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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 166, 175, 200 |
| AccBSI | CCGCTC | 1 cut(s) | 730 |
| AccII | CGCG | 1 cut(s) | 693 |
| AclWI | GGATC | 1 cut(s) | 786 |
| AcoI | YGGCCR | 1 cut(s) | 708 |
| AcsI | RAATTY | 1 cut(s) | 392 |
| AcuI | CTGAAG | 2 cut(s) | 722, 794 |
| AcyI | GRCGYC | 2 cut(s) | 176, 655 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 86, 664, 717, 757 |
| AgsI | TTSAA | 4 cut(s) | 488, 535, 619, 650 |
| AjnI | CCWGG | 3 cut(s) | 45, 113, 750 |
| AleI | CACNNNNGTG | 1 cut(s) | 209 |
| AluBI | AGCT | 5 cut(s) | 98, 583, 637, 767, 784 |
| AluI | AGCT | 5 cut(s) | 98, 583, 637, 767, 784 |
| Alw26I | GTCTC | 1 cut(s) | 608 |
| AlwI | GGATC | 1 cut(s) | 786 |
| AoxI | GGCC | 6 cut(s) | 56, 77, 146, 288, 472, 708 |
| ApaI | GGGCCC | 1 cut(s) | 150 |
| ApeKI | GCWGC | 5 cut(s) | 7, 98, 139, 232, 551 |
| ApoI | RAATTY | 1 cut(s) | 392 |
| AspLEI | GCGC | 1 cut(s) | 178 |
| AspS9I | GGNCC | 6 cut(s) | 77, 117, 146, 147, 288, 473 |
| AsuC2I | CCSGG | 1 cut(s) | 60 |
| AsuHPI | GGTGA | 1 cut(s) | 340 |
| AsuII | TTCGAA | 1 cut(s) | 69 |
| AvaII | GGWCC | 1 cut(s) | 117 |
| BaeGI | GKGCMC | 1 cut(s) | 150 |
| BanI | GGYRCC | 3 cut(s) | 166, 175, 200 |
| BanII | GRGCYC | 1 cut(s) | 150 |
| BbvCI | CCTCAGC | 1 cut(s) | 584 |
| BbvI | GCAGC | 4 cut(s) | 85, 151, 244, 538 |
| BccI | CCATC | 4 cut(s) | 290, 435, 455, 604 |
| BceAI | ACGGC | 2 cut(s) | 163, 695 |
| BciT130I | CCWGG | 3 cut(s) | 47, 115, 752 |
| BcnI | CCSGG | 1 cut(s) | 60 |
| BcoDI | GTCTC | 1 cut(s) | 608 |
| BfaI | CTAG | 2 cut(s) | 368, 683 |
| BfmI | CTRYAG | 1 cut(s) | 218 |
| BfoI | RGCGCY | 1 cut(s) | 179 |
| Bme1390I | CCNGG | 4 cut(s) | 47, 60, 115, 752 |
| Bme18I | GGWCC | 1 cut(s) | 117 |
| BmgT120I | GGNCC | 6 cut(s) | 77, 117, 146, 147, 288, 473 |
| BmiI | GGNNCC | 7 cut(s) | 92, 148, 149, 168, 177, 202, 289 |
| BmrFI | CCNGG | 4 cut(s) | 47, 60, 115, 752 |
| BmrI | ACTGGG | 1 cut(s) | 622 |
| BmsI | GCATC | 3 cut(s) | 613, 667, 676 |
| BmuI | ACTGGG | 1 cut(s) | 622 |
| BpmI | CTGGAG | 2 cut(s) | 590, 773 |
| Bpu10I | CCTNAGC | 1 cut(s) | 584 |
| Bpu14I | TTCGAA | 1 cut(s) | 69 |
| BpuMI | CCSGG | 1 cut(s) | 60 |
| BsaHI | GRCGYC | 2 cut(s) | 176, 655 |
| BsaI | GGTCTC | 1 cut(s) | 608 |
| BsaJI | CCNNGG | 3 cut(s) | 566, 663, 691 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 86, 664, 717, 757 |
