGYRCC | 2 cut(s) | 76, 115 |
| BanII | GRGCYC | 1 cut(s) | 579 |
| Bbv12I | GWGCWC | 1 cut(s) | 579 |
| BbvI | GCAGC | 2 cut(s) | 184, 301 |
| BccI | CCATC | 1 cut(s) | 23 |
| BceAI | ACGGC | 3 cut(s) | 122, 216, 461 |
| BciT130I | CCWGG | 3 cut(s) | 542, 563, 623 |
| BcnI | CCSGG | 1 cut(s) | 277 |
| BfaI | CTAG | 1 cut(s) | 66 |
| BfoI | RGCGCY | 2 cut(s) | 80, 98 |
| Bme1390I | CCNGG | 4 cut(s) | 277, 542, 563, 623 |
| Bme18I | GGWCC | 3 cut(s) | 54, 213, 772 |
| BmeT110I | CYCGRG | 1 cut(s) | 244 |
| BmgBI | CACGTC | 2 cut(s) | 334, 514 |
| BmgT120I | GGNCC | 8 cut(s) | 54, 213, 279, 595, 619, 661, 760, 772 |
| BmiI | GGNNCC | 8 cut(s) | 55, 78, 117, 168, 280, 312, 324, 773 |
| BmrFI | CCNGG | 4 cut(s) | 277, 542, 563, 623 |
| BmsI | GCATC | 1 cut(s) | 661 |
| BoxI | GACNNNNGTC | 1 cut(s) | 476 |
| BpmI | CTGGAG | 2 cut(s) | 222, 767 |
| Bpu10I | CCTNAGC | 1 cut(s) | 578 |
| BpuMI | CCSGG | 1 cut(s) | 277 |
| BsaHI | GRCGYC | 3 cut(s) | 77, 548, 681 |
| BsaJI | CCNNGG | 7 cut(s) | 19, 80, 276, 541, 561, 621, 685 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 401, 431 |
| Bse118I | RCCGGY | 2 cut(s) | 56, 97 |
| Bse21I | CCTNAGG | 1 cut(s) | 318 |
| Bse3DI | GCAATG | 1 cut(s) | 699 |
| BseBI | CCWGG | 3 cut(s) | 542, 563, 623 |
| BseDI | CCNNGG | 7 cut(s) | 19, 80, 276, 541, 561, 621, 685 |
| BseMI | GCAATG | 1 cut(s) | 699 |
| BseMII | CTCAG | 3 cut(s) | 233, 309, 592 |
| BseSI | GKGCMC | 1 cut(s) | 513 |
| BseXI | GCAGC | 2 cut(s) | 184, 301 |
| BseYI | CCCAGC | 1 cut(s) | 436 |
| Bsh1236I | CGCG | 1 cut(s) | 211 |
| Bsh1285I | CGRYCG | 2 cut(s) | 470, 474 |
| BshFI | GGCC | 5 cut(s) | 281, 597, 620, 662, 761 |
| BshNI | GGYRCC | 2 cut(s) | 76, 115 |
| BsiEI | CGRYCG | 2 cut(s) | 470, 474 |
| BsiHKAI | GWGCWC | 1 cut(s) | 579 |
| BsiHKCI | CYCGRG | 1 cut(s) | 244 |
| BsiSI | CCGG | 3 cut(s) | 57, 98, 276 |
| BslFI | GGGAC | 2 cut(s) | 67, 620 |
| BsmFI | GGGAC | 2 cut(s) | 67, 620 |
| BsnI | GGCC | 5 cut(s) | 281, 597, 620, 662, 761 |
| BsoBI | CYCGRG | 1 cut(s) | 244 |
| Bsp1286I | GDGCHC | 2 cut(s) | 513, 579 |
| Bsp143I | GATC | 1 cut(s) | 463 |
| BspANI | GGCC | 5 cut(s) | 281, 597, 620, 662, 761 |
| BspCNI | CTCAG | 3 cut(s) | 232, 310, 591 |
| BspFNI | CGCG | 1 cut(s) | 211 |
| BspLI | GGNNCC | 8 cut(s) | 55, 78, 117, 168, 280, 312, 324, 773 |
| BspT107I | GGYRCC | 2 cut(s) | 76, 115 |
| BsrBI | CCGCTC | 5 cut(s) | 357, 433, 571, 712, 724 |
| BsrDI | GCAATG | 1 cut(s) | 699 |
| BsrFI | RCCGGY | 2 cut(s) | 56, 97 |
| BssAI | RCCGGY | 2 cut(s) | 56, 97 |
| BssECI | CCNNGG | 7 cut(s) | 19, 80, 276, 541, 561, 621, 685 |
| BssMI | GATC | 1 cut(s) | 463 |
| BssNI | GRCGYC | 3 cut(s) | 77, 548, 681 |
| BssT1I | CCWWGG | 1 cut(s) | 19 |
| Bst2UI | CCWGG | 3 cut(s) | 542, 563, 623 |
| Bst4CI | ACNGT | 2 cut(s) | 401, 735 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstACI | GRCGYC | 3 cut(s) | 77, 548, 681 |
| BstC8I | GCNNGC | 9 cut(s) | 39, 99, 192, 283, 287, 309, 431, 595, 692 |
| BstDEI | CTNAG | 3 cut(s) | 219, 318, 578 |
| BstDSI | CCRYGG | 1 cut(s) | 685 |
| BstEII | GGTNACC | 1 cut(s) | 271 |
| BstFNI | CGCG | 1 cut(s) | 211 |
| BstH2I | RGCGCY | 2 cut(s) | 80, 98 |
| BstHHI | GCGC | 3 cut(s) | 79, 97, 135 |
| BstKTI | GATC | 1 cut(s) | 466 |
| BstMBI | GATC | 1 cut(s) | 463 |
| BstMCI | CGRYCG | 2 cut(s) | 470, 474 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 47, 66, 115, 191, 335, 380, 680, 721, 786 |
| BstNI | CCWGG | 3 cut(s) | 542, 563, 623 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 476 |
| BstPI | GGTNACC | 1 cut(s) | 271 |
| BstSCI | CCNGG | 4 cut(s) | 275, 540, 561, 621 |
| BstSLI | GKGCMC | 1 cut(s) | 513 |
| BstUI | CGCG | 1 cut(s) | 211 |
| BstV1I | GCAGC | 2 cut(s) | 184, 301 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 23 |
| Bsu36I | CCTNAGG | 1 cut(s) | 318 |
| BsuRI | GGCC | 5 cut(s) | 281, 597, 620, 662, 761 |
| BtgI | CCRYGG | 1 cut(s) | 685 |
| BtgZI | GCGATG | 1 cut(s) | 684 |
| BtrI | CACGTC | 2 cut(s) | 334, 514 |
| BtsI | GCAGTG | 1 cut(s) | 664 |
| BtsIMutI | CAGTG | 1 cut(s) | 664 |
| Cac8I | GCNNGC | 9 cut(s) | 39, 99, 192, 283, 287, 309, 431, 595, 692 |
| CaiI | CAGNNNCTG | 1 cut(s) | 562 |
| CfoI | GCGC | 3 cut(s) | 79, 97, 135 |
| Cfr10I | RCCGGY | 2 cut(s) | 56, 97 |
| Cfr13I | GGNCC | 8 cut(s) | 54, 213, 279, 595, 619, 661, 760, 772 |
| CseI | GACGC | 3 cut(s) | 537, 657, 689 |
| Csp6I | GTAC | 2 cut(s) | 207, 351 |
| CviAII | CATG | 2 cut(s) | 530, 757 |
| CviQI | GTAC | 2 cut(s) | 207, 351 |
| DdeI | CTNAG | 3 cut(s) | 219, 318, 578 |
| DinI | GGCGCC | 1 cut(s) | 78 |
| DpnI | GATC | 1 cut(s) | 465 |
| DpnII | GATC | 1 cut(s) | 463 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 61 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 61 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| EciI | GGCGGA | 1 cut(s) | 764 |
| Ecl136II | GAGCTC | 1 cut(s) | 577 |
| Eco130I | CCWWGG | 1 cut(s) | 19 |
| Eco24I | GRGCYC | 1 cut(s) | 579 |
| Eco47I | GGWCC | 3 cut(s) | 54, 213, 772 |
| Eco53kI | GAGCTC | 1 cut(s) | 577 |
| Eco57I | CTGAAG | 2 cut(s) | 478, 584 |
| Eco81I | CCTNAGG | 1 cut(s) | 318 |
| Eco88I | CYCGRG | 1 cut(s) | 244 |
| Eco91I | GGTNACC | 1 cut(s) | 271 |
| EcoICRI | GAGCTC | 1 cut(s) | 577 |
| EcoO65I | GGTNACC | 1 cut(s) | 271 |
| EcoRII | CCWGG | 3 cut(s) | 540, 561, 621 |
| EcoT14I | CCWWGG | 1 cut(s) | 19 |
| EcoT38I | GRGCYC | 1 cut(s) | 579 |
