Cytosolic purine
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1892 |
| Acc36I | ACCTGC | 1 cut(s) | 562 |
| AccB1I | GGYRCC | 2 cut(s) | 1321, 2002 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 159, 588, 810, 1878, 1933 |
| AccBSI | CCGCTC | 3 cut(s) | 1183, 1381, 1699 |
| AccI | GTMKAC | 1 cut(s) | 1065 |
| AccII | CGCG | 6 cut(s) | 330, 824, 840, 936, 972, 1662 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AclWI | GGATC | 4 cut(s) | 49, 857, 961, 1367 |
| AcoI | YGGCCR | 5 cut(s) | 747, 1113, 1483, 1629, 1677 |
| AcsI | RAATTY | 2 cut(s) | 537, 1361 |
| AcuI | CTGAAG | 1 cut(s) | 1188 |
| AcyI | GRCGYC | 2 cut(s) | 1322, 1889 |
| AfaI | GTAC | 3 cut(s) | 818, 1031, 1799 |
| AflIII | ACRYGT | 2 cut(s) | 48, 822 |
| AgsI | TTSAA | 2 cut(s) | 58, 1783 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 726, 1170, 1893 |
| AjnI | CCWGG | 6 cut(s) | 409, 501, 1077, 1213, 1515, 1926 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1376, 1408, 1554, 1586 |
| Alw21I | GWGCWC | 1 cut(s) | 1512 |
| Alw26I | GTCTC | 4 cut(s) | 143, 238, 1181, 1223 |
| AlwI | GGATC | 4 cut(s) | 49, 857, 961, 1367 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 810, 1078 |
| Ama87I | CYCGRG | 4 cut(s) | 22, 1178, 1220, 1376 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| ApoI | RAATTY | 2 cut(s) | 537, 1361 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 548, 580 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 660 |
| AspLEI | GCGC | 6 cut(s) | 263, 739, 938, 1279, 1324, 1871 |
| AspS9I | GGNCC | 4 cut(s) | 322, 641, 1259, 1937 |
| AsuHPI | GGTGA | 4 cut(s) | 217, 311, 520, 1309 |
| AsuII | TTCGAA | 1 cut(s) | 1526 |
| AsuNHI | GCTAGC | 1 cut(s) | 5 |
| AvaI | CYCGRG | 4 cut(s) | 22, 1178, 1220, 1376 |
| AvaII | GGWCC | 2 cut(s) | 322, 1937 |
| AxyI | CCTNAGG | 1 cut(s) | 1536 |
| BalI | TGGCCA | 4 cut(s) | 1115, 1485, 1631, 1679 |
| BanI | GGYRCC | 2 cut(s) | 1321, 2002 |
| BanII | GRGCYC | 1 cut(s) | 1512 |
| BauI | CACGAG | 2 cut(s) | 316, 1505 |
| BbsI | GAAGAC | 2 cut(s) | 1889, 1892 |
| Bbv12I | GWGCWC | 1 cut(s) | 1512 |
| BccI | CCATC | 6 cut(s) | 500, 1404, 1424, 1494, 1688, 1918 |
| BceAI | ACGGC | 3 cut(s) | 1139, 1450, 1751 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 681, 715 |
| BciT130I | CCWGG | 6 cut(s) | 411, 503, 1079, 1215, 1517, 1928 |
| BclI | TGATCA | 2 cut(s) | 1147, 1966 |
| BcoDI | GTCTC | 4 cut(s) | 143, 238, 1181, 1223 |
| BfmI | CTRYAG | 2 cut(s) | 354, 700 |
| BfoI | RGCGCY | 1 cut(s) | 1325 |
| BfuAI | ACCTGC | 1 cut(s) | 562 |
