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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 307 |
| AccB1I | GGYRCC | 2 cut(s) | 1040, 1076 |
| AccBSI | CCGCTC | 2 cut(s) | 841, 853 |
| AccII | CGCG | 3 cut(s) | 9, 188, 414 |
| AclWI | GGATC | 2 cut(s) | 104, 117 |
| AcoI | YGGCCR | 2 cut(s) | 825, 1047 |
| AcuI | CTGAAG | 3 cut(s) | 30, 329, 607 |
| AcyI | GRCGYC | 1 cut(s) | 1041 |
| AfaI | GTAC | 1 cut(s) | 989 |
| AfeI | AGCGCT | 1 cut(s) | 93 |
| AflIII | ACRYGT | 1 cut(s) | 885 |
| AjiI | CACGTC | 1 cut(s) | 643 |
| AjnI | CCWGG | 5 cut(s) | 27, 311, 669, 738, 846 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 525, 557 |
| AluBI | AGCT | 1 cut(s) | 823 |
| AluI | AGCT | 1 cut(s) | 823 |
| Alw26I | GTCTC | 1 cut(s) | 77 |
| AlwI | GGATC | 2 cut(s) | 104, 117 |
| Aor51HI | AGCGCT | 1 cut(s) | 93 |
| ApaI | GGGCCC | 2 cut(s) | 412, 728 |
| ApeKI | GCWGC | 8 cut(s) | 121, 205, 323, 418, 655, 1028, 1063, 1066 |
| AspLEI | GCGC | 7 cut(s) | 11, 94, 188, 205, 223, 261, 1043 |
| AsuHPI | GGTGA | 6 cut(s) | 164, 202, 542, 542, 925, 941 |
| AsuNHI | GCTAGC | 1 cut(s) | 88 |
| AvaII | GGWCC | 6 cut(s) | 4, 76, 180, 309, 736, 844 |
| AxyI | CCTNAGG | 1 cut(s) | 966 |
| BaeGI | GKGCMC | 3 cut(s) | 412, 642, 728 |
| BalI | TGGCCA | 1 cut(s) | 1049 |
| BamHI | GGATCC | 1 cut(s) | 109 |
| BanI | GGYRCC | 2 cut(s) | 1040, 1076 |
| BanII | GRGCYC | 2 cut(s) | 412, 728 |
| BbsI | GAAGAC | 1 cut(s) | 71 |
| BbvI | GCAGC | 8 cut(s) | 108, 217, 310, 430, 642, 1040, 1050, 1078 |
| BccI | CCATC | 3 cut(s) | 46, 521, 1088 |
| BceAI | ACGGC | 6 cut(s) | 377, 489, 590, 632, 812, 959 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 782, 816 |
| BciT130I | CCWGG | 5 cut(s) | 29, 313, 671, 740, 848 |
| BcoDI | GTCTC | 1 cut(s) | 77 |
| BfaI | CTAG | 4 cut(s) | 89, 263, 327, 1087 |
| BfmI | CTRYAG | 2 cut(s) | 279, 1064 |
| BfoI | RGCGCY | 3 cut(s) | 95, 224, 1044 |
| BlpI | GCTNAGC | 1 cut(s) | 95 |
| Bme1390I | CCNGG | 5 cut(s) | 29, 313, 671, 740, 848 |
| Bme18I | GGWCC | 6 cut(s) | 4, 76, 180, 309, 736, 844 |
| BmgBI | CACGTC | 1 cut(s) | 643 |
| BmrFI | CCNGG | 5 cut(s) | 29, 313, 671, 740, 848 |
| BmsI | GCATC | 2 cut(s) | 379, 790 |
| BmtI | GCTAGC | 1 cut(s) | 92 |
| BpiI | GAAGAC | 1 cut(s) | 71 |
| BpmI | CTGGAG | 1 cut(s) | 869 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 95 |
| BpuEI | CTTGAG | 1 cut(s) | 467 |
| BsaHI | GRCGYC | 1 cut(s) | 1041 |
| BsaJI | CCNNGG | 6 cut(s) | 393, 739, 814, 909, 951, 1044 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 530, 560 |
| Bse118I | RCCGGY | 3 cut(s) | 182, 223, 1037 |
| Bse1I | ACTGG | 2 cut(s) | 100, 544 |
| Bse21I | CCTNAGG | 1 cut(s) | 966 |
| Bse3DI | GCAATG | 1 cut(s) | 1023 |
| BseBI | CCWGG | 5 cut(s) | 29, 313, 671, 740, 848 |
| BseDI | CCNNGG | 6 cut(s) | 393, 739, 814, 909, 951, 1044 |
| BseGI | GGATG | 3 cut(s) | 57, 394, 772 |
| BseMI | GCAATG | 1 cut(s) | 1023 |
| BseMII | CTCAG | 3 cut(s) | 86, 935, 957 |
| BseNI | ACTGG | 2 cut(s) | 100, 544 |
| BseRI | GAGGAG | 2 cut(s) | 398, 728 |
| BseSI | GKGCMC | 3 cut(s) | 412, 642, 728 |
| BseXI | GCAGC | 8 cut(s) | 108, 217, 310, 430, 642, 1040, 1050, 1078 |
| Bsh1236I | CGCG | 3 cut(s) | 9, 188, 414 |
| Bsh1285I | CGRYCG | 1 cut(s) | 814 |
| BshNI | GGYRCC | 2 cut(s) | 1040, 1076 |
| BsiEI | CGRYCG | 1 cut(s) | 814 |
| BsiSI | CCGG | 4 cut(s) | 183, 224, 372, 1038 |
| BslFI | GGGAC | 4 cut(s) | 193, 255, 749, 857 |
| BsmAI | GTCTC | 1 cut(s) | 77 |
| BsmBI | CGTCTC | 1 cut(s) | 77 |
| BsmFI | GGGAC | 4 cut(s) | 193, 255, 749, 857 |
| Bsp120I | GGGCCC | 2 cut(s) | 408, 724 |
| Bsp1286I | GDGCHC | 3 cut(s) | 412, 642, 728 |
| Bsp143I | GATC | 2 cut(s) | 109, 487 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 95 |
| Bsp19I | CCATGG | 1 cut(s) | 1044 |
| BspCNI | CTCAG | 3 cut(s) | 87, 936, 958 |
| BspFNI | CGCG | 3 cut(s) | 9, 188, 414 |
| BspMAI | CTGCAG | 1 cut(s) | 1068 |
| BspOI | GCTAGC | 1 cut(s) | 92 |
| BspPI | GGATC | 2 cut(s) | 104, 117 |
| BspT107I | GGYRCC | 2 cut(s) | 1040, 1076 |
| BsrBI | CCGCTC | 2 cut(s) | 841, 853 |
| BsrDI | GCAATG | 1 cut(s) | 1023 |
| BsrFI | RCCGGY | 3 cut(s) | 182, 223, 1037 |
| BsrI | ACTGG | 2 cut(s) | 100, 544 |
| BssAI | RCCGGY | 3 cut(s) | 182, 223, 1037 |
| BssECI | CCNNGG | 6 cut(s) | 393, 739, 814, 909, 951, 1044 |
| BssMI | GATC | 2 cut(s) | 109, 487 |
| BssNI | GRCGYC | 1 cut(s) | 1041 |
| BssT1I | CCWWGG | 1 cut(s) | 1044 |
| Bst2UI | CCWGG | 5 cut(s) | 29, 313, 671, 740, 848 |
| Bst4CI | ACNGT | 4 cut(s) | 70, 631, 815, 864 |
| Bst6I | CTCTTC | 2 cut(s) | 375, 911 |
| BstACI | GRCGYC | 1 cut(s) | 1041 |
| BstDEI | CTNAG | 3 cut(s) | 95, 944, 966 |
| BstDSI | CCRYGG | 3 cut(s) | 393, 814, 1044 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 266, 743 |
| BstF5I | GGATG | 3 cut(s) | 57, 394, 772 |
| BstFNI | CGCG | 3 cut(s) | 9, 188, 414 |
| BstH2I | RGCGCY | 3 cut(s) | 95, 224, 1044 |
| BstHHI | GCGC | 7 cut(s) | 11, 94, 188, 205, 223, 261, 1043 |
| BstKTI | GATC | 2 cut(s) | 112, 490 |
| BstMAI | GTCTC | 1 cut(s) | 77 |
| BstMBI | GATC | 2 cut(s) | 109, 487 |
| BstMCI | CGRYCG | 1 cut(s) | 814 |
| BstNI | CCWGG | 5 cut(s) | 29, 313, 671, 740, 848 |
| BstNSI | RCATGY | 1 cut(s) | 889 |
| BstSCI | CCNGG | 5 cut(s) | 27, 311, 669, 738, 846 |
| BstSFI | CTRYAG | 2 cut(s) | 279, 1064 |
| BstSLI | GKGCMC | 3 cut(s) | 412, 642, 728 |
| BstUI | CGCG | 3 cut(s) | 9, 188, 414 |
| BstV1I | GCAGC | 8 cut(s) | 108, 217, 310, 430, 642, 1040, 1050, 1078 |
| BstV2I | GAAGAC | 1 cut(s) | 71 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| Bsu36I | CCTNAGG | 1 cut(s) | 966 |
| BtgI | CCRYGG | 3 cut(s) | 393, 814, 1044 |
| BtgZI | GCGATG | 1 cut(s) | 813 |
| BtrI | CACGTC | 1 cut(s) | 643 |
| BtsCI | GGATG | 3 cut(s) | 57, 394, 772 |
| BtsI | GCAGTG | 1 cut(s) | 261 |
| BtsIMutI | CAGTG | 1 cut(s) | 261 |
| CfoI | GCGC | 7 cut(s) | 11, 94, 188, 205, 223, 261, 1043 |
| Cfr10I | RCCGGY | 3 cut(s) | 182, 223, 1037 |
| CseI | GACGC | 2 cut(s) | 94, 786 |
| Csp6I | GTAC | 1 cut(s) | 988 |
| CviAII | CATG | 4 cut(s) | 37, 659, 886, 1045 |
| CviQI | GTAC | 1 cut(s) | 988 |
| DdeI | CTNAG | 3 cut(s) | 95, 944, 966 |
| DinI | GGCGCC | 1 cut(s) | 1042 |
| DpnI | GATC | 2 cut(s) | 111, 489 |
| DpnII | GATC | 2 cut(s) | 109, 487 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 307 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 307 |
| EaeI | YGGCCR | 2 cut(s) | 825, 1047 |
| Eam1104I | CTCTTC | 2 cut(s) | 375, 911 |
| EarI | CTCTTC | 2 cut(s) | 375, 911 |
| EciI | GGCGGA | 1 cut(s) | 1016 |
| Eco130I | CCWWGG | 1 cut(s) | 1044 |
| Eco147I | AGGCCT | 1 cut(s) | 316 |
| Eco24I | GRGCYC | 2 cut(s) | 412, 728 |
| Eco47I | GGWCC | 6 cut(s) | 4, 76, 180, 309, 736, 844 |
| Eco47III | AGCGCT | 1 cut(s) | 93 |
| Eco57I | CTGAAG | 3 cut(s) | 30, 329, 607 |
| Eco81I | CCTNAGG | 1 cut(s) | 966 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 266, 743 |
| EcoO109I | RGGNCCY | 3 cut(s) | 408, 736, 844 |
| EcoRII | CCWGG | 5 cut(s) | 27, 311, 669, 738, 846 |
| EcoT14I | CCWWGG | 1 cut(s) | 1044 |
| EcoT38I | GRGCYC | 2 cut(s) | 412, 728 |
| EgeI | GGCGCC | 1 cut(s) | 1042 |
| EheI | GGCGCC | 1 cut(s) | 1042 |
| ErhI | CCWWGG | 1 cut(s) | 1044 |
| Esp3I | CGTCTC | 1 cut(s) | 77 |
| FaeI | CATG | 4 cut(s) | 40, 662, 889, 1048 |
| FaiI | YATR | 6 cut(s) | 38, 42, 281, 660, 887, 1046 |
| FaqI | GGGAC | 4 cut(s) | 193, 255, 749, 857 |
| FatI | CATG | 4 cut(s) | 36, 658, 885, 1044 |
| FauI | CCCGC | 7 cut(s) | 169, 277, 368, 419, 715, 834, 947 |
| FokI | GGATG | 3 cut(s) | 64, 401, 779 |
| FriOI | GRGCYC | 2 cut(s) | 412, 728 |
| FspBI | CTAG | 4 cut(s) | 89, 263, 327, 1087 |
| GlaI | GCGC | 7 cut(s) | 10, 93, 187, 204, 222, 260, 1042 |
| GsuI | CTGGAG | 1 cut(s) | 869 |
| HaeII | RGCGCY | 3 cut(s) | 95, 224, 1044 |
| HapII | CCGG | 4 cut(s) | 183, 224, 372, 1038 |
| HgaI | GACGC | 2 cut(s) | 94, 786 |
| HhaI | GCGC | 7 cut(s) | 11, 94, 188, 205, 223, 261, 1043 |
| Hin1I | GRCGYC | 1 cut(s) | 1041 |
| Hin1II | CATG | 4 cut(s) | 40, 662, 889, 1048 |
| Hin6I | GCGC | 7 cut(s) | 9, 92, 186, 203, 221, 259, 1041 |
| HinP1I | GCGC | 7 cut(s) | 9, 92, 186, 203, 221, 259, 1041 |
| HincII | GTYRAC | 1 cut(s) | 610 |
| HindII | GTYRAC | 1 cut(s) | 610 |
| HinfI | GANTC | 3 cut(s) | 368, 494, 983 |
| HpaII | CCGG | 4 cut(s) | 183, 224, 372, 1038 |
| HphI | GGTGA | 6 cut(s) | 164, 202, 542, 542, 925, 941 |
| Hpy166II | GTNNAC | 3 cut(s) | 76, 533, 610 |
| Hpy188I | TCNGA | 2 cut(s) | 106, 597 |
| Hpy188III | TCNNGA | 2 cut(s) | 491, 520 |
| Hpy8I | GTNNAC | 3 cut(s) | 76, 533, 610 |
| Hpy99I | CGWCG | 4 cut(s) | 304, 647, 780, 980 |
| HpyAV | CCTTC | 4 cut(s) | 421, 631, 1006, 1066 |
| HpyCH4III | ACNGT | 4 cut(s) | 70, 631, 815, 864 |
| HpyCH4IV | ACGT | 1 cut(s) | 642 |
| HpyCH4V | TGCA | 3 cut(s) | 558, 658, 1066 |
| HpyF3I | CTNAG | 3 cut(s) | 95, 944, 966 |
| HpySE526I | ACGT | 1 cut(s) | 642 |
| Hsp92I | GRCGYC | 1 cut(s) | 1041 |
| Hsp92II | CATG | 4 cut(s) | 40, 662, 889, 1048 |
| HspAI | GCGC | 7 cut(s) | 9, 92, 186, 203, 221, 259, 1041 |
| KasI | GGCGCC | 1 cut(s) | 1040 |
| KroI | GCCGGC | 2 cut(s) | 223, 1037 |
| KroNI | GCCGGC | 2 cut(s) | 225, 1039 |
| Kzo9I | GATC | 2 cut(s) | 109, 487 |
| LmnI | GCTCC | 6 cut(s) | 234, 292, 439, 850, 877, 957 |
| Lsp1109I | GCAGC | 8 cut(s) | 108, 217, 310, 430, 642, 1040, 1050, 1078 |
| LweI | GCATC | 2 cut(s) | 379, 790 |
| MaeI | CTAG | 4 cut(s) | 89, 263, 327, 1087 |
| MaeII | ACGT | 1 cut(s) | 642 |
| MaeIII | GTNAC | 2 cut(s) | 152, 274 |
| MalI | GATC | 2 cut(s) | 111, 489 |
| MbiI | CCGCTC | 2 cut(s) | 841, 853 |
| MboI | GATC | 2 cut(s) | 109, 487 |
| MboII | GAAGA | 4 cut(s) | 76, 392, 436, 928 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MhlI | GDGCHC | 3 cut(s) | 412, 642, 728 |
| MlsI | TGGCCA | 1 cut(s) | 1049 |
| MluCI | AATT | 1 cut(s) | 402 |
| MluNI | TGGCCA | 1 cut(s) | 1049 |
| Mly113I | GGCGCC | 1 cut(s) | 1041 |
| MlyI | GAGTC | 3 cut(s) | 362, 488, 992 |
| MmeI | TCCRAC | 3 cut(s) | 270, 855, 903 |
| Mox20I | TGGCCA | 1 cut(s) | 1049 |
| MroNI | GCCGGC | 2 cut(s) | 223, 1037 |
| MscI | TGGCCA | 1 cut(s) | 1049 |
| MslI | CAYNNNNRTG | 1 cut(s) | 147 |
| Msp20I | TGGCCA | 1 cut(s) | 1049 |
| MspA1I | CMGCKG | 2 cut(s) | 208, 323 |
| MspI | CCGG | 4 cut(s) | 183, 224, 372, 1038 |
| MspR9I | CCNGG | 5 cut(s) | 29, 313, 671, 740, 848 |
| MvaI | CCWGG | 5 cut(s) | 29, 313, 671, 740, 848 |
| MvnI | CGCG | 3 cut(s) | 9, 188, 414 |
| NaeI | GCCGGC | 2 cut(s) | 225, 1039 |
| NarI | GGCGCC | 1 cut(s) | 1041 |
| NcoI | CCATGG | 1 cut(s) | 1044 |
