Putative gypsy type transposon
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 5 cut(s) | 773, 961, 1980, 2570, 2663 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 597, 1026 |
| AccBSI | CCGCTC | 4 cut(s) | 2212, 2278, 2341, 2670 |
| AccI | GTMKAC | 2 cut(s) | 783, 1338 |
| AccII | CGCG | 6 cut(s) | 1349, 1351, 1366, 1473, 1500, 1502 |
| AclWI | GGATC | 2 cut(s) | 1263, 1383 |
| AcoI | YGGCCR | 6 cut(s) | 915, 1868, 2220, 2268, 2463, 2613 |
| AcsI | RAATTY | 1 cut(s) | 989 |
| AcuI | CTGAAG | 4 cut(s) | 342, 2044, 2466, 2579 |
| AcvI | CACGTG | 1 cut(s) | 275 |
| AcyI | GRCGYC | 4 cut(s) | 1981, 2114, 2247, 2571 |
| AfaI | GTAC | 5 cut(s) | 1121, 1532, 2096, 2455, 2623 |
| AfeI | AGCGCT | 1 cut(s) | 1702 |
| AflIII | ACRYGT | 6 cut(s) | 272, 274, 486, 1023, 2100, 2299 |
| AgsI | TTSAA | 3 cut(s) | 1484, 2477, 2485 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1207 |
| AjiI | CACGTC | 2 cut(s) | 1906, 2302 |
| AjnI | CCWGG | 2 cut(s) | 765, 1262 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 338, 370 |
| Alw21I | GWGCWC | 3 cut(s) | 399, 638, 2145 |
| Alw26I | GTCTC | 9 cut(s) | 90, 151, 212, 311, 1517, 1568, 1775, 2168, 2308 |
| Alw44I | GTGCAC | 1 cut(s) | 395 |
| AlwI | GGATC | 2 cut(s) | 1263, 1383 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2128 |
| Ama87I | CYCGRG | 1 cut(s) | 1571 |
| Aor51HI | AGCGCT | 1 cut(s) | 1702 |
| ApaI | GGGCCC | 3 cut(s) | 1675, 1924, 2539 |
| ApaLI | GTGCAC | 1 cut(s) | 395 |
| ApoI | RAATTY | 1 cut(s) | 989 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1098, 1515 |
| AsuC2I | CCSGG | 4 cut(s) | 359, 478, 1069, 1837 |
| AsuNHI | GCTAGC | 1 cut(s) | 704 |
| AvaI | CYCGRG | 1 cut(s) | 1571 |
| AvaII | GGWCC | 5 cut(s) | 620, 1224, 1495, 1549, 1827 |
| AxyI | CCTNAGG | 1 cut(s) | 2438 |
| BaeGI | GKGCMC | 5 cut(s) | 399, 1675, 1924, 2539, 2668 |
| BalI | TGGCCA | 2 cut(s) | 2222, 2270 |
| BanI | GGYRCC | 5 cut(s) | 773, 961, 1980, 2570, 2663 |
| BanII | GRGCYC | 6 cut(s) | 638, 854, 1675, 1924, 2145, 2539 |
| BbrPI | CACGTG | 1 cut(s) | 275 |
| BbsI | GAAGAC | 2 cut(s) | 42, 1562 |
| Bbv12I | GWGCWC | 3 cut(s) | 399, 638, 2145 |
| BbvCI | CCTCAGC | 1 cut(s) | 2653 |
| BccI | CCATC | 9 cut(s) | 48, 408, 433, 764, 1322, 1501, 1641, 2279, 2582 |
| BceAI | ACGGC | 6 cut(s) | 764, 891, 902, 1149, 1972, 2055 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 763, 797 |
