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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 14, 340 |
| AccII | CGCG | 1 cut(s) | 146 |
| AciI | CCGC | 8 cut(s) | 12, 144, 216, 340, 404, 511, 521, 575 |
| AclWI | GGATC | 3 cut(s) | 414, 477, 496 |
| AcoI | YGGCCR | 3 cut(s) | 82, 86, 522 |
| AcuI | CTGAAG | 2 cut(s) | 247, 485 |
| AcyI | GRCGYC | 1 cut(s) | 317 |
| AfaI | GTAC | 1 cut(s) | 149 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 18, 58, 91, 105, 175, 331, 511, 592 |
| AgsI | TTSAA | 1 cut(s) | 616 |
| AjnI | CCWGG | 1 cut(s) | 79 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 458, 490 |
| AleI | CACNNNNGTG | 1 cut(s) | 602 |
| AluBI | AGCT | 5 cut(s) | 267, 346, 379, 400, 458 |
| AluI | AGCT | 5 cut(s) | 267, 346, 379, 400, 458 |
| Alw21I | GWGCWC | 1 cut(s) | 237 |
| Alw26I | GTCTC | 2 cut(s) | 296, 371 |
| Alw44I | GTGCAC | 1 cut(s) | 233 |
| AlwI | GGATC | 3 cut(s) | 414, 477, 496 |
| Ama87I | CYCGRG | 3 cut(s) | 206, 330, 416 |
| AoxI | GGCC | 5 cut(s) | 82, 86, 387, 522, 594 |
| ApaLI | GTGCAC | 1 cut(s) | 233 |
| ApeKI | GCWGC | 3 cut(s) | 343, 479, 508 |
| AspS9I | GGNCC | 1 cut(s) | 412 |
| AsuC2I | CCSGG | 2 cut(s) | 331, 332 |
| AsuHPI | GGTGA | 5 cut(s) | 41, 61, 88, 550, 566 |
| AvaI | CYCGRG | 3 cut(s) | 206, 330, 416 |
| AvaII | GGWCC | 1 cut(s) | 412 |
| BaeGI | GKGCMC | 1 cut(s) | 237 |
| Bbv12I | GWGCWC | 1 cut(s) | 237 |
| BbvCI | CCTCAGC | 1 cut(s) | 347 |
| BbvI | GCAGC | 3 cut(s) | 355, 491, 520 |
| BceAI | ACGGC | 1 cut(s) | 587 |
| BciT130I | CCWGG | 1 cut(s) | 81 |
| BclI | TGATCA | 1 cut(s) | 250 |
| BcnI | CCSGG | 2 cut(s) | 331, 332 |
| BcoDI | GTCTC | 2 cut(s) | 296, 371 |
| BfaI | CTAG | 2 cut(s) | 132, 221 |
| BfmI | CTRYAG | 1 cut(s) | 506 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 608 |
| BisI | GCNGC | 5 cut(s) | 341, 344, 480, 509, 522 |
| BlpI | GCTNAGC | 1 cut(s) | 268 |
| BlsI | GCNGC | 5 cut(s) | 342, 345, 481, 510, 523 |
| Bme1390I | CCNGG | 3 cut(s) | 81, 331, 332 |
| Bme18I | GGWCC | 1 cut(s) | 412 |
| BmeT110I | CYCGRG | 3 cut(s) | 206, 330, 416 |
| BmgT120I | GGNCC | 1 cut(s) | 412 |
| BmiI | GGNNCC | 2 cut(s) | 413, 584 |
| BmrFI | CCNGG | 3 cut(s) | 81, 331, 332 |
| BmrI | ACTGGG | 1 cut(s) | 433 |
| BmsI | GCATC | 1 cut(s) | 289 |
| BmuI | ACTGGG | 1 cut(s) | 433 |
| BpmI | CTGGAG | 1 cut(s) | 353 |
| Bpu10I | CCTNAGC | 1 cut(s) | 347 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 268 |
| BpuMI | CCSGG | 2 cut(s) | 331, 332 |
| BsaBI | GATNNNNATC | 1 cut(s) | 500 |
| BsaHI | GRCGYC | 1 cut(s) | 317 |