| BglII | AGATCT | 1 cut(s) | 18 |
| Bme1390I | CCNGG | 6 cut(s) | 411, 503, 1079, 1215, 1517, 1928 |
| Bme18I | GGWCC | 2 cut(s) | 322, 1937 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 726, 1170, 1893 |
| BmeT110I | CYCGRG | 4 cut(s) | 22, 1178, 1220, 1376 |
| BmgT120I | GGNCC | 4 cut(s) | 322, 641, 1259, 1937 |
| BmiI | GGNNCC | 9 cut(s) | 112, 274, 323, 1202, 1260, 1323, 1435, 1938, 2004 |
| BmrFI | CCNGG | 6 cut(s) | 411, 503, 1079, 1215, 1517, 1928 |
| BmrI | ACTGGG | 1 cut(s) | 1888 |
| BmsI | GCATC | 6 cut(s) | 241, 964, 1003, 1132, 1582, 1765 |
| BmtI | GCTAGC | 1 cut(s) | 9 |
| BmuI | ACTGGG | 1 cut(s) | 1888 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1061 |
| BpiI | GAAGAC | 2 cut(s) | 1889, 1892 |
| BpmI | CTGGAG | 2 cut(s) | 1706, 1757 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1596 |
| Bpu14I | TTCGAA | 1 cut(s) | 1526 |
| BpuEI | CTTGAG | 1 cut(s) | 1715 |
| BsaHI | GRCGYC | 2 cut(s) | 1322, 1889 |
| BsaI | GGTCTC | 2 cut(s) | 143, 1223 |
| BsaWI | WCCGGW | 3 cut(s) | 38, 1892, 1999 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1376, 1406 |
| Bse118I | RCCGGY | 3 cut(s) | 182, 1324, 1829 |
| Bse1I | ACTGG | 4 cut(s) | 804, 1740, 1883, 1914 |
| Bse21I | CCTNAGG | 1 cut(s) | 1536 |
| Bse3DI | GCAATG | 2 cut(s) | 996, 1651 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 6 cut(s) | 411, 503, 1079, 1215, 1517, 1928 |
| BseGI | GGATG | 6 cut(s) | 352, 1174, 1435, 1597, 1780, 1910 |
| BseMI | GCAATG | 2 cut(s) | 996, 1651 |
| BseMII | CTCAG | 4 cut(s) | 1107, 1527, 1610, 1661 |
| BseNI | ACTGG | 4 cut(s) | 804, 1740, 1883, 1914 |
| BseRI | GAGGAG | 3 cut(s) | 227, 254, 1762 |
| BseYI | CCCAGC | 3 cut(s) | 810, 1411, 1989 |
| BsgI | GTGCAG | 2 cut(s) | 210, 1020 |
| Bsh1236I | CGCG | 6 cut(s) | 330, 824, 840, 936, 972, 1662 |
| Bsh1285I | CGRYCG | 3 cut(s) | 187, 648, 1764 |
| BshNI | GGYRCC | 2 cut(s) | 1321, 2002 |
| BsiEI | CGRYCG | 3 cut(s) | 187, 648, 1764 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1512 |
| BsiHKCI | CYCGRG | 4 cut(s) | 22, 1178, 1220, 1376 |
| BsiSI | CCGG | 8 cut(s) | 39, 183, 464, 1038, 1325, 1830, 1893, 2000 |
| BslFI | GGGAC | 2 cut(s) | 349, 564 |
| BsmAI | GTCTC | 4 cut(s) | 143, 238, 1181, 1223 |
| BsmFI | GGGAC | 2 cut(s) | 349, 564 |
| BsmI | GAATGC | 1 cut(s) | 1646 |
| Bso31I | GGTCTC | 2 cut(s) | 143, 1223 |
| BsoBI | CYCGRG | 4 cut(s) | 22, 1178, 1220, 1376 |
| Bsp119I | TTCGAA | 1 cut(s) | 1526 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1512 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp143I | GATC | 8 cut(s) | 18, 41, 543, 849, 966, 1147, 1372, 1966 |
| Bsp68I | TCGCGA | 1 cut(s) | 330 |
| BspCNI | CTCAG | 4 cut(s) | 1106, 1528, 1609, 1662 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspFNI | CGCG | 6 cut(s) | 330, 824, 840, 936, 972, 1662 |
| BspHI | TCATGA | 1 cut(s) | 1969 |
| BspLI | GGNNCC | 9 cut(s) | 112, 274, 323, 1202, 1260, 1323, 1435, 1938, 2004 |
| BspMAI | CTGCAG | 1 cut(s) | 704 |
| BspMI | ACCTGC | 1 cut(s) | 562 |
| BspOI | GCTAGC | 1 cut(s) | 9 |
| BspPI | GGATC | 4 cut(s) | 49, 857, 961, 1367 |
| BspQI | GCTCTTC | 1 cut(s) | 1517 |
| BspT104I | TTCGAA | 1 cut(s) | 1526 |
| BspT107I | GGYRCC | 2 cut(s) | 1321, 2002 |
| BspTNI | GGTCTC | 2 cut(s) | 143, 1223 |
| BsrBI | CCGCTC | 3 cut(s) | 1183, 1381, 1699 |
| BsrDI | GCAATG | 2 cut(s) | 996, 1651 |
| BsrFI | RCCGGY | 3 cut(s) | 182, 1324, 1829 |
| BsrI | ACTGG | 4 cut(s) | 804, 1740, 1883, 1914 |
| BssAI | RCCGGY | 3 cut(s) | 182, 1324, 1829 |
| BssMI | GATC | 8 cut(s) | 18, 41, 543, 849, 966, 1147, 1372, 1966 |
| BssNI | GRCGYC | 2 cut(s) | 1322, 1889 |
| BssSI | CACGAG | 2 cut(s) | 316, 1505 |
| BssT1I | CCWWGG | 4 cut(s) | 1632, 1650, 1842, 1954 |
| Bst2BI | CACGAG | 2 cut(s) | 316, 1505 |
| Bst2UI | CCWGG | 6 cut(s) | 411, 503, 1079, 1215, 1517, 1928 |
| Bst4CI | ACNGT | 9 cut(s) | 120, 600, 649, 927, 951, 1063, 1450, 1461, 1626 |
| Bst6I | CTCTTC | 4 cut(s) | 280, 825, 1280, 1517 |
| BstACI | GRCGYC | 2 cut(s) | 1322, 1889 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1552 |
| BstBI | TTCGAA | 1 cut(s) | 1526 |
| BstDEI | CTNAG | 5 cut(s) | 1018, 1093, 1536, 1596, 1670 |
| BstDSI | CCRYGG | 3 cut(s) | 648, 1104, 1155 |
| BstF5I | GGATG | 6 cut(s) | 352, 1174, 1435, 1597, 1780, 1910 |
| BstFNI | CGCG | 6 cut(s) | 330, 824, 840, 936, 972, 1662 |
| BstH2I | RGCGCY | 1 cut(s) | 1325 |
| BstHHI | GCGC | 6 cut(s) | 263, 739, 938, 1279, 1324, 1871 |
| BstKTI | GATC | 8 cut(s) | 21, 44, 546, 852, 969, 1150, 1375, 1969 |
| BstMAI | GTCTC | 4 cut(s) | 143, 238, 1181, 1223 |
| BstMBI | GATC | 8 cut(s) | 18, 41, 543, 849, 966, 1147, 1372, 1966 |
| BstMCI | CGRYCG | 3 cut(s) | 187, 648, 1764 |
| BstNI | CCWGG | 6 cut(s) | 411, 503, 1079, 1215, 1517, 1928 |
| BstNSI | RCATGY | 1 cut(s) | 52 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1061 |
| BstSCI | CCNGG | 6 cut(s) | 409, 501, 1077, 1213, 1515, 1926 |
| BstSFI | CTRYAG | 2 cut(s) | 354, 700 |
| BstUI | CGCG | 6 cut(s) | 330, 824, 840, 936, 972, 1662 |
| BstV2I | GAAGAC | 2 cut(s) | 1889, 1892 |
| BstX2I | RGATCY | 1 cut(s) | 18 |