| NdeII | GATC | 2 cut(s) | 109, 487 |
| NgoMIV | GCCGGC | 2 cut(s) | 223, 1037 |
| NheI | GCTAGC | 1 cut(s) | 88 |
| NlaIII | CATG | 4 cut(s) | 40, 662, 889, 1048 |
| NmeAIII | GCCGAG | 3 cut(s) | 538, 934, 976 |
| NmuCI | GTSAC | 2 cut(s) | 152, 274 |
| NspI | RCATGY | 1 cut(s) | 889 |
| PceI | AGGCCT | 1 cut(s) | 316 |
| PciI | ACATGT | 1 cut(s) | 885 |
| PdiI | GCCGGC | 2 cut(s) | 225, 1039 |
| PfoI | TCCNGGA | 1 cut(s) | 27 |
| PleI | GAGTC | 3 cut(s) | 362, 488, 991 |
| PluTI | GGCGCC | 1 cut(s) | 1044 |
| PpsI | GAGTC | 3 cut(s) | 362, 488, 991 |
| PpuMI | RGGWCCY | 2 cut(s) | 736, 844 |
| PscI | ACATGT | 1 cut(s) | 885 |
| Psp5II | RGGWCCY | 2 cut(s) | 736, 844 |
| Psp6I | CCWGG | 5 cut(s) | 27, 311, 669, 738, 846 |
| PspGI | CCWGG | 5 cut(s) | 27, 311, 669, 738, 846 |
| PspOMI | GGGCCC | 2 cut(s) | 408, 724 |
| PspPPI | RGGWCCY | 2 cut(s) | 736, 844 |
| PstI | CTGCAG | 1 cut(s) | 1068 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RsaI | GTAC | 1 cut(s) | 989 |
| RsaNI | GTAC | 1 cut(s) | 988 |
| RseI | CAYNNNNRTG | 1 cut(s) | 147 |
| Sau3AI | GATC | 2 cut(s) | 109, 487 |
| SchI | GAGTC | 3 cut(s) | 362, 488, 992 |
| ScrFI | CCNGG | 5 cut(s) | 29, 313, 671, 740, 848 |
| SduI | GDGCHC | 3 cut(s) | 412, 642, 728 |
| SetI | ASST | 8 cut(s) | 555, 645, 741, 761, 825, 849, 915, 923 |
| SfaNI | GCATC | 2 cut(s) | 379, 790 |
| SfcI | CTRYAG | 2 cut(s) | 279, 1064 |
| SfoI | GGCGCC | 1 cut(s) | 1042 |
| SinI | GGWCC | 6 cut(s) | 4, 76, 180, 309, 736, 844 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 147 |
| SmlI | CTYRAG | 1 cut(s) | 446 |
| SmoI | CTYRAG | 1 cut(s) | 446 |
| Sse9I | AATT | 1 cut(s) | 402 |
| SseBI | AGGCCT | 1 cut(s) | 316 |
| SspDI | GGCGCC | 1 cut(s) | 1040 |
| SspMI | CTAG | 4 cut(s) | 89, 263, 327, 1087 |
| StuI | AGGCCT | 1 cut(s) | 316 |
| StyD4I | CCNGG | 5 cut(s) | 27, 311, 669, 738, 846 |
| StyI | CCWWGG | 1 cut(s) | 1044 |
| TaaI | ACNGT | 4 cut(s) | 70, 631, 815, 864 |
| TaiI | ACGT | 1 cut(s) | 645 |
| TaqI | TCGA | 3 cut(s) | 18, 771, 1083 |
| TasI | AATT | 1 cut(s) | 402 |
| TscAI | CASTG | 1 cut(s) | 261 |
| TseFI | GTSAC | 2 cut(s) | 152, 274 |
| TseI | GCWGC | 8 cut(s) | 121, 205, 323, 418, 655, 1028, 1063, 1066 |
| Tsp45I | GTSAC | 2 cut(s) | 152, 274 |
| TspDTI | ATGAA | 2 cut(s) | 675, 873 |
| TspGWI | ACGGA | 1 cut(s) | 1037 |
| TspRI | CASTG | 1 cut(s) | 261 |
| VpaK11BI | GGWCC | 6 cut(s) | 4, 76, 180, 309, 736, 844 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 266, 743 |
| XceI | RCATGY | 1 cut(s) | 889 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1051 |
| XspI | CTAG | 4 cut(s) | 89, 263, 327, 1087 |