| BsaI | GGTCTC | 1 cut(s) | 371 |
| BsaJI | CCNNGG | 6 cut(s) | 79, 329, 330, 390, 531, 603 |
| BsaWI | WCCGGW | 3 cut(s) | 44, 71, 98 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 18, 58, 91, 105, 175, 331, 511, 592 |
| Bse118I | RCCGGY | 1 cut(s) | 84 |
| Bse1I | ACTGG | 3 cut(s) | 52, 96, 439 |
| Bse8I | GATNNNNATC | 1 cut(s) | 500 |
| BseBI | CCWGG | 1 cut(s) | 81 |
| BseDI | CCNNGG | 6 cut(s) | 79, 329, 330, 390, 531, 603 |
| BseJI | GATNNNNATC | 1 cut(s) | 500 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 18, 58, 91, 105, 175, 331, 511, 592 |
| BseMII | CTCAG | 3 cut(s) | 162, 282, 338 |
| BseNI | ACTGG | 3 cut(s) | 52, 96, 439 |
| BseRI | GAGGAG | 3 cut(s) | 368, 548, 595 |
| BseSI | GKGCMC | 1 cut(s) | 237 |
| BseXI | GCAGC | 3 cut(s) | 355, 491, 520 |
| BseYI | CCCAGC | 1 cut(s) | 379 |
| BsgI | GTGCAG | 1 cut(s) | 138 |
| Bsh1236I | CGCG | 1 cut(s) | 146 |
| BshFI | GGCC | 5 cut(s) | 84, 88, 389, 524, 596 |
| BsiHKAI | GWGCWC | 1 cut(s) | 237 |
| BsiHKCI | CYCGRG | 3 cut(s) | 206, 330, 416 |
| BsiSI | CCGG | 8 cut(s) | 45, 59, 72, 85, 99, 106, 331, 586 |
| BsiWI | CGTACG | 1 cut(s) | 147 |
| BslFI | GGGAC | 3 cut(s) | 62, 421, 425 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 18, 58, 91, 105, 175, 331, 511, 592 |
| BsmAI | GTCTC | 2 cut(s) | 296, 371 |
| BsmBI | CGTCTC | 1 cut(s) | 296 |
| BsmFI | GGGAC | 3 cut(s) | 62, 421, 425 |
| BsmI | GAATGC | 1 cut(s) | 611 |
| BsnI | GGCC | 5 cut(s) | 84, 88, 389, 524, 596 |
| Bso31I | GGTCTC | 1 cut(s) | 371 |
| BsoBI | CYCGRG | 3 cut(s) | 206, 330, 416 |
| Bsp1286I | GDGCHC | 1 cut(s) | 237 |
| Bsp143I | GATC | 5 cut(s) | 128, 250, 406, 469, 501 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 268 |
| BspACI | CCGC | 8 cut(s) | 12, 144, 216, 340, 404, 511, 521, 575 |
| BspANI | GGCC | 5 cut(s) | 84, 88, 389, 524, 596 |
| BspCNI | CTCAG | 3 cut(s) | 163, 281, 339 |
| BspFNI | CGCG | 1 cut(s) | 146 |
| BspLI | GGNNCC | 2 cut(s) | 413, 584 |
| BspMAI | CTGCAG | 1 cut(s) | 510 |
| BspPI | GGATC | 3 cut(s) | 414, 477, 496 |
| BspTNI | GGTCTC | 1 cut(s) | 371 |
| BsrBI | CCGCTC | 2 cut(s) | 14, 340 |
| BsrFI | RCCGGY | 1 cut(s) | 84 |
| BsrI | ACTGG | 3 cut(s) | 52, 96, 439 |
| BssAI | RCCGGY | 1 cut(s) | 84 |
| BssECI | CCNNGG | 6 cut(s) | 79, 329, 330, 390, 531, 603 |
| BssMI | GATC | 5 cut(s) | 128, 250, 406, 469, 501 |
| BssNI | GRCGYC | 1 cut(s) | 317 |
| BssT1I | CCWWGG | 1 cut(s) | 390 |
| Bst2UI | CCWGG | 1 cut(s) | 81 |
| Bst4CI | ACNGT | 1 cut(s) | 365 |
| Bst6I | CTCTTC | 2 cut(s) | 191, 536 |
| BstACI | GRCGYC | 1 cut(s) | 317 |
| BstC8I | GCNNGC | 3 cut(s) | 86, 326, 402 |
| BstDEI | CTNAG | 4 cut(s) | 171, 268, 310, 347 |
| BstDSI | CCRYGG | 1 cut(s) | 603 |
| BstEII | GGTNACC | 2 cut(s) | 47, 94 |
| BstFNI | CGCG | 1 cut(s) | 146 |
| BstKTI | GATC | 5 cut(s) | 131, 253, 409, 472, 504 |
| BstMAI | GTCTC | 2 cut(s) | 296, 371 |
| BstMBI | GATC | 5 cut(s) | 128, 250, 406, 469, 501 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 608 |
| BstNI | CCWGG | 1 cut(s) | 81 |
| BstPI | GGTNACC | 2 cut(s) | 47, 94 |
| BstSCI | CCNGG | 3 cut(s) | 79, 329, 330 |
| BstSFI | CTRYAG | 1 cut(s) | 506 |
| BstSLI | GKGCMC | 1 cut(s) | 237 |
| BstUI | CGCG | 1 cut(s) | 146 |
| BstV1I | GCAGC | 3 cut(s) | 355, 491, 520 |
| BstX2I | RGATCY | 1 cut(s) | 501 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 604 |
| BstYI | RGATCY | 1 cut(s) | 501 |
| BsuRI | GGCC | 5 cut(s) | 84, 88, 389, 524, 596 |
| BtgI | CCRYGG | 1 cut(s) | 603 |
| BtsIMutI | CAGTG | 1 cut(s) | 89 |
| Cac8I | GCNNGC | 3 cut(s) | 86, 326, 402 |
| Cfr10I | RCCGGY | 1 cut(s) | 84 |
| Cfr13I | GGNCC | 1 cut(s) | 412 |
| Cfr9I | CCCGGG | 1 cut(s) | 330 |
| CseI | GACGC | 1 cut(s) | 306 |
| Csp6I | GTAC | 1 cut(s) | 148 |
| CviAII | CATG | 2 cut(s) | 299, 431 |
| CviQI | GTAC | 1 cut(s) | 148 |
| DdeI | CTNAG | 4 cut(s) | 171, 268, 310, 347 |
| DpnI | GATC | 5 cut(s) | 130, 252, 408, 471, 503 |
| DpnII | GATC | 5 cut(s) | 128, 250, 406, 469, 501 |
| EaeI | YGGCCR | 3 cut(s) | 82, 86, 522 |
| Eam1104I | CTCTTC | 2 cut(s) | 191, 536 |
| EarI | CTCTTC | 2 cut(s) | 191, 536 |
| EciI | GGCGGA | 2 cut(s) | 231, 419 |
| Eco130I | CCWWGG | 1 cut(s) | 390 |
| Eco31I | GGTCTC | 1 cut(s) | 371 |
| Eco47I | GGWCC | 1 cut(s) | 412 |
| Eco57I | CTGAAG | 2 cut(s) | 247, 485 |
| Eco88I | CYCGRG | 3 cut(s) | 206, 330, 416 |
| Eco91I | GGTNACC | 2 cut(s) | 47, 94 |
| EcoO109I | RGGNCCY | 1 cut(s) | 412 |
| EcoO65I | GGTNACC | 2 cut(s) | 47, 94 |
| EcoRII | CCWGG | 1 cut(s) | 79 |
| EcoT14I | CCWWGG | 1 cut(s) | 390 |
| ErhI | CCWWGG | 1 cut(s) | 390 |
| Esp3I | CGTCTC | 1 cut(s) | 296 |
| FaeI | CATG | 2 cut(s) | 302, 434 |
| FaiI | YATR | 3 cut(s) | 300, 432, 455 |
| FaqI | GGGAC | 3 cut(s) | 62, 421, 425 |
| FatI | CATG | 2 cut(s) | 298, 430 |
| FauI | CCCGC | 1 cut(s) | 504 |
| FbaI | TGATCA | 1 cut(s) | 250 |
| Fnu4HI | GCNGC | 5 cut(s) | 341, 344, 480, 509, 522 |
| FseI | GGCCGGCC | 1 cut(s) | 88 |
| Fsp4HI | GCNGC | 5 cut(s) | 341, 344, 480, 509, 522 |
| FspBI | CTAG | 2 cut(s) | 132, 221 |
| GluI | GCNGC | 5 cut(s) | 341, 344, 480, 509, 522 |
| GsaI | CCCAGC | 1 cut(s) | 383 |
| GsuI | CTGGAG | 1 cut(s) | 353 |