| BciT130I | CCWGG | 2 cut(s) | 767, 1264 |
| BcnI | CCSGG | 4 cut(s) | 359, 478, 1069, 1837 |
| BcoDI | GTCTC | 9 cut(s) | 90, 151, 212, 311, 1517, 1568, 1775, 2168, 2308 |
| BfaI | CTAG | 9 cut(s) | 59, 560, 569, 639, 669, 705, 980, 2018, 2540 |
| BfmI | CTRYAG | 3 cut(s) | 584, 1704, 2333 |
| BfoI | RGCGCY | 5 cut(s) | 1178, 1704, 1853, 1984, 2574 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1679, 2022 |
| BlpI | GCTNAGC | 4 cut(s) | 89, 150, 211, 1586 |
| BmcAI | AGTACT | 1 cut(s) | 2455 |
| Bme1390I | CCNGG | 6 cut(s) | 359, 478, 767, 1069, 1264, 1837 |
| Bme18I | GGWCC | 5 cut(s) | 620, 1224, 1495, 1549, 1827 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1207 |
| BmeT110I | CYCGRG | 1 cut(s) | 1571 |
| BmgBI | CACGTC | 2 cut(s) | 1906, 2302 |
| BmrFI | CCNGG | 6 cut(s) | 359, 478, 767, 1069, 1264, 1837 |
| BmrI | ACTGGG | 1 cut(s) | 896 |
| BmsI | GCATC | 4 cut(s) | 1719, 2034, 2593, 2600 |
| BmtI | GCTAGC | 1 cut(s) | 708 |
| BmuI | ACTGGG | 1 cut(s) | 896 |
| BpiI | GAAGAC | 2 cut(s) | 42, 1562 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1987, 2019 |
| BpmI | CTGGAG | 6 cut(s) | 612, 749, 1541, 1874, 2150, 2438 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1179, 2144, 2653, 2671 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 89, 150, 211, 1586 |
| BpuEI | CTTGAG | 1 cut(s) | 1177 |
| BpuMI | CCSGG | 4 cut(s) | 359, 478, 1069, 1837 |
| BsaAI | YACGTR | 2 cut(s) | 275, 1123 |
| BsaHI | GRCGYC | 4 cut(s) | 1981, 2114, 2247, 2571 |
| BsaI | GGTCTC | 2 cut(s) | 1517, 2168 |
| BsaWI | WCCGGW | 1 cut(s) | 1603 |
| Bse118I | RCCGGY | 5 cut(s) | 1654, 1810, 1870, 1926, 2611 |
| Bse1I | ACTGG | 6 cut(s) | 902, 1220, 1444, 1584, 1591, 2202 |
| Bse21I | CCTNAGG | 1 cut(s) | 2438 |
| Bse3DI | GCAATG | 2 cut(s) | 1050, 1497 |
| BseBI | CCWGG | 2 cut(s) | 767, 1264 |
| BseGI | GGATG | 8 cut(s) | 59, 400, 444, 775, 807, 886, 1314, 1734 |
| BseMI | GCAATG | 2 cut(s) | 1050, 1497 |
| BseNI | ACTGG | 6 cut(s) | 902, 1220, 1444, 1584, 1591, 2202 |
| BseRI | GAGGAG | 2 cut(s) | 1371, 1817 |
| BseSI | GKGCMC | 5 cut(s) | 399, 1675, 1924, 2539, 2668 |
| BseX3I | CGGCCG | 3 cut(s) | 915, 1868, 2463 |
| BseYI | CCCAGC | 5 cut(s) | 716, 734, 847, 1709, 2531 |
| BsgI | GTGCAG | 2 cut(s) | 1790, 2396 |
| Bsh1236I | CGCG | 6 cut(s) | 1349, 1351, 1366, 1473, 1500, 1502 |
| Bsh1285I | CGRYCG | 4 cut(s) | 374, 918, 1871, 2466 |
| BshNI | GGYRCC | 5 cut(s) | 773, 961, 1980, 2570, 2663 |
| BsiEI | CGRYCG | 4 cut(s) | 374, 918, 1871, 2466 |
| BsiHKAI | GWGCWC | 3 cut(s) | 399, 638, 2145 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1571 |
| BslFI | GGGAC | 5 cut(s) | 1214, 1237, 1342, 2103, 2294 |
| BsmAI | GTCTC | 9 cut(s) | 90, 151, 212, 311, 1517, 1568, 1775, 2168, 2308 |
| BsmBI | CGTCTC | 1 cut(s) | 2308 |
| BsmFI | GGGAC | 5 cut(s) | 1214, 1237, 1342, 2103, 2294 |
| BsmI | GAATGC | 2 cut(s) | 748, 2480 |
| Bso31I | GGTCTC | 2 cut(s) | 1517, 2168 |
| BsoBI | CYCGRG | 1 cut(s) | 1571 |
| Bsp120I | GGGCCC | 3 cut(s) | 1671, 1920, 2535 |
| Bsp1286I | GDGCHC | 8 cut(s) | 399, 638, 854, 1675, 1924, 2145, 2539, 2668 |
| Bsp143I | GATC | 6 cut(s) | 371, 1185, 1255, 1375, 1914, 2130 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 89, 150, 211, 1586 |
| Bsp68I | TCGCGA | 1 cut(s) | 1473 |
| BspFNI | CGCG | 6 cut(s) | 1349, 1351, 1366, 1473, 1500, 1502 |
| BspMAI | CTGCAG | 2 cut(s) | 1708, 2337 |
| BspOI | GCTAGC | 1 cut(s) | 708 |
| BspPI | GGATC | 2 cut(s) | 1263, 1383 |
| BspT107I | GGYRCC | 5 cut(s) | 773, 961, 1980, 2570, 2663 |
| BspTNI | GGTCTC | 2 cut(s) | 1517, 2168 |
| BsrBI | CCGCTC | 4 cut(s) | 2212, 2278, 2341, 2670 |
| BsrDI | GCAATG | 2 cut(s) | 1050, 1497 |
| BsrFI | RCCGGY | 5 cut(s) | 1654, 1810, 1870, 1926, 2611 |
| BsrI | ACTGG | 6 cut(s) | 902, 1220, 1444, 1584, 1591, 2202 |
| BssAI | RCCGGY | 5 cut(s) | 1654, 1810, 1870, 1926, 2611 |
| BssMI | GATC | 6 cut(s) | 371, 1185, 1255, 1375, 1914, 2130 |
| BssNAI | GTATAC | 1 cut(s) | 1339 |
| BssNI | GRCGYC | 4 cut(s) | 1981, 2114, 2247, 2571 |
| BssT1I | CCWWGG | 6 cut(s) | 596, 940, 1796, 2158, 2223, 2352 |
| Bst1107I | GTATAC | 1 cut(s) | 1339 |
| Bst2UI | CCWGG | 2 cut(s) | 767, 1264 |
| Bst4CI | ACNGT | 8 cut(s) | 354, 394, 1056, 1087, 1786, 1962, 2094, 2704 |
| Bst6I | CTCTTC | 3 cut(s) | 1348, 1685, 1887 |
| BstACI | GRCGYC | 4 cut(s) | 1981, 2114, 2247, 2571 |
| BstBAI | YACGTR | 2 cut(s) | 275, 1123 |
| BstDSI | CCRYGG | 1 cut(s) | 2037 |
| BstEII | GGTNACC | 1 cut(s) | 2428 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 408, 2333 |
| BstF5I | GGATG | 8 cut(s) | 59, 400, 444, 775, 807, 886, 1314, 1734 |
| BstFNI | CGCG | 6 cut(s) | 1349, 1351, 1366, 1473, 1500, 1502 |
| BstH2I | RGCGCY | 5 cut(s) | 1178, 1704, 1853, 1984, 2574 |
| BstKTI | GATC | 6 cut(s) | 374, 1188, 1258, 1378, 1917, 2133 |
| BstMAI | GTCTC | 9 cut(s) | 90, 151, 212, 311, 1517, 1568, 1775, 2168, 2308 |
| BstMBI | GATC | 6 cut(s) | 371, 1185, 1255, 1375, 1914, 2130 |
| BstMCI | CGRYCG | 4 cut(s) | 374, 918, 1871, 2466 |
| BstNI | CCWGG | 2 cut(s) | 767, 1264 |
| BstNSI | RCATGY | 4 cut(s) | 490, 1027, 2104, 2557 |
| BstPI | GGTNACC | 1 cut(s) | 2428 |
| BstSCI | CCNGG | 6 cut(s) | 357, 476, 765, 1067, 1262, 1835 |
| BstSFI | CTRYAG | 3 cut(s) | 584, 1704, 2333 |
| BstSLI | GKGCMC | 5 cut(s) | 399, 1675, 1924, 2539, 2668 |
| BstUI | CGCG | 6 cut(s) | 1349, 1351, 1366, 1473, 1500, 1502 |
| BstV2I | GAAGAC | 2 cut(s) | 42, 1562 |
| BstZ17I | GTATAC | 1 cut(s) | 1339 |
| BstZI | CGGCCG | 3 cut(s) | 915, 1868, 2463 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2438 |
| BtgI | CCRYGG | 1 cut(s) | 2037 |
| BtgZI | GCGATG | 2 cut(s) | 2308, 2525 |
| BtrI | CACGTC | 2 cut(s) | 1906, 2302 |
| BtsCI | GGATG | 8 cut(s) | 59, 400, 444, 775, 807, 886, 1314, 1734 |
| BtsI | GCAGTG | 2 cut(s) | 472, 554 |
| BtsIMutI | CAGTG | 5 cut(s) | 472, 554, 909, 1052, 1577 |
| BtuMI | TCGCGA | 1 cut(s) | 1473 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2128 |
| CciNI | GCGGCCGC | 1 cut(s) | 2463 |
| Cfr10I | RCCGGY | 5 cut(s) | 1654, 1810, 1870, 1926, 2611 |
| CseI | GACGC | 6 cut(s) | 518, 1222, 1484, 1567, 2103, 2255 |
| Csp6I | GTAC | 5 cut(s) | 1120, 1531, 2095, 2454, 2622 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 409, 444, 1726, 1761, 2026, 2061 |
| CviAII | CATG | 8 cut(s) | 487, 542, 756, 923, 1024, 1528, 2101, 2554 |
| CviQI | GTAC | 5 cut(s) | 1120, 1531, 2095, 2454, 2622 |
| DinI | GGCGCC | 2 cut(s) | 1982, 2572 |
| DpnI | GATC | 6 cut(s) | 373, 1187, 1257, 1377, 1916, 2132 |
| DpnII | GATC | 6 cut(s) | 371, 1185, 1255, 1375, 1914, 2130 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1207 |
| EaeI | YGGCCR | 6 cut(s) | 915, 1868, 2220, 2268, 2463, 2613 |
| EagI | CGGCCG | 3 cut(s) | 915, 1868, 2463 |
| Eam1104I | CTCTTC | 3 cut(s) | 1348, 1685, 1887 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1207 |
| EarI | CTCTTC | 3 cut(s) | 1348, 1685, 1887 |
| Ecl136II | GAGCTC | 2 cut(s) | 636, 2143 |
| EclXI | CGGCCG | 3 cut(s) | 915, 1868, 2463 |
| Eco130I | CCWWGG | 6 cut(s) | 596, 940, 1796, 2158, 2223, 2352 |
| Eco24I | GRGCYC | 6 cut(s) | 638, 854, 1675, 1924, 2145, 2539 |
| Eco31I | GGTCTC | 2 cut(s) | 1517, 2168 |
| Eco47I | GGWCC | 5 cut(s) | 620, 1224, 1495, 1549, 1827 |
| Eco47III | AGCGCT | 1 cut(s) | 1702 |
| Eco52I | CGGCCG | 3 cut(s) | 915, 1868, 2463 |
| Eco53kI | GAGCTC | 2 cut(s) | 636, 2143 |
| Eco57I | CTGAAG | 4 cut(s) | 342, 2044, 2466, 2579 |
| Eco72I | CACGTG | 1 cut(s) | 275 |
| Eco81I | CCTNAGG | 1 cut(s) | 2438 |
| Eco88I | CYCGRG | 1 cut(s) | 1571 |
| Eco91I | GGTNACC | 1 cut(s) | 2428 |
| EcoICRI | GAGCTC | 2 cut(s) | 636, 2143 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 408, 2333 |
| EcoO109I | RGGNCCY | 7 cut(s) | 234, 1079, 1224, 1671, 1920, 2535, 2536 |
| EcoO65I | GGTNACC | 1 cut(s) | 2428 |
| EcoRII | CCWGG | 2 cut(s) | 765, 1262 |
| EcoT14I | CCWWGG | 6 cut(s) | 596, 940, 1796, 2158, 2223, 2352 |
| EcoT38I | GRGCYC | 6 cut(s) | 638, 854, 1675, 1924, 2145, 2539 |
| EgeI | GGCGCC | 2 cut(s) | 1982, 2572 |
| EheI | GGCGCC | 2 cut(s) | 1982, 2572 |
| ErhI | CCWWGG | 6 cut(s) | 596, 940, 1796, 2158, 2223, 2352 |
| Esp3I | CGTCTC | 1 cut(s) | 2308 |
| FaeI | CATG | 8 cut(s) | 490, 545, 759, 926, 1027, 1531, 2104, 2557 |
| FaqI | GGGAC | 5 cut(s) | 1214, 1237, 1342, 2103, 2294 |
| FatI | CATG | 8 cut(s) | 486, 541, 755, 922, 1023, 1527, 2100, 2553 |
| FblI | GTMKAC | 2 cut(s) | 783, 1338 |
| FokI | GGATG | 8 cut(s) | 66, 387, 451, 782, 814, 893, 1301, 1741 |
| FriOI | GRGCYC | 6 cut(s) | 638, 854, 1675, 1924, 2145, 2539 |
| FspBI | CTAG | 9 cut(s) | 59, 560, 569, 639, 669, 705, 980, 2018, 2540 |
| GsaI | CCCAGC | 5 cut(s) | 720, 738, 851, 1713, 2535 |
| GsuI | CTGGAG | 6 cut(s) | 612, 749, 1541, 1874, 2150, 2438 |
| HaeII | RGCGCY | 5 cut(s) | 1178, 1704, 1853, 1984, 2574 |
| HgaI | GACGC | 6 cut(s) | 518, 1222, 1484, 1567, 2103, 2255 |
| Hin1I | GRCGYC | 4 cut(s) | 1981, 2114, 2247, 2571 |
| Hin1II | CATG | 8 cut(s) | 490, 545, 759, 926, 1027, 1531, 2104, 2557 |
| HincII | GTYRAC | 2 cut(s) | 784, 1876 |
| HindII | GTYRAC | 2 cut(s) | 784, 1876 |
| HinfI | GANTC | 9 cut(s) | 521, 749, 895, 1192, 1202, 1877, 2002, 2384, 2519 |
| Hpy166II | GTNNAC | 7 cut(s) | 397, 784, 1120, 1153, 1339, 1567, 1876 |
| Hpy188III | TCNNGA | 6 cut(s) | 629, 1189, 1472, 1520, 1883, 2167 |
| Hpy8I | GTNNAC | 7 cut(s) | 397, 784, 1120, 1153, 1339, 1567, 1876 |
| HpyCH4III | ACNGT | 8 cut(s) | 354, 394, 1056, 1087, 1786, 1962, 2094, 2704 |
| HpyCH4IV | ACGT | 8 cut(s) | 274, 447, 836, 1122, 1864, 1905, 2265, 2301 |
| HpyCH4V | TGCA | 9 cut(s) | 50, 397, 545, 922, 1140, 1706, 1771, 2335, 2377 |
| HpySE526I | ACGT | 8 cut(s) | 274, 447, 836, 1122, 1864, 1905, 2265, 2301 |
| Hsp92I | GRCGYC | 4 cut(s) | 1981, 2114, 2247, 2571 |
| Hsp92II | CATG | 8 cut(s) | 490, 545, 759, 926, 1027, 1531, 2104, 2557 |
| KasI | GGCGCC | 2 cut(s) | 1980, 2570 |
| KroI | GCCGGC | 2 cut(s) | 1926, 2611 |
| KroNI | GCCGGC | 2 cut(s) | 1928, 2613 |
| Kzo9I | GATC | 6 cut(s) | 371, 1185, 1255, 1375, 1914, 2130 |
| LmnI | GCTCC | 9 cut(s) | 339, 716, 870, 1172, 1467, 1804, 2037, 2140, 2338 |
| LweI | GCATC | 4 cut(s) | 1719, 2034, 2593, 2600 |
| MaeI | CTAG | 9 cut(s) | 59, 560, 569, 639, 669, 705, 980, 2018, 2540 |
| MaeII | ACGT | 8 cut(s) | 274, 447, 836, 1122, 1864, 1905, 2265, 2301 |
| MalI | GATC | 6 cut(s) | 373, 1187, 1257, 1377, 1916, 2132 |
| MbiI | CCGCTC | 4 cut(s) | 2212, 2278, 2341, 2670 |
| MboI | GATC | 6 cut(s) | 371, 1185, 1255, 1375, 1914, 2130 |
| MfeI | CAATTG | 1 cut(s) | 2043 |
| MhlI | GDGCHC | 8 cut(s) | 399, 638, 854, 1675, 1924, 2145, 2539, 2668 |
| MlsI | TGGCCA | 2 cut(s) | 2222, 2270 |
| MluCI | AATT | 3 cut(s) | 989, 1400, 2043 |
| MluNI | TGGCCA | 2 cut(s) | 2222, 2270 |
| Mly113I | GGCGCC | 2 cut(s) | 1981, 2571 |
| MlyI | GAGTC | 6 cut(s) | 758, 1196, 1871, 1996, 2393, 2528 |
| MmeI | TCCRAC | 2 cut(s) | 1281, 1333 |
| Mox20I | TGGCCA | 2 cut(s) | 2222, 2270 |
| MroNI | GCCGGC | 2 cut(s) | 1926, 2611 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1098, 1515 |
| MscI | TGGCCA | 2 cut(s) | 2222, 2270 |
| MseI | TTAA | 5 cut(s) | 243, 1290, 1296, 2502, 2716 |
| MslI | CAYNNNNRTG | 6 cut(s) | 277, 824, 1638, 2105, 2372, 2552 |
| Msp20I | TGGCCA | 2 cut(s) | 2222, 2270 |
| MspR9I | CCNGG | 6 cut(s) | 359, 478, 767, 1069, 1264, 1837 |
| MunI | CAATTG | 1 cut(s) | 2043 |
| Mva1269I | GAATGC | 2 cut(s) | 748, 2480 |
| MvaI | CCWGG | 2 cut(s) | 767, 1264 |
| MvnI | CGCG | 6 cut(s) | 1349, 1351, 1366, 1473, 1500, 1502 |
| NaeI | GCCGGC | 2 cut(s) | 1928, 2613 |
| NarI | GGCGCC | 2 cut(s) | 1981, 2571 |
| NciI | CCSGG | 4 cut(s) | 359, 478, 1069, 1837 |
| NdeII | GATC | 6 cut(s) | 371, 1185, 1255, 1375, 1914, 2130 |
| NgoMIV | GCCGGC | 2 cut(s) | 1926, 2611 |
| NheI | GCTAGC | 1 cut(s) | 704 |
| NlaIII | CATG | 8 cut(s) | 490, 545, 759, 926, 1027, 1531, 2104, 2557 |
| NmeAIII | GCCGAG | 2 cut(s) | 1561, 2045 |
| NmuCI | GTSAC | 9 cut(s) | 103, 115, 164, 225, 268, 817, 946, 1819, 2234 |
| NotI | GCGGCCGC | 1 cut(s) | 2463 |
| NruI | TCGCGA | 1 cut(s) | 1473 |
| NspI | RCATGY | 4 cut(s) | 490, 1027, 2104, 2557 |
| PciI | ACATGT | 3 cut(s) | 486, 1023, 2100 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 245, 530, 2103, 2271 |
| PctI | GAATGC | 2 cut(s) | 748, 2480 |
| PdiI | GCCGGC | 2 cut(s) | 1928, 2613 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1098, 1515 |
| PfeI | GAWTC | 3 cut(s) | 521, 895, 1192 |
| PflFI | GACNNNGTC | 4 cut(s) | 101, 162, 223, 2518 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 597, 1026 |
| PfoI | TCCNGGA | 2 cut(s) | 357, 765 |
| Ple19I | CGATCG | 1 cut(s) | 374 |
| PleI | GAGTC | 6 cut(s) | 757, 1196, 1871, 1996, 2392, 2527 |
| PluTI | GGCGCC | 2 cut(s) | 1984, 2574 |
| PmaCI | CACGTG | 1 cut(s) | 275 |
| PmlI | CACGTG | 1 cut(s) | 275 |
| PpsI | GAGTC | 6 cut(s) | 757, 1196, 1871, 1996, 2392, 2527 |
| Ppu21I | YACGTR | 2 cut(s) | 275, 1123 |
| PpuMI | RGGWCCY | 1 cut(s) | 1224 |
| PscI | ACATGT | 3 cut(s) | 486, 1023, 2100 |
| Psp124BI | GAGCTC | 2 cut(s) | 638, 2145 |
| Psp5II | RGGWCCY | 1 cut(s) | 1224 |
| Psp6I | CCWGG | 2 cut(s) | 765, 1262 |
| PspCI | CACGTG | 1 cut(s) | 275 |
| PspEI | GGTNACC | 1 cut(s) | 2428 |
| PspFI | CCCAGC | 5 cut(s) | 716, 734, 847, 1709, 2531 |
| PspGI | CCWGG | 2 cut(s) | 765, 1262 |
| PspOMI | GGGCCC | 3 cut(s) | 1671, 1920, 2535 |
| PspPPI | RGGWCCY | 1 cut(s) | 1224 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2087, 2119 |
| PstI | CTGCAG | 2 cut(s) | 1708, 2337 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2128 |
| PsyI | GACNNNGTC | 4 cut(s) | 101, 162, 223, 2518 |
| PvuI | CGATCG | 1 cut(s) | 374 |
| PvuII | CAGCTG | 2 cut(s) | 734, 1709 |
| RruI | TCGCGA | 1 cut(s) | 1473 |
| RsaI | GTAC | 5 cut(s) | 1121, 1532, 2096, 2455, 2623 |
| RsaNI | GTAC | 5 cut(s) | 1120, 1531, 2095, 2454, 2622 |
| RseI | CAYNNNNRTG | 6 cut(s) | 277, 824, 1638, 2105, 2372, 2552 |
| SacI | GAGCTC | 2 cut(s) | 638, 2145 |
| SalI | GTCGAC | 1 cut(s) | 782 |
| SaqAI | TTAA | 5 cut(s) | 243, 1290, 1296, 2502, 2716 |
| Sau3AI | GATC | 6 cut(s) | 371, 1185, 1255, 1375, 1914, 2130 |
| ScaI | AGTACT | 1 cut(s) | 2455 |
| SchI | GAGTC | 6 cut(s) | 758, 1196, 1871, 1996, 2393, 2528 |
| ScrFI | CCNGG | 6 cut(s) | 359, 478, 767, 1069, 1264, 1837 |
| SduI | GDGCHC | 8 cut(s) | 399, 638, 854, 1675, 1924, 2145, 2539, 2668 |
| SfaNI | GCATC | 4 cut(s) | 1719, 2034, 2593, 2600 |
| SfcI | CTRYAG | 3 cut(s) | 584, 1704, 2333 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1679 |
| SfoI | GGCGCC | 2 cut(s) | 1982, 2572 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1810 |
| SgrDI | CGTCGACG | 1 cut(s) | 782 |
| SinI | GGWCC | 5 cut(s) | 620, 1224, 1495, 1549, 1827 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 277, 824, 1638, 2105, 2372, 2552 |
| SmlI | CTYRAG | 1 cut(s) | 1156 |
| SmoI | CTYRAG | 1 cut(s) | 1156 |
| Sse9I | AATT | 3 cut(s) | 989, 1400, 2043 |
| SspDI | GGCGCC | 2 cut(s) | 1980, 2570 |
| SspMI | CTAG | 9 cut(s) | 59, 560, 569, 639, 669, 705, 980, 2018, 2540 |
| SstI | GAGCTC | 2 cut(s) | 638, 2145 |
| StyD4I | CCNGG | 6 cut(s) | 357, 476, 765, 1067, 1262, 1835 |
| StyI | CCWWGG | 6 cut(s) | 596, 940, 1796, 2158, 2223, 2352 |
| TaaI | ACNGT | 8 cut(s) | 354, 394, 1056, 1087, 1786, 1962, 2094, 2704 |
| TaiI | ACGT | 8 cut(s) | 277, 450, 839, 1125, 1867, 1908, 2268, 2304 |
| TaqI | TCGA | 9 cut(s) | 461, 783, 823, 1188, 1444, 1954, 2133, 2274, 2577 |
| TaqII | GACCGA | 2 cut(s) | 995, 2531 |
| TasI | AATT | 3 cut(s) | 989, 1400, 2043 |
| TatI | WGTACW | 1 cut(s) | 2453 |
| TfiI | GAWTC | 3 cut(s) | 521, 895, 1192 |
| Tru1I | TTAA | 5 cut(s) | 243, 1290, 1296, 2502, 2716 |
| Tru9I | TTAA | 5 cut(s) | 243, 1290, 1296, 2502, 2716 |
| TscAI | CASTG | 5 cut(s) | 472, 561, 909, 1059, 1584 |
| TseFI | GTSAC | 9 cut(s) | 103, 115, 164, 225, 268, 817, 946, 1819, 2234 |
| Tsp45I | GTSAC | 9 cut(s) | 103, 115, 164, 225, 268, 817, 946, 1819, 2234 |
| TspDTI | ATGAA | 5 cut(s) | 17, 818, 842, 1061, 2310 |
| TspGWI | ACGGA | 2 cut(s) | 522, 1454 |
| TspRI | CASTG | 5 cut(s) | 472, 561, 909, 1059, 1584 |
| Tth111I | GACNNNGTC | 4 cut(s) | 101, 162, 223, 2518 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 597, 1026 |
| VneI | GTGCAC | 1 cut(s) | 395 |
| VpaK11BI | GGWCC | 5 cut(s) | 620, 1224, 1495, 1549, 1827 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 408, 2333 |
| XapI | RAATTY | 1 cut(s) | 989 |
| XceI | RCATGY | 4 cut(s) | 490, 1027, 2104, 2557 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1634 |
| XmiI | GTMKAC | 2 cut(s) | 783, 1338 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1098, 1515 |
| XspI | CTAG | 9 cut(s) | 59, 560, 569, 639, 669, 705, 980, 2018, 2540 |
| ZrmI | AGTACT | 1 cut(s) | 2455 |