| EgeI | GGCGCC | 1 cut(s) | 78 |
| EheI | GGCGCC | 1 cut(s) | 78 |
| ErhI | CCWWGG | 1 cut(s) | 19 |
| FaeI | CATG | 2 cut(s) | 533, 760 |
| FaiI | YATR | 3 cut(s) | 155, 531, 758 |
| FaqI | GGGAC | 2 cut(s) | 67, 620 |
| FatI | CATG | 2 cut(s) | 529, 756 |
| FauI | CCCGC | 8 cut(s) | 43, 46, 151, 242, 334, 564, 586, 762 |
| FblI | GTMKAC | 1 cut(s) | 470 |
| FriOI | GRGCYC | 1 cut(s) | 579 |
| FspBI | CTAG | 1 cut(s) | 66 |
| GlaI | GCGC | 3 cut(s) | 78, 96, 134 |
| GsaI | CCCAGC | 1 cut(s) | 440 |
| GsuI | CTGGAG | 2 cut(s) | 222, 767 |
| HaeII | RGCGCY | 2 cut(s) | 80, 98 |
| HaeIII | GGCC | 5 cut(s) | 281, 597, 620, 662, 761 |
| HapII | CCGG | 3 cut(s) | 57, 98, 276 |
| HgaI | GACGC | 3 cut(s) | 537, 657, 689 |
| HhaI | GCGC | 3 cut(s) | 79, 97, 135 |
| Hin1I | GRCGYC | 3 cut(s) | 77, 548, 681 |
| Hin1II | CATG | 2 cut(s) | 533, 760 |
| Hin6I | GCGC | 3 cut(s) | 77, 95, 133 |
| HinP1I | GCGC | 3 cut(s) | 77, 95, 133 |
| HincII | GTYRAC | 2 cut(s) | 236, 471 |
| HindII | GTYRAC | 2 cut(s) | 236, 471 |
| HinfI | GANTC | 3 cut(s) | 242, 365, 485 |
| HpaII | CCGG | 3 cut(s) | 57, 98, 276 |
| HphI | GGTGA | 4 cut(s) | 38, 142, 413, 413 |
| Hpy166II | GTNNAC | 3 cut(s) | 236, 404, 471 |
| Hpy188I | TCNGA | 2 cut(s) | 84, 603 |
| Hpy8I | GTNNAC | 3 cut(s) | 236, 404, 471 |
| Hpy99I | CGWCG | 5 cut(s) | 178, 401, 518, 521, 651 |
| HpyAV | CCTTC | 3 cut(s) | 502, 608, 610 |
| HpyCH4III | ACNGT | 2 cut(s) | 401, 735 |
| HpyCH4IV | ACGT | 2 cut(s) | 333, 513 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 47, 66, 115, 191, 335, 380, 680, 721, 786 |
| HpyF3I | CTNAG | 3 cut(s) | 219, 318, 578 |
| HpySE526I | ACGT | 2 cut(s) | 333, 513 |
| Hsp92I | GRCGYC | 3 cut(s) | 77, 548, 681 |
| Hsp92II | CATG | 2 cut(s) | 533, 760 |
| HspAI | GCGC | 3 cut(s) | 77, 95, 133 |
| KasI | GGCGCC | 1 cut(s) | 76 |
| KroI | GCCGGC | 1 cut(s) | 97 |
| KroNI | GCCGGC | 1 cut(s) | 99 |
| Kzo9I | GATC | 1 cut(s) | 463 |
| LmnI | GCTCC | 6 cut(s) | 166, 316, 328, 574, 721, 748 |
| Lsp1109I | GCAGC | 2 cut(s) | 184, 301 |
| LweI | GCATC | 1 cut(s) | 661 |
| MaeI | CTAG | 1 cut(s) | 66 |
| MaeII | ACGT | 2 cut(s) | 333, 513 |
| MaeIII | GTNAC | 2 cut(s) | 148, 271 |
| MalI | GATC | 1 cut(s) | 465 |
| MbiI | CCGCTC | 5 cut(s) | 357, 433, 571, 712, 724 |
| MboI | GATC | 1 cut(s) | 463 |
| MboII | GAAGA | 4 cut(s) | 133, 266, 272, 307 |
| MhlI | GDGCHC | 2 cut(s) | 513, 579 |
| Mly113I | GGCGCC | 1 cut(s) | 77 |
| MlyI | GAGTC | 2 cut(s) | 236, 359 |
| MmeI | TCCRAC | 1 cut(s) | 144 |
| MreI | CGCCGGCG | 1 cut(s) | 97 |
| MroNI | GCCGGC | 1 cut(s) | 97 |
| MslI | CAYNNNNRTG | 2 cut(s) | 21, 669 |
| MspA1I | CMGCKG | 2 cut(s) | 197, 329 |
| MspI | CCGG | 3 cut(s) | 57, 98, 276 |