| HaeIII | GGCC | 5 cut(s) | 84, 88, 389, 524, 596 |
| HapII | CCGG | 8 cut(s) | 45, 59, 72, 85, 99, 106, 331, 586 |
| HgaI | GACGC | 1 cut(s) | 306 |
| Hin1I | GRCGYC | 1 cut(s) | 317 |
| Hin1II | CATG | 2 cut(s) | 302, 434 |
| HinfI | GANTC | 8 cut(s) | 8, 34, 41, 62, 75, 102, 135, 515 |
| HpaII | CCGG | 8 cut(s) | 45, 59, 72, 85, 99, 106, 331, 586 |
| HphI | GGTGA | 5 cut(s) | 41, 61, 88, 550, 566 |
| Hpy166II | GTNNAC | 1 cut(s) | 235 |
| Hpy188I | TCNGA | 1 cut(s) | 532 |
| Hpy188III | TCNNGA | 6 cut(s) | 38, 132, 160, 370, 410, 490 |
| Hpy8I | GTNNAC | 1 cut(s) | 235 |
| Hpy99I | CGWCG | 1 cut(s) | 322 |
| HpyAV | CCTTC | 3 cut(s) | 271, 283, 460 |
| HpyCH4III | ACNGT | 1 cut(s) | 365 |
| HpyCH4IV | ACGT | 1 cut(s) | 305 |
| HpyCH4V | TGCA | 3 cut(s) | 119, 235, 508 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 608 |
| HpyF3I | CTNAG | 4 cut(s) | 171, 268, 310, 347 |
| HpySE526I | ACGT | 1 cut(s) | 305 |
| Hsp92I | GRCGYC | 1 cut(s) | 317 |
| Hsp92II | CATG | 2 cut(s) | 302, 434 |
| KroI | GCCGGC | 1 cut(s) | 84 |
| KroNI | GCCGGC | 1 cut(s) | 86 |
| Ksp22I | TGATCA | 1 cut(s) | 250 |
| Kzo9I | GATC | 5 cut(s) | 128, 250, 406, 469, 501 |
| LmnI | GCTCC | 3 cut(s) | 376, 445, 582 |
| Lsp1109I | GCAGC | 3 cut(s) | 355, 491, 520 |
| LweI | GCATC | 1 cut(s) | 289 |
| MaeI | CTAG | 2 cut(s) | 132, 221 |
| MaeII | ACGT | 1 cut(s) | 305 |
| MaeIII | GTNAC | 3 cut(s) | 47, 67, 94 |
| MalI | GATC | 5 cut(s) | 130, 252, 408, 471, 503 |
| MbiI | CCGCTC | 2 cut(s) | 14, 340 |
| MboI | GATC | 5 cut(s) | 128, 250, 406, 469, 501 |
| MboII | GAAGA | 3 cut(s) | 178, 505, 553 |
| MflI | RGATCY | 1 cut(s) | 501 |
| MhlI | GDGCHC | 1 cut(s) | 237 |
| MlyI | GAGTC | 4 cut(s) | 71, 84, 111, 129 |
| MmeI | TCCRAC | 2 cut(s) | 423, 528 |
| MroNI | GCCGGC | 1 cut(s) | 84 |
| MslI | CAYNNNNRTG | 1 cut(s) | 602 |
| MspA1I | CMGCKG | 2 cut(s) | 346, 511 |
| MspI | CCGG | 8 cut(s) | 45, 59, 72, 85, 99, 106, 331, 586 |
| MspR9I | CCNGG | 3 cut(s) | 81, 331, 332 |
| Mva1269I | GAATGC | 1 cut(s) | 611 |
| MvaI | CCWGG | 1 cut(s) | 81 |
| MvnI | CGCG | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 608 |
| NaeI | GCCGGC | 1 cut(s) | 86 |
| NciI | CCSGG | 2 cut(s) | 331, 332 |
| NdeII | GATC | 5 cut(s) | 128, 250, 406, 469, 501 |
| NgoMIV | GCCGGC | 1 cut(s) | 84 |
| NlaIII | CATG | 2 cut(s) | 302, 434 |
| NlaIV | GGNNCC | 2 cut(s) | 413, 584 |
| NmuCI | GTSAC | 3 cut(s) | 47, 67, 94 |
| OliI | CACNNNNGTG | 1 cut(s) | 602 |
| PaeR7I | CTCGAG | 1 cut(s) | 416 |
| PctI | GAATGC | 1 cut(s) | 611 |
| PdiI | GCCGGC | 1 cut(s) | 86 |
