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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1143 |
| AarI | CACCTGC | 1 cut(s) | 946 |
| AatII | GACGTC | 1 cut(s) | 489 |
| Acc36I | ACCTGC | 2 cut(s) | 946, 1857 |
| Acc65I | GGTACC | 1 cut(s) | 1619 |
| AccB1I | GGYRCC | 7 cut(s) | 982, 1401, 1541, 1619, 2055, 2501, 2624 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 558, 883, 2421 |
| AccBSI | CCGCTC | 5 cut(s) | 1130, 1825, 1978, 2618, 2651 |
| AccII | CGCG | 7 cut(s) | 229, 234, 736, 1052, 1266, 1793, 2094 |
| AccIII | TCCGGA | 1 cut(s) | 624 |
| AclWI | GGATC | 2 cut(s) | 2187, 2665 |
| AcoI | YGGCCR | 3 cut(s) | 773, 2109, 2601 |
| AcsI | RAATTY | 2 cut(s) | 879, 1000 |
| AcuI | CTGAAG | 5 cut(s) | 1622, 2006, 2195, 2201, 2420 |
| AcyI | GRCGYC | 5 cut(s) | 177, 486, 983, 1402, 2636 |
| AfaI | GTAC | 3 cut(s) | 546, 1281, 1621 |
| AfeI | AGCGCT | 1 cut(s) | 661 |
| AgeI | ACCGGT | 1 cut(s) | 1229 |
| AgsI | TTSAA | 5 cut(s) | 781, 1006, 1425, 1970, 2579 |
| AjnI | CCWGG | 7 cut(s) | 194, 205, 258, 843, 2444, 2598, 2653 |
| AleI | CACNNNNGTG | 1 cut(s) | 2630 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1820, 1852 |
| AluBI | AGCT | 8 cut(s) | 97, 327, 557, 766, 2017, 2038, 2101, 2168 |
| AluI | AGCT | 8 cut(s) | 97, 327, 557, 766, 2017, 2038, 2101, 2168 |
| Alw21I | GWGCWC | 2 cut(s) | 828, 2686 |
| Alw44I | GTGCAC | 1 cut(s) | 824 |
| AlwI | GGATC | 2 cut(s) | 2187, 2665 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 212 |
| Ama87I | CYCGRG | 5 cut(s) | 1626, 1856, 2509, 2613, 2726 |
| Aor13HI | TCCGGA | 1 cut(s) | 624 |
| Aor51HI | AGCGCT | 1 cut(s) | 661 |
| