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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 39, 259 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 269 |
| AccBSI | CCGCTC | 1 cut(s) | 103 |
| AccII | CGCG | 1 cut(s) | 301 |
| AciI | CCGC | 8 cut(s) | 103, 115, 205, 216, 227, 335, 349, 485 |
| AclWI | GGATC | 1 cut(s) | 465 |
| AcuI | CTGAAG | 2 cut(s) | 179, 185 |
| AcyI | GRCGYC | 2 cut(s) | 40, 431 |
| AfaI | GTAC | 1 cut(s) | 298 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 49, 102, 269 |
| AgsI | TTSAA | 2 cut(s) | 35, 88 |
| AhlI | ACTAGT | 1 cut(s) | 464 |
| AleI | CACNNNNGTG | 1 cut(s) | 425 |
| AluBI | AGCT | 6 cut(s) | 22, 136, 152, 173, 253, 446 |
| AluI | AGCT | 6 cut(s) | 22, 136, 152, 173, 253, 446 |
| Alw26I | GTCTC | 1 cut(s) | 138 |
| AlwI | GGATC | 1 cut(s) | 465 |
| Ama87I | CYCGRG | 3 cut(s) | 304, 408, 447 |
| AoxI | GGCC | 1 cut(s) | 9 |
| ApeKI | GCWGC | 5 cut(s) | 173, 281, 398, 487, 509 |
| AspLEI | GCGC | 2 cut(s) | 42, 303 |
| AspS9I | GGNCC | 2 cut(s) | 329, 351 |
| AsuHPI | GGTGA | 3 cut(s) | 244, 326, 439 |
| AvaI | CYCGRG | 3 cut(s) | 304, 408, 447 |
| AvaII | GGWCC | 2 cut(s) | 329, 351 |
| BaeGI | GKGCMC | 1 cut(s) | 522 |
| BanI | GGYRCC | 2 cut(s) | 39, 259 |
| BanII | GRGCYC | 1 cut(s) | 440 |
| BbvI | GCAGC | 5 cut(s) | 160, 268, 385, 474, 496 |
| BccI | CCATC | 1 cut(s) | 410 |
| BceAI | ACGGC | 1 cut(s) | 53 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 488, 522 |
| BcoDI | GTCTC | 1 cut(s) | 138 |
| BcuI | ACTAGT | 1 cut(s) | 464 |
| BfaI | CTAG | 3 cut(s) | 137, 170, 465 |
| BfmI | CTRYAG | 1 cut(s) | 441 |
| BfoI | RGCGCY | 1 cut(s) | 43 |
| BisI | GCNGC | 5 cut(s) | 174, 282, 399, 488, 510 |
| BlpI | GCTNAGC | 1 cut(s) | 345 |
| BlsI | GCNGC | 5 cut(s) | 175, 283, 400, 489, 511 |
| Bme18I | GGWCC | 2 cut(s) | 329, 351 |
| BmeT110I | CYCGRG | 3 cut(s) | 304, 408, 447 |
| BmgT120I | GGNCC | 2 cut(s) | 329, 351 |
| BmiI | GGNNCC | 4 cut(s) | 41, 107, 261, 353 |
| BmsI | GCATC | 2 cut(s) | 61, 331 |
| BoxI | GACNNNNGTC | 1 cut(s) | 327 |
| BpmI | CTGGAG | 1 cut(s) | 312 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 345 |
| BpuEI | CTTGAG | 1 cut(s) | 95 |
| BsaHI | GRCGYC | 2 cut(s) | 40, 431 |
| BsaJI | CCNNGG | 2 cut(s) | 48, 325 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 49, 102, 269 |
| Bse118I | RCCGGY | 1 cut(s) | 490 |
| Bse1I | ACTGG | 2 cut(s) | 263, 295 |
| BseDI | CCNNGG | 2 cut(s) | 48, 325 |
| BseGI | GGATG | 3 cut(s) | 76, 343, 421 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 49, 102, 269 |
| BseMII | CTCAG | 2 cut(s) | 359, 380 |
| BseNI | ACTGG | 2 cut(s) | 263, 295 |
| BseSI | GKGCMC | 1 cut(s) | 522 |
| BseXI | GCAGC | 5 cut(s) | 160, 268, 385, 474, 496 |
| Bsh1236I | CGCG | 1 cut(s) | 301 |
| BshFI | GGCC | 1 cut(s) | 11 |
| BshNI | GGYRCC | 2 cut(s) | 39, 259 |
| BsiHKCI | CYCGRG | 3 cut(s) | 304, 408, 447 |
| BsiSI | CCGG | 1 cut(s) | 491 |
| BslFI | GGGAC | 2 cut(s) | 221, 364 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 49, 102, 269 |
| BsmAI | GTCTC | 1 cut(s) | 138 |
| BsmFI | GGGAC | 2 cut(s) | 221, 364 |
| BsmI | GAATGC | 2 cut(s) | 62, 511 |
| BsnI | GGCC | 1 cut(s) | 11 |
| BsoBI | CYCGRG | 3 cut(s) | 304, 408, 447 |
| Bsp1286I | GDGCHC | 2 cut(s) | 440, 522 |
| Bsp143I | GATC | 1 cut(s) | 457 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 345 |
| Bsp19I | CCATGG | 1 cut(s) | 325 |
| BspACI | CCGC | 8 cut(s) | 103, 115, 205, 216, 227, 335, 349, 485 |
| BspANI | GGCC | 1 cut(s) | 11 |
| BspCNI | CTCAG | 2 cut(s) | 358, 379 |
| BspFNI | CGCG | 1 cut(s) | 301 |
| BspLI | GGNNCC | 4 cut(s) | 41, 107, 261, 353 |
| BspPI | GGATC | 1 cut(s) | 465 |
| BspT107I | GGYRCC | 2 cut(s) | 39, 259 |
| BsrBI | CCGCTC | 1 cut(s) | 103 |
| BsrFI | RCCGGY | 1 cut(s) | 490 |
| BsrI | ACTGG | 2 cut(s) | 263, 295 |
| BssAI | RCCGGY | 1 cut(s) | 490 |
| BssECI | CCNNGG | 2 cut(s) | 48, 325 |
| BssMI | GATC | 1 cut(s) | 457 |
| BssNI | GRCGYC | 2 cut(s) | 40, 431 |
| BssT1I | CCWWGG | 2 cut(s) | 48, 325 |
| Bst4CI | ACNGT | 1 cut(s) | 80 |
| Bst6I | CTCTTC | 1 cut(s) | 495 |
| BstACI | GRCGYC | 2 cut(s) | 40, 431 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 251 |
| BstDEI | CTNAG | 4 cut(s) | 2, 183, 345, 366 |
| BstDSI | CCRYGG | 1 cut(s) | 325 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 47 |
| BstF5I | GGATG | 3 cut(s) | 76, 343, 421 |
| BstFNI | CGCG | 1 cut(s) | 301 |
| BstH2I | RGCGCY | 1 cut(s) | 43 |
| BstHHI | GCGC | 2 cut(s) | 42, 303 |
| BstKTI | GATC | 1 cut(s) | 460 |
| BstMAI | GTCTC | 1 cut(s) | 138 |
| BstMBI | GATC | 1 cut(s) | 457 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 179, 224, 259, 341 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 327 |
| BstSFI | CTRYAG | 1 cut(s) | 441 |
| BstSLI | GKGCMC | 1 cut(s) | 522 |
| BstUI | CGCG | 1 cut(s) | 301 |
| BstV1I | GCAGC | 5 cut(s) | 160, 268, 385, 474, 496 |
| BsuRI | GGCC | 1 cut(s) | 11 |
| BtgI | CCRYGG | 1 cut(s) | 325 |
| BtsCI | GGATG | 3 cut(s) | 76, 343, 421 |
| BtsI | GCAGTG | 1 cut(s) | 316 |
| BtsIMutI | CAGTG | 2 cut(s) | 270, 316 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 251 |
| CfoI | GCGC | 2 cut(s) | 42, 303 |
| Cfr10I | RCCGGY | 1 cut(s) | 490 |
| Cfr13I | GGNCC | 2 cut(s) | 329, 351 |
| CseI | GACGC | 1 cut(s) | 439 |
| Csp6I | GTAC | 1 cut(s) | 297 |
| CviAII | CATG | 2 cut(s) | 326, 358 |
| CviQI | GTAC | 1 cut(s) | 297 |
| DdeI | CTNAG | 4 cut(s) | 2, 183, 345, 366 |
| DinI | GGCGCC | 1 cut(s) | 41 |
| DpnI | GATC | 1 cut(s) | 459 |
| DpnII | GATC | 1 cut(s) | 457 |
| Eam1104I | CTCTTC | 1 cut(s) | 495 |
| EarI | CTCTTC | 1 cut(s) | 495 |
| Eco130I | CCWWGG | 2 cut(s) | 48, 325 |
| Eco24I | GRGCYC | 1 cut(s) | 440 |
| Eco47I | GGWCC | 2 cut(s) | 329, 351 |
| Eco57I | CTGAAG | 2 cut(s) | 179, 185 |
| Eco88I | CYCGRG | 3 cut(s) | 304, 408, 447 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 47 |
| EcoT14I | CCWWGG | 2 cut(s) | 48, 325 |
| EcoT38I | GRGCYC | 1 cut(s) | 440 |
| EgeI | GGCGCC | 1 cut(s) | 41 |
| EheI | GGCGCC | 1 cut(s) | 41 |
| ErhI | CCWWGG | 2 cut(s) | 48, 325 |
| FaeI | CATG | 2 cut(s) | 329, 361 |
| FaiI | YATR | 6 cut(s) | 68, 149, 327, 359, 395, 425 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 366, 398 |
| FaqI | GGGAC | 2 cut(s) | 221, 364 |
| FatI | CATG | 2 cut(s) | 325, 357 |
| FauI | CCCGC | 1 cut(s) | 198 |
| Fnu4HI | GCNGC | 5 cut(s) | 174, 282, 399, 488, 510 |
| FokI | GGATG | 3 cut(s) | 83, 350, 428 |
| FriOI | GRGCYC | 1 cut(s) | 440 |
| Fsp4HI | GCNGC | 5 cut(s) | 174, 282, 399, 488, 510 |
| FspBI | CTAG | 3 cut(s) | 137, 170, 465 |
| GlaI | GCGC | 2 cut(s) | 41, 302 |
| GluI | GCNGC | 5 cut(s) | 174, 282, 399, 488, 510 |
| GsuI | CTGGAG | 1 cut(s) | 312 |
| HaeII | RGCGCY | 1 cut(s) | 43 |
| HaeIII | GGCC | 1 cut(s) | 11 |
| HapII | CCGG | 1 cut(s) | 491 |
| HgaI | GACGC | 1 cut(s) | 439 |
| HhaI | GCGC | 2 cut(s) | 42, 303 |
| Hin1I | GRCGYC | 2 cut(s) | 40, 431 |
| Hin1II | CATG | 2 cut(s) | 329, 361 |
| Hin6I | GCGC | 2 cut(s) | 40, 301 |
| HinP1I | GCGC | 2 cut(s) | 40, 301 |
| HinfI | GANTC | 1 cut(s) | 196 |
| HpaII | CCGG | 1 cut(s) | 491 |
| HphI | GGTGA | 3 cut(s) | 244, 326, 439 |
| Hpy188I | TCNGA | 3 cut(s) | 373, 457, 462 |
| Hpy188III | TCNNGA | 1 cut(s) | 410 |
| HpyAV | CCTTC | 1 cut(s) | 172 |
| HpyCH4III | ACNGT | 1 cut(s) | 80 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 179, 224, 259, 341 |
| HpyF3I | CTNAG | 4 cut(s) | 2, 183, 345, 366 |
| Hsp92I | GRCGYC | 2 cut(s) | 40, 431 |
| Hsp92II | CATG | 2 cut(s) | 329, 361 |
| HspAI | GCGC | 2 cut(s) | 40, 301 |
| KasI | GGCGCC | 1 cut(s) | 39 |
| Kzo9I | GATC | 1 cut(s) | 457 |
| LmnI | GCTCC | 1 cut(s) | 117 |
| LpnPI | CCDG | 8 cut(s) | 8, 56, 276, 276, 299, 345, 485, 504 |
| Lsp1109I | GCAGC | 5 cut(s) | 160, 268, 385, 474, 496 |
| LweI | GCATC | 2 cut(s) | 61, 331 |
| MaeI | CTAG | 3 cut(s) | 137, 170, 465 |
| MaeIII | GTNAC | 2 cut(s) | 320, 427 |
| MalI | GATC | 1 cut(s) | 459 |
| MbiI | CCGCTC | 1 cut(s) | 103 |
| MboI | GATC | 1 cut(s) | 457 |
| MboII | GAAGA | 3 cut(s) | 172, 191, 512 |
| MhlI | GDGCHC | 2 cut(s) | 440, 522 |
| Mly113I | GGCGCC | 1 cut(s) | 40 |
| MmeI | TCCRAC | 1 cut(s) | 435 |
| MnlI | CCTC | 6 cut(s) | 119, 223, 238, 287, 406, 443 |
| MslI | CAYNNNNRTG | 1 cut(s) | 425 |
| MspA1I | CMGCKG | 4 cut(s) | 205, 335, 349, 487 |
| MspI | CCGG | 1 cut(s) | 491 |
| Mva1269I | GAATGC | 2 cut(s) | 62, 511 |
| MvnI | CGCG | 1 cut(s) | 301 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 179, 224, 259, 341 |
| NarI | GGCGCC | 1 cut(s) | 40 |
| NcoI | CCATGG | 1 cut(s) | 325 |
| NdeII | GATC | 1 cut(s) | 457 |
| NlaIII | CATG | 2 cut(s) | 329, 361 |
| NlaIV | GGNNCC | 4 cut(s) | 41, 107, 261, 353 |
| NmeAIII | GCCGAG | 2 cut(s) | 412, 459 |
| NmuCI | GTSAC | 2 cut(s) | 320, 427 |
| OliI | CACNNNNGTG | 1 cut(s) | 425 |
| PaeR7I | CTCGAG | 2 cut(s) | 408, 447 |
| PctI | GAATGC | 2 cut(s) | 62, 511 |
| PfeI | GAWTC | 1 cut(s) | 196 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 269 |
| PkrI | GCNGC | 5 cut(s) | 175, 283, 400, 489, 511 |
| PluTI | GGCGCC | 1 cut(s) | 43 |
| PshAI | GACNNNNGTC | 1 cut(s) | 327 |
| PspN4I | GGNNCC | 4 cut(s) | 41, 107, 261, 353 |
| PspPI | GGNCC | 2 cut(s) | 329, 351 |
| PspXI | VCTCGAGB | 1 cut(s) | 447 |
| RsaI | GTAC | 1 cut(s) | 298 |
| RsaNI | GTAC | 1 cut(s) | 297 |
| RseI | CAYNNNNRTG | 1 cut(s) | 425 |
| SatI | GCNGC | 5 cut(s) | 174, 282, 399, 488, 510 |
| Sau3AI | GATC | 1 cut(s) | 457 |
| Sau96I | GGNCC | 2 cut(s) | 329, 351 |
| SduI | GDGCHC | 2 cut(s) | 440, 522 |
| SetI | ASST | 9 cut(s) | 24, 111, 138, 154, 175, 234, 255, 298, 448 |
| SfaNI | GCATC | 2 cut(s) | 61, 331 |
| SfcI | CTRYAG | 1 cut(s) | 441 |
| SfoI | GGCGCC | 1 cut(s) | 41 |
| Sfr274I | CTCGAG | 2 cut(s) | 408, 447 |
| SinI | GGWCC | 2 cut(s) | 329, 351 |
| SlaI | CTCGAG | 2 cut(s) | 408, 447 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 425 |
| SmlI | CTYRAG | 3 cut(s) | 110, 408, 447 |
| SmoI | CTYRAG | 3 cut(s) | 110, 408, 447 |
| SpeI | ACTAGT | 1 cut(s) | 464 |
| SsiI | CCGC | 8 cut(s) | 103, 115, 205, 216, 227, 335, 349, 485 |
| SspDI | GGCGCC | 1 cut(s) | 39 |
| SspMI | CTAG | 3 cut(s) | 137, 170, 465 |
| StyI | CCWWGG | 2 cut(s) | 48, 325 |
| TaaI | ACNGT | 1 cut(s) | 80 |
| TaqI | TCGA | 2 cut(s) | 409, 448 |
| TfiI | GAWTC | 1 cut(s) | 196 |
| TscAI | CASTG | 2 cut(s) | 270, 316 |
| TseFI | GTSAC | 2 cut(s) | 320, 427 |
| TseI | GCWGC | 5 cut(s) | 173, 281, 398, 487, 509 |
| Tsp45I | GTSAC | 2 cut(s) | 320, 427 |
| TspDTI | ATGAA | 1 cut(s) | 491 |
| TspGWI | ACGGA | 1 cut(s) | 519 |
| TspRI | CASTG | 2 cut(s) | 270, 316 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 269 |
| VpaK11BI | GGWCC | 2 cut(s) | 329, 351 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 47 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 19 |
| XhoI | CTCGAG | 2 cut(s) | 408, 447 |
| XspI | CTAG | 3 cut(s) | 137, 170, 465 |