| BstYI | RGATCY | 1 cut(s) | 18 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1536 |
| BtgI | CCRYGG | 3 cut(s) | 648, 1104, 1155 |
| BtgZI | GCGATG | 1 cut(s) | 987 |
| BtsCI | GGATG | 6 cut(s) | 352, 1174, 1435, 1597, 1780, 1910 |
| BtsI | GCAGTG | 1 cut(s) | 709 |
| BtsIMutI | CAGTG | 4 cut(s) | 116, 709, 811, 947 |
| BtuMI | TCGCGA | 1 cut(s) | 330 |
| BveI | ACCTGC | 1 cut(s) | 562 |
| CaiI | CAGNNNCTG | 2 cut(s) | 810, 1078 |
| CciI | TCATGA | 1 cut(s) | 1969 |
| CfoI | GCGC | 6 cut(s) | 263, 739, 938, 1279, 1324, 1871 |
| Cfr10I | RCCGGY | 3 cut(s) | 182, 1324, 1829 |
| Cfr13I | GGNCC | 4 cut(s) | 322, 641, 1259, 1937 |
| CseI | GACGC | 4 cut(s) | 80, 520, 784, 830 |
| Csp6I | GTAC | 3 cut(s) | 817, 1030, 1798 |
| CviAII | CATG | 7 cut(s) | 49, 104, 769, 1117, 1205, 1727, 1970 |
| CviQI | GTAC | 3 cut(s) | 817, 1030, 1798 |
| DdeI | CTNAG | 5 cut(s) | 1018, 1093, 1536, 1596, 1670 |
| DinI | GGCGCC | 1 cut(s) | 1323 |
| DpnI | GATC | 8 cut(s) | 20, 43, 545, 851, 968, 1149, 1374, 1968 |
| DpnII | GATC | 8 cut(s) | 18, 41, 543, 849, 966, 1147, 1372, 1966 |
| DriI | GACNNNNNGTC | 3 cut(s) | 726, 1170, 1893 |
| EaeI | YGGCCR | 5 cut(s) | 747, 1113, 1483, 1629, 1677 |
| Eam1104I | CTCTTC | 4 cut(s) | 280, 825, 1280, 1517 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 726, 1170, 1893 |
| EarI | CTCTTC | 4 cut(s) | 280, 825, 1280, 1517 |
| EciI | GGCGGA | 7 cut(s) | 80, 265, 488, 878, 1604, 1652, 1994 |
| Ecl136II | GAGCTC | 1 cut(s) | 1510 |
| Eco130I | CCWWGG | 4 cut(s) | 1632, 1650, 1842, 1954 |
| Eco24I | GRGCYC | 1 cut(s) | 1512 |
| Eco31I | GGTCTC | 2 cut(s) | 143, 1223 |
| Eco47I | GGWCC | 2 cut(s) | 322, 1937 |
| Eco53kI | GAGCTC | 1 cut(s) | 1510 |
| Eco57I | CTGAAG | 1 cut(s) | 1188 |
| Eco81I | CCTNAGG | 1 cut(s) | 1536 |
| Eco88I | CYCGRG | 4 cut(s) | 22, 1178, 1220, 1376 |
| EcoICRI | GAGCTC | 1 cut(s) | 1510 |
| EcoO109I | RGGNCCY | 3 cut(s) | 322, 1259, 1937 |
| EcoRI | GAATTC | 1 cut(s) | 1361 |
| EcoRII | CCWGG | 6 cut(s) | 409, 501, 1077, 1213, 1515, 1926 |
| EcoT14I | CCWWGG | 4 cut(s) | 1632, 1650, 1842, 1954 |
| EcoT22I | ATGCAT | 1 cut(s) | 996 |
| EcoT38I | GRGCYC | 1 cut(s) | 1512 |
| EgeI | GGCGCC | 1 cut(s) | 1323 |
| EheI | GGCGCC | 1 cut(s) | 1323 |
| ErhI | CCWWGG | 4 cut(s) | 1632, 1650, 1842, 1954 |
| FaeI | CATG | 7 cut(s) | 52, 107, 772, 1120, 1208, 1730, 1973 |
| FaqI | GGGAC | 2 cut(s) | 349, 564 |
| FatI | CATG | 7 cut(s) | 48, 103, 768, 1116, 1204, 1726, 1969 |
| FbaI | TGATCA | 2 cut(s) | 1147, 1966 |
| FblI | GTMKAC | 1 cut(s) | 1065 |
| FokI | GGATG | 6 cut(s) | 359, 1161, 1442, 1604, 1787, 1897 |
| FriOI | GRGCYC | 1 cut(s) | 1512 |
| GlaI | GCGC | 6 cut(s) | 262, 738, 937, 1278, 1323, 1870 |
| GsaI | CCCAGC | 3 cut(s) | 814, 1415, 1993 |
| GsuI | CTGGAG | 2 cut(s) | 1706, 1757 |
| HaeII | RGCGCY | 1 cut(s) | 1325 |
| HapII | CCGG | 8 cut(s) | 39, 183, 464, 1038, 1325, 1830, 1893, 2000 |
| HgaI | GACGC | 4 cut(s) | 80, 520, 784, 830 |
| HhaI | GCGC | 6 cut(s) | 263, 739, 938, 1279, 1324, 1871 |
| Hin1I | GRCGYC | 2 cut(s) | 1322, 1889 |
| Hin1II | CATG | 7 cut(s) | 52, 107, 772, 1120, 1208, 1730, 1973 |
| Hin6I | GCGC | 6 cut(s) | 261, 737, 936, 1277, 1322, 1869 |
| HinP1I | GCGC | 6 cut(s) | 261, 737, 936, 1277, 1322, 1869 |
| HincII | GTYRAC | 2 cut(s) | 930, 1066 |
| HindII | GTYRAC | 2 cut(s) | 930, 1066 |
| HindIII | AAGCTT | 1 cut(s) | 1806 |
| HpaII | CCGG | 8 cut(s) | 39, 183, 464, 1038, 1325, 1830, 1893, 2000 |
| HphI | GGTGA | 4 cut(s) | 217, 311, 520, 1309 |
| Hpy166II | GTNNAC | 3 cut(s) | 484, 930, 1066 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 1096, 1147, 1857 |
| Hpy8I | GTNNAC | 3 cut(s) | 484, 930, 1066 |
| Hpy99I | CGWCG | 8 cut(s) | 14, 335, 729, 800, 824, 1067, 1450, 1499 |
| HpyAV | CCTTC | 6 cut(s) | 335, 632, 784, 950, 1163, 1819 |
| HpyCH4III | ACNGT | 9 cut(s) | 120, 600, 649, 927, 951, 1063, 1450, 1461, 1626 |
| HpyCH4IV | ACGT | 2 cut(s) | 60, 1889 |
| HpyF3I | CTNAG | 5 cut(s) | 1018, 1093, 1536, 1596, 1670 |
| HpySE526I | ACGT | 2 cut(s) | 60, 1889 |
| Hsp92I | GRCGYC | 2 cut(s) | 1322, 1889 |
| Hsp92II | CATG | 7 cut(s) | 52, 107, 772, 1120, 1208, 1730, 1973 |
| HspAI | GCGC | 6 cut(s) | 261, 737, 936, 1277, 1322, 1869 |
| KasI | GGCGCC | 1 cut(s) | 1321 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| KroI | GCCGGC | 1 cut(s) | 1324 |
| KroNI | GCCGGC | 1 cut(s) | 1326 |
| Ksp22I | TGATCA | 2 cut(s) | 1147, 1966 |
| Kzo9I | GATC | 8 cut(s) | 18, 41, 543, 849, 966, 1147, 1372, 1966 |
| LguI | GCTCTTC | 1 cut(s) | 1517 |
| LmnI | GCTCC | 2 cut(s) | 1200, 1270 |
| LweI | GCATC | 6 cut(s) | 241, 964, 1003, 1132, 1582, 1765 |
| MaeII | ACGT | 2 cut(s) | 60, 1889 |
| MaeIII | GTNAC | 3 cut(s) | 508, 1084, 1162 |
| MalI | GATC | 8 cut(s) | 20, 43, 545, 851, 968, 1149, 1374, 1968 |
| MbiI | CCGCTC | 3 cut(s) | 1183, 1381, 1699 |
| MboI | GATC | 8 cut(s) | 18, 41, 543, 849, 966, 1147, 1372, 1966 |
| MboII | GAAGA | 8 cut(s) | 297, 487, 842, 877, 1297, 1504, 1889, 1897 |
| MflI | RGATCY | 1 cut(s) | 18 |
| MhlI | GDGCHC | 1 cut(s) | 1512 |
| MlsI | TGGCCA | 4 cut(s) | 1115, 1485, 1631, 1679 |
| MluCI | AATT | 4 cut(s) | 537, 715, 874, 1361 |
| MluI | ACGCGT | 1 cut(s) | 822 |
| MluNI | TGGCCA | 4 cut(s) | 1115, 1485, 1631, 1679 |
| Mly113I | GGCGCC | 1 cut(s) | 1322 |
| MlyI | GAGTC | 7 cut(s) | 77, 331, 1713, 1796, 1967, 1979, 1990 |
| Mox20I | TGGCCA | 4 cut(s) | 1115, 1485, 1631, 1679 |
| Mph1103I | ATGCAT | 1 cut(s) | 996 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MroNI | GCCGGC | 1 cut(s) | 1324 |
| MroXI | GAANNNNTTC | 1 cut(s) | 660 |
| MscI | TGGCCA | 4 cut(s) | 1115, 1485, 1631, 1679 |
| Msp20I | TGGCCA | 4 cut(s) | 1115, 1485, 1631, 1679 |
| MspA1I | CMGCKG | 5 cut(s) | 270, 479, 520, 1252, 1993 |
| MspI | CCGG | 8 cut(s) | 39, 183, 464, 1038, 1325, 1830, 1893, 2000 |
| MspR9I | CCNGG | 6 cut(s) | 411, 503, 1079, 1215, 1517, 1928 |
| Mva1269I | GAATGC | 1 cut(s) | 1646 |
| MvaI | CCWGG | 6 cut(s) | 411, 503, 1079, 1215, 1517, 1928 |
| MvnI | CGCG | 6 cut(s) | 330, 824, 840, 936, 972, 1662 |
| NaeI | GCCGGC | 1 cut(s) | 1326 |
| NarI | GGCGCC | 1 cut(s) | 1322 |
| NdeII | GATC | 8 cut(s) | 18, 41, 543, 849, 966, 1147, 1372, 1966 |
| NgoMIV | GCCGGC | 1 cut(s) | 1324 |
| NheI | GCTAGC | 1 cut(s) | 5 |
| NlaIII | CATG | 7 cut(s) | 52, 107, 772, 1120, 1208, 1730, 1973 |
| NlaIV | GGNNCC | 9 cut(s) | 112, 274, 323, 1202, 1260, 1323, 1435, 1938, 2004 |
| NmeAIII | GCCGAG | 5 cut(s) | 304, 775, 1454, 1921, 1955 |
| NmuCI | GTSAC | 2 cut(s) | 508, 1162 |
| NruI | TCGCGA | 1 cut(s) | 330 |
| NsiI | ATGCAT | 1 cut(s) | 996 |
| NspI | RCATGY | 1 cut(s) | 52 |
| NspV | TTCGAA | 1 cut(s) | 1526 |
| PaeR7I | CTCGAG | 2 cut(s) | 22, 1220 |
| PagI | TCATGA | 1 cut(s) | 1969 |
| PasI | CCCWGGG | 1 cut(s) | 1927 |
| PciI | ACATGT | 1 cut(s) | 48 |
| PciSI | GCTCTTC | 1 cut(s) | 1517 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 92, 184, 1503 |
| PctI | GAATGC | 1 cut(s) | 1646 |
| PdiI | GCCGGC | 1 cut(s) | 1326 |
| PdmI | GAANNNNTTC | 1 cut(s) | 660 |
| PfeI | GAWTC | 5 cut(s) | 35, 764, 868, 1340, 1416 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 159, 588, 810, 1878, 1933 |
| PleI | GAGTC | 7 cut(s) | 77, 331, 1713, 1795, 1967, 1979, 1990 |
| PluTI | GGCGCC | 1 cut(s) | 1325 |
| PpsI | GAGTC | 7 cut(s) | 77, 331, 1713, 1795, 1967, 1979, 1990 |
| PpuMI | RGGWCCY | 2 cut(s) | 322, 1937 |
| PscI | ACATGT | 1 cut(s) | 48 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1061 |
| Psp124BI | GAGCTC | 1 cut(s) | 1512 |
| Psp5II | RGGWCCY | 2 cut(s) | 322, 1937 |
| Psp6I | CCWGG | 6 cut(s) | 409, 501, 1077, 1213, 1515, 1926 |
| PspFI | CCCAGC | 3 cut(s) | 810, 1411, 1989 |