| MspR9I | CCNGG | 4 cut(s) | 277, 542, 563, 623 |
| MvaI | CCWGG | 3 cut(s) | 542, 563, 623 |
| MvnI | CGCG | 1 cut(s) | 211 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 47, 66, 115, 191, 335, 380, 680, 721, 786 |
| NaeI | GCCGGC | 1 cut(s) | 99 |
| NarI | GGCGCC | 1 cut(s) | 77 |
| NciI | CCSGG | 1 cut(s) | 277 |
| NdeII | GATC | 1 cut(s) | 463 |
| NgoMIV | GCCGGC | 1 cut(s) | 97 |
| NlaIII | CATG | 2 cut(s) | 533, 760 |
| NlaIV | GGNNCC | 8 cut(s) | 55, 78, 117, 168, 280, 312, 324, 773 |
| NmeAIII | GCCGAG | 1 cut(s) | 409 |
| NmuCI | GTSAC | 1 cut(s) | 148 |
| OliI | CACNNNNGTG | 1 cut(s) | 21 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 182, 350 |
| PdiI | GCCGGC | 1 cut(s) | 99 |
| PfeI | GAWTC | 1 cut(s) | 485 |
| PleI | GAGTC | 2 cut(s) | 236, 359 |
| PluTI | GGCGCC | 1 cut(s) | 80 |
| PpsI | GAGTC | 2 cut(s) | 236, 359 |
| PshAI | GACNNNNGTC | 1 cut(s) | 476 |
| Psp124BI | GAGCTC | 1 cut(s) | 579 |
| Psp6I | CCWGG | 3 cut(s) | 540, 561, 621 |
| PspEI | GGTNACC | 1 cut(s) | 271 |
| PspFI | CCCAGC | 1 cut(s) | 436 |
| PspGI | CCWGG | 3 cut(s) | 540, 561, 621 |
| PspN4I | GGNNCC | 8 cut(s) | 55, 78, 117, 168, 280, 312, 324, 773 |
| PspPI | GGNCC | 8 cut(s) | 54, 213, 279, 595, 619, 661, 760, 772 |
| PstNI | CAGNNNCTG | 1 cut(s) | 562 |
| RsaI | GTAC | 2 cut(s) | 208, 352 |
| RsaNI | GTAC | 2 cut(s) | 207, 351 |
| RseI | CAYNNNNRTG | 2 cut(s) | 21, 669 |
| SacI | GAGCTC | 1 cut(s) | 579 |
| SalI | GTCGAC | 1 cut(s) | 469 |
| Sau3AI | GATC | 1 cut(s) | 463 |
| Sau96I | GGNCC | 8 cut(s) | 54, 213, 279, 595, 619, 661, 760, 772 |
| SchI | GAGTC | 2 cut(s) | 236, 359 |
| ScrFI | CCNGG | 4 cut(s) | 277, 542, 563, 623 |
| SduI | GDGCHC | 2 cut(s) | 513, 579 |
| SfaNI | GCATC | 1 cut(s) | 661 |
| SfoI | GGCGCC | 1 cut(s) | 78 |
| SgrAI | CRCCGGYG | 1 cut(s) | 97 |
| SinI | GGWCC | 3 cut(s) | 54, 213, 772 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 21, 669 |
| SspDI | GGCGCC | 1 cut(s) | 76 |
| SspMI | CTAG | 1 cut(s) | 66 |
| SstI | GAGCTC | 1 cut(s) | 579 |
| StyD4I | CCNGG | 4 cut(s) | 275, 540, 561, 621 |
| StyI | CCWWGG | 1 cut(s) | 19 |
| TaaI | ACNGT | 2 cut(s) | 401, 735 |
| TaiI | ACGT | 2 cut(s) | 336, 516 |
| TaqI | TCGA | 2 cut(s) | 470, 642 |
| TaqII | GACCGA | 1 cut(s) | 456 |
| TfiI | GAWTC | 1 cut(s) | 485 |
| TscAI | CASTG | 1 cut(s) | 671 |
| TseFI | GTSAC | 1 cut(s) | 148 |
| TseI | GCWGC | 2 cut(s) | 197, 289 |
| Tsp45I | GTSAC | 1 cut(s) | 148 |
| TspGWI | ACGGA | 1 cut(s) | 155 |
| TspRI | CASTG | 1 cut(s) | 671 |
| VpaK11BI | GGWCC | 3 cut(s) | 54, 213, 772 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 17, 160 |
| XmiI | GTMKAC | 1 cut(s) | 470 |
| XspI | CTAG | 1 cut(s) | 66 |