| PfeI | GAWTC | 4 cut(s) | 8, 34, 41, 515 |
| Pfl23II | CGTACG | 1 cut(s) | 147 |
| PkrI | GCNGC | 5 cut(s) | 342, 345, 481, 510, 523 |
| PleI | GAGTC | 4 cut(s) | 70, 83, 110, 129 |
| PpsI | GAGTC | 4 cut(s) | 70, 83, 110, 129 |
| PpuMI | RGGWCCY | 1 cut(s) | 412 |
| Psp5II | RGGWCCY | 1 cut(s) | 412 |
| Psp6I | CCWGG | 1 cut(s) | 79 |
| PspEI | GGTNACC | 2 cut(s) | 47, 94 |
| PspFI | CCCAGC | 1 cut(s) | 379 |
| PspGI | CCWGG | 1 cut(s) | 79 |
| PspLI | CGTACG | 1 cut(s) | 147 |
| PspN4I | GGNNCC | 2 cut(s) | 413, 584 |
| PspPI | GGNCC | 1 cut(s) | 412 |
| PspPPI | RGGWCCY | 1 cut(s) | 412 |
| PspXI | VCTCGAGB | 1 cut(s) | 416 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 140, 172 |
| PstI | CTGCAG | 1 cut(s) | 510 |
| PsuI | RGATCY | 1 cut(s) | 501 |
| PvuII | CAGCTG | 1 cut(s) | 346 |
| RigI | GGCCGGCC | 1 cut(s) | 88 |
| RsaI | GTAC | 1 cut(s) | 149 |
| RsaNI | GTAC | 1 cut(s) | 148 |
| RseI | CAYNNNNRTG | 1 cut(s) | 602 |
| SatI | GCNGC | 5 cut(s) | 341, 344, 480, 509, 522 |
| Sau3AI | GATC | 5 cut(s) | 128, 250, 406, 469, 501 |
| Sau96I | GGNCC | 1 cut(s) | 412 |
| SchI | GAGTC | 4 cut(s) | 71, 84, 111, 129 |
| ScrFI | CCNGG | 3 cut(s) | 81, 331, 332 |
| SduI | GDGCHC | 1 cut(s) | 237 |
| SfaNI | GCATC | 1 cut(s) | 289 |
| SfcI | CTRYAG | 1 cut(s) | 506 |
| Sfr274I | CTCGAG | 1 cut(s) | 416 |
| SinI | GGWCC | 1 cut(s) | 412 |
| SlaI | CTCGAG | 1 cut(s) | 416 |
| SmaI | CCCGGG | 1 cut(s) | 332 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 602 |
| SmlI | CTYRAG | 1 cut(s) | 416 |
| SmoI | CTYRAG | 1 cut(s) | 416 |
| SsiI | CCGC | 8 cut(s) | 12, 144, 216, 340, 404, 511, 521, 575 |
| SspMI | CTAG | 2 cut(s) | 132, 221 |
| StyD4I | CCNGG | 3 cut(s) | 79, 329, 330 |
| StyI | CCWWGG | 1 cut(s) | 390 |
| TaaI | ACNGT | 1 cut(s) | 365 |
| TaiI | ACGT | 1 cut(s) | 308 |
| TaqI | TCGA | 3 cut(s) | 239, 320, 417 |
| TaqII | GACCGA | 2 cut(s) | 9, 179 |
| TauI | GCSGC | 2 cut(s) | 343, 524 |
| TfiI | GAWTC | 4 cut(s) | 8, 34, 41, 515 |
| TscAI | CASTG | 1 cut(s) | 96 |
| TseFI | GTSAC | 3 cut(s) | 47, 67, 94 |
| TseI | GCWGC | 3 cut(s) | 343, 479, 508 |
| Tsp45I | GTSAC | 3 cut(s) | 47, 67, 94 |
| TspDTI | ATGAA | 1 cut(s) | 374 |
| TspGWI | ACGGA | 1 cut(s) | 605 |
| TspMI | CCCGGG | 1 cut(s) | 330 |
| TspRI | CASTG | 1 cut(s) | 96 |
| VneI | GTGCAC | 1 cut(s) | 233 |
| VpaK11BI | GGWCC | 1 cut(s) | 412 |
| XbaI | TCTAGA | 1 cut(s) | 131 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 397 |
| XhoI | CTCGAG | 1 cut(s) | 416 |
| XmaI | CCCGGG | 1 cut(s) | 330 |
| XspI | CTAG | 2 cut(s) | 132, 221 |