| Bse118I | RCCGGY | 2 cut(s) | 325, 380 |
| Bse1I | ACTGG | 1 cut(s) | 628 |
| BseBI | CCWGG | 3 cut(s) | 47, 115, 752 |
| BseDI | CCNNGG | 3 cut(s) | 566, 663, 691 |
| BseGI | GGATG | 1 cut(s) | 628 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 86, 664, 717, 757 |
| BseMII | CTCAG | 2 cut(s) | 405, 575 |
| BseNI | ACTGG | 1 cut(s) | 628 |
| BseRI | GAGGAG | 3 cut(s) | 266, 269, 605 |
| BseSI | GKGCMC | 1 cut(s) | 150 |
| BseXI | GCAGC | 4 cut(s) | 85, 151, 244, 538 |
| BseYI | CCCAGC | 3 cut(s) | 135, 344, 442 |
| Bsh1236I | CGCG | 1 cut(s) | 693 |
| Bsh1285I | CGRYCG | 1 cut(s) | 480 |
| BshFI | GGCC | 6 cut(s) | 58, 79, 148, 290, 474, 710 |
| BshNI | GGYRCC | 3 cut(s) | 166, 175, 200 |
| BsiEI | CGRYCG | 1 cut(s) | 480 |
| BsiSI | CCGG | 3 cut(s) | 59, 326, 381 |
| BslFI | GGGAC | 1 cut(s) | 478 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 86, 664, 717, 757 |
| BsmAI | GTCTC | 1 cut(s) | 608 |
| BsmFI | GGGAC | 1 cut(s) | 478 |
| BsnI | GGCC | 6 cut(s) | 58, 79, 148, 290, 474, 710 |
| Bso31I | GGTCTC | 1 cut(s) | 608 |
| Bsp119I | TTCGAA | 1 cut(s) | 69 |
| Bsp120I | GGGCCC | 1 cut(s) | 146 |
| Bsp1286I | GDGCHC | 1 cut(s) | 150 |
| Bsp143I | GATC | 2 cut(s) | 594, 778 |
| BspANI | GGCC | 6 cut(s) | 58, 79, 148, 290, 474, 710 |
| BspCNI | CTCAG | 2 cut(s) | 406, 576 |
| BspFNI | CGCG | 1 cut(s) | 693 |
| BspLI | GGNNCC | 7 cut(s) | 92, 148, 149, 168, 177, 202, 289 |
| BspMAI | CTGCAG | 1 cut(s) | 222 |
| BspPI | GGATC | 1 cut(s) | 786 |
| BspT104I | TTCGAA | 1 cut(s) | 69 |
| BspT107I | GGYRCC | 3 cut(s) | 166, 175, 200 |
| BspTNI | GGTCTC | 1 cut(s) | 608 |
| BsrBI | CCGCTC | 1 cut(s) | 730 |
| BsrFI | RCCGGY | 2 cut(s) | 325, 380 |
| BsrI | ACTGG | 1 cut(s) | 628 |
| BssAI | RCCGGY | 2 cut(s) | 325, 380 |
| BssECI | CCNNGG | 3 cut(s) | 566, 663, 691 |
| BssMI | GATC | 2 cut(s) | 594, 778 |
| BssNI | GRCGYC | 2 cut(s) | 176, 655 |
| BssT1I | CCWWGG | 1 cut(s) | 663 |
| Bst2UI | CCWGG | 3 cut(s) | 47, 115, 752 |
| Bst4CI | ACNGT | 4 cut(s) | 334, 469, 481, 492 |
| Bst6I | CTCTTC | 1 cut(s) | 296 |
| BstACI | GRCGYC | 2 cut(s) | 176, 655 |
| BstBI | TTCGAA | 1 cut(s) | 69 |
| BstC8I | GCNNGC | 5 cut(s) | 174, 382, 563, 635, 691 |
| BstDEI | CTNAG | 2 cut(s) | 414, 584 |
| BstDSI | CCRYGG | 1 cut(s) | 691 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 662, 755 |
| BstF5I | GGATG | 1 cut(s) | 628 |
| BstFNI | CGCG | 1 cut(s) | 693 |