| PspGI | CCWGG | 6 cut(s) | 409, 501, 1077, 1213, 1515, 1926 |
| PspN4I | GGNNCC | 9 cut(s) | 112, 274, 323, 1202, 1260, 1323, 1435, 1938, 2004 |
| PspPI | GGNCC | 4 cut(s) | 322, 641, 1259, 1937 |
| PspPPI | RGGWCCY | 2 cut(s) | 322, 1937 |
| PstI | CTGCAG | 1 cut(s) | 704 |
| PstNI | CAGNNNCTG | 2 cut(s) | 810, 1078 |
| PsuI | RGATCY | 1 cut(s) | 18 |
| RruI | TCGCGA | 1 cut(s) | 330 |
| RsaI | GTAC | 3 cut(s) | 818, 1031, 1799 |
| RsaNI | GTAC | 3 cut(s) | 817, 1030, 1798 |
| SacI | GAGCTC | 1 cut(s) | 1512 |
| SalI | GTCGAC | 1 cut(s) | 1064 |
| SapI | GCTCTTC | 1 cut(s) | 1517 |
| Sau3AI | GATC | 8 cut(s) | 18, 41, 543, 849, 966, 1147, 1372, 1966 |
| Sau96I | GGNCC | 4 cut(s) | 322, 641, 1259, 1937 |
| SchI | GAGTC | 7 cut(s) | 77, 331, 1713, 1796, 1967, 1979, 1990 |
| ScrFI | CCNGG | 6 cut(s) | 411, 503, 1079, 1215, 1517, 1928 |
| SduI | GDGCHC | 1 cut(s) | 1512 |
| SfaNI | GCATC | 6 cut(s) | 241, 964, 1003, 1132, 1582, 1765 |
| SfcI | CTRYAG | 2 cut(s) | 354, 700 |
| SfoI | GGCGCC | 1 cut(s) | 1323 |
| Sfr274I | CTCGAG | 2 cut(s) | 22, 1220 |
| SfuI | TTCGAA | 1 cut(s) | 1526 |
| SinI | GGWCC | 2 cut(s) | 322, 1937 |
| SlaI | CTCGAG | 2 cut(s) | 22, 1220 |
| SmlI | CTYRAG | 3 cut(s) | 22, 1220, 1694 |
| SmoI | CTYRAG | 3 cut(s) | 22, 1220, 1694 |
| Sse9I | AATT | 4 cut(s) | 537, 715, 874, 1361 |
| SspDI | GGCGCC | 1 cut(s) | 1321 |
| SstI | GAGCTC | 1 cut(s) | 1512 |
| StyD4I | CCNGG | 6 cut(s) | 409, 501, 1077, 1213, 1515, 1926 |
| StyI | CCWWGG | 4 cut(s) | 1632, 1650, 1842, 1954 |
| TaaI | ACNGT | 9 cut(s) | 120, 600, 649, 927, 951, 1063, 1450, 1461, 1626 |
| TaiI | ACGT | 2 cut(s) | 63, 1892 |
| TaqI | TCGA | 8 cut(s) | 23, 138, 555, 1065, 1221, 1526, 1566, 1683 |
| TaqII | GACCGA | 1 cut(s) | 1385 |
| TasI | AATT | 4 cut(s) | 537, 715, 874, 1361 |
| TfiI | GAWTC | 5 cut(s) | 35, 764, 868, 1340, 1416 |
| TscAI | CASTG | 4 cut(s) | 123, 709, 811, 954 |
| TseFI | GTSAC | 2 cut(s) | 508, 1162 |
| Tsp45I | GTSAC | 2 cut(s) | 508, 1162 |
| TspDTI | ATGAA | 1 cut(s) | 318 |
| TspGWI | ACGGA | 3 cut(s) | 84, 392, 1483 |
| TspRI | CASTG | 4 cut(s) | 123, 709, 811, 954 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 159, 588, 810, 1878, 1933 |
| VpaK11BI | GGWCC | 2 cut(s) | 322, 1937 |
| XapI | RAATTY | 2 cut(s) | 537, 1361 |
| XceI | RCATGY | 1 cut(s) | 52 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1211 |
| XhoI | CTCGAG | 2 cut(s) | 22, 1220 |
| XmiI | GTMKAC | 1 cut(s) | 1065 |
| XmnI | GAANNNNTTC | 1 cut(s) | 660 |
| ZraI | GACGTC | 1 cut(s) | 1890 |
| Zsp2I | ATGCAT | 1 cut(s) | 996 |