| BstH2I | RGCGCY | 1 cut(s) | 179 |
| BstHHI | GCGC | 1 cut(s) | 178 |
| BstKTI | GATC | 2 cut(s) | 597, 781 |
| BstMAI | GTCTC | 1 cut(s) | 608 |
| BstMBI | GATC | 2 cut(s) | 594, 778 |
| BstMCI | CGRYCG | 1 cut(s) | 480 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 13, 145, 175, 200, 226, 364, 386, 686, 727 |
| BstNI | CCWGG | 3 cut(s) | 47, 115, 752 |
| BstSCI | CCNGG | 4 cut(s) | 45, 58, 113, 750 |
| BstSFI | CTRYAG | 1 cut(s) | 218 |
| BstSLI | GKGCMC | 1 cut(s) | 150 |
| BstUI | CGCG | 1 cut(s) | 693 |
| BstV1I | GCAGC | 4 cut(s) | 85, 151, 244, 538 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 211 |
| BsuRI | GGCC | 6 cut(s) | 58, 79, 148, 290, 474, 710 |
| BtgI | CCRYGG | 1 cut(s) | 691 |
| BtsCI | GGATG | 1 cut(s) | 628 |
| BtsIMutI | CAGTG | 1 cut(s) | 635 |
| Cac8I | GCNNGC | 5 cut(s) | 174, 382, 563, 635, 691 |
| CfoI | GCGC | 1 cut(s) | 178 |
| Cfr10I | RCCGGY | 2 cut(s) | 325, 380 |
| Cfr13I | GGNCC | 6 cut(s) | 77, 117, 146, 147, 288, 473 |
| Cfr42I | CCGCGG | 1 cut(s) | 694 |
| CseI | GACGC | 2 cut(s) | 543, 663 |
| CviAII | CATG | 1 cut(s) | 13 |
| DdeI | CTNAG | 2 cut(s) | 414, 584 |
| DinI | GGCGCC | 1 cut(s) | 177 |
| DpnI | GATC | 2 cut(s) | 596, 780 |
| DpnII | GATC | 2 cut(s) | 594, 778 |
| EaeI | YGGCCR | 1 cut(s) | 708 |
| Eam1104I | CTCTTC | 1 cut(s) | 296 |
| EarI | CTCTTC | 1 cut(s) | 296 |
| EciI | GGCGGA | 3 cut(s) | 65, 312, 683 |
| Eco130I | CCWWGG | 1 cut(s) | 663 |
| Eco24I | GRGCYC | 1 cut(s) | 150 |
| Eco31I | GGTCTC | 1 cut(s) | 608 |
| Eco47I | GGWCC | 1 cut(s) | 117 |
| Eco57I | CTGAAG | 2 cut(s) | 722, 794 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 662, 755 |
| EcoO109I | RGGNCCY | 4 cut(s) | 77, 146, 147, 288 |
| EcoRI | GAATTC | 1 cut(s) | 392 |
| EcoRII | CCWGG | 3 cut(s) | 45, 113, 750 |
| EcoT14I | CCWWGG | 1 cut(s) | 663 |
| EcoT38I | GRGCYC | 1 cut(s) | 150 |
| EgeI | GGCGCC | 1 cut(s) | 177 |
| EheI | GGCGCC | 1 cut(s) | 177 |
| ErhI | CCWWGG | 1 cut(s) | 663 |
| FaeI | CATG | 1 cut(s) | 16 |
| FaiI | YATR | 5 cut(s) | 14, 273, 387, 745, 764 |
| FaqI | GGGAC | 1 cut(s) | 478 |
| FatI | CATG | 1 cut(s) | 12 |
| FauI | CCCGC | 2 cut(s) | 80, 698 |
| FokI | GGATG | 1 cut(s) | 635 |
| FriOI | GRGCYC | 1 cut(s) | 150 |
| FspBI | CTAG | 2 cut(s) | 368, 683 |
| GlaI | GCGC | 1 cut(s) | 177 |
| GsaI | CCCAGC | 3 cut(s) | 139, 348, 446 |
| GsuI | CTGGAG | 2 cut(s) | 590, 773 |
| HaeII | RGCGCY | 1 cut(s) | 179 |
| HaeIII | GGCC | 6 cut(s) | 58, 79, 148, 290, 474, 710 |
| HapII | CCGG | 3 cut(s) | 59, 326, 381 |
| HgaI | GACGC | 2 cut(s) | 543, 663 |
| HhaI | GCGC | 1 cut(s) | 178 |
| Hin1I | GRCGYC | 2 cut(s) | 176, 655 |
| Hin1II | CATG | 1 cut(s) | 16 |
| Hin6I | GCGC | 1 cut(s) | 176 |
| HinP1I | GCGC | 1 cut(s) | 176 |
| HinfI | GANTC | 3 cut(s) | 317, 371, 404 |
| HpaII | CCGG | 3 cut(s) | 59, 326, 381 |
| HphI | GGTGA | 1 cut(s) | 340 |
| Hpy188I | TCNGA | 2 cut(s) | 409, 570 |
| Hpy188III | TCNNGA | 2 cut(s) | 397, 607 |
| Hpy99I | CGWCG | 3 cut(s) | 184, 530, 657 |
| HpyAV | CCTTC | 3 cut(s) | 613, 697, 769 |
| HpyCH4III | ACNGT | 4 cut(s) | 334, 469, 481, 492 |
| HpyCH4IV | ACGT | 1 cut(s) | 723 |
| HpyCH4V | TGCA | 3 cut(s) | 220, 358, 633 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 13, 145, 175, 200, 226, 364, 386, 686, 727 |
| HpyF3I | CTNAG | 2 cut(s) | 414, 584 |
| HpySE526I | ACGT | 1 cut(s) | 723 |
| Hsp92I | GRCGYC | 2 cut(s) | 176, 655 |
| Hsp92II | CATG | 1 cut(s) | 16 |
| HspAI | GCGC | 1 cut(s) | 176 |
| KasI | GGCGCC | 1 cut(s) | 175 |
| KroI | GCCGGC | 1 cut(s) | 380 |
| KroNI | GCCGGC | 1 cut(s) | 382 |
| KspI | CCGCGG | 1 cut(s) | 694 |
| Kzo9I | GATC | 2 cut(s) | 594, 778 |
| LmnI | GCTCC | 1 cut(s) | 754 |
| Lsp1109I | GCAGC | 4 cut(s) | 85, 151, 244, 538 |
| LweI | GCATC | 3 cut(s) | 613, 667, 676 |
| MaeI | CTAG | 2 cut(s) | 368, 683 |
| MaeII | ACGT | 1 cut(s) | 723 |
| MaeIII | GTNAC | 3 cut(s) | 103, 277, 328 |
| MalI | GATC | 2 cut(s) | 596, 780 |
| MbiI | CCGCTC | 1 cut(s) | 730 |
| MboI | GATC | 2 cut(s) | 594, 778 |
| MboII | GAAGA | 2 cut(s) | 313, 415 |
| MhlI | GDGCHC | 1 cut(s) | 150 |
| MluCI | AATT | 1 cut(s) | 392 |
| Mly113I | GGCGCC | 1 cut(s) | 176 |
| MlyI | GAGTC | 3 cut(s) | 311, 365, 413 |
| MroNI | GCCGGC | 1 cut(s) | 380 |
| MslI | CAYNNNNRTG | 2 cut(s) | 209, 432 |
| MspA1I | CMGCKG | 4 cut(s) | 197, 583, 693, 784 |
| MspI | CCGG | 3 cut(s) | 59, 326, 381 |
| MspR9I | CCNGG | 4 cut(s) | 47, 60, 115, 752 |
| MvaI | CCWGG | 3 cut(s) | 47, 115, 752 |
| MvnI | CGCG | 1 cut(s) | 693 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 13, 145, 175, 200, 226, 364, 386, 686, 727 |
| NaeI | GCCGGC | 1 cut(s) | 382 |
| NarI | GGCGCC | 1 cut(s) | 176 |
| NciI | CCSGG | 1 cut(s) | 60 |
| NdeII | GATC | 2 cut(s) | 594, 778 |
| NgoMIV | GCCGGC | 1 cut(s) | 380 |
| NlaIII | CATG | 1 cut(s) | 16 |
| NlaIV | GGNNCC | 7 cut(s) | 92, 148, 149, 168, 177, 202, 289 |
| NmuCI | GTSAC | 1 cut(s) | 328 |
| NspV | TTCGAA | 1 cut(s) | 69 |
| OliI | CACNNNNGTG | 1 cut(s) | 209 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 477, 534 |
| PdiI | GCCGGC | 1 cut(s) | 382 |
| PflFI | GACNNNGTC | 1 cut(s) | 403 |
| PleI | GAGTC | 3 cut(s) | 311, 365, 412 |
| PluTI | GGCGCC | 1 cut(s) | 179 |
| PpsI | GAGTC | 3 cut(s) | 311, 365, 412 |
| Psp6I | CCWGG | 3 cut(s) | 45, 113, 750 |
| PspFI | CCCAGC | 3 cut(s) | 135, 344, 442 |
| PspGI | CCWGG | 3 cut(s) | 45, 113, 750 |
| PspN4I | GGNNCC | 7 cut(s) | 92, 148, 149, 168, 177, 202, 289 |
| PspOMI | GGGCCC | 1 cut(s) | 146 |
| PspPI | GGNCC | 6 cut(s) | 77, 117, 146, 147, 288, 473 |
| PstI | CTGCAG | 1 cut(s) | 222 |
| PsyI | GACNNNGTC | 1 cut(s) | 403 |
| PvuII | CAGCTG | 2 cut(s) | 583, 784 |
| RseI | CAYNNNNRTG | 2 cut(s) | 209, 432 |
| SacII | CCGCGG | 1 cut(s) | 694 |
| Sau3AI | GATC | 2 cut(s) | 594, 778 |
| Sau96I | GGNCC | 6 cut(s) | 77, 117, 146, 147, 288, 473 |
| SchI | GAGTC | 3 cut(s) | 311, 365, 413 |
| ScrFI | CCNGG | 4 cut(s) | 47, 60, 115, 752 |
| SduI | GDGCHC | 1 cut(s) | 150 |
| SfaNI | GCATC | 3 cut(s) | 613, 667, 676 |
| SfcI | CTRYAG | 1 cut(s) | 218 |
| SfoI | GGCGCC | 1 cut(s) | 177 |
| Sfr303I | CCGCGG | 1 cut(s) | 694 |
| SfuI | TTCGAA | 1 cut(s) | 69 |
| SgrAI | CRCCGGYG | 1 cut(s) | 325 |
| SgrBI | CCGCGG | 1 cut(s) | 694 |
| SinI | GGWCC | 1 cut(s) | 117 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 209, 432 |
| Sse9I | AATT | 1 cut(s) | 392 |
| SspDI | GGCGCC | 1 cut(s) | 175 |
| SspMI | CTAG | 2 cut(s) | 368, 683 |
| StyD4I | CCNGG | 4 cut(s) | 45, 58, 113, 750 |
| StyI | CCWWGG | 1 cut(s) | 663 |
| TaaI | ACNGT | 4 cut(s) | 334, 469, 481, 492 |
| TaiI | ACGT | 1 cut(s) | 726 |
| TaqI | TCGA | 2 cut(s) | 69, 182 |
| TaqII | GACCGA | 1 cut(s) | 416 |
| TasI | AATT | 1 cut(s) | 392 |
| TauI | GCSGC | 6 cut(s) | 134, 172, 197, 232, 696, 721 |
| TscAI | CASTG | 1 cut(s) | 635 |
| TseFI | GTSAC | 1 cut(s) | 328 |
| TseI | GCWGC | 5 cut(s) | 7, 98, 139, 232, 551 |
| Tsp45I | GTSAC | 1 cut(s) | 328 |
| TspGWI | ACGGA | 1 cut(s) | 514 |
| TspRI | CASTG | 1 cut(s) | 635 |
| Tth111I | GACNNNGTC | 1 cut(s) | 403 |
| VpaK11BI | GGWCC | 1 cut(s) | 117 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 662, 755 |
| XapI | RAATTY | 1 cut(s) | 392 |
| XspI | CTAG | 2 cut(s) | 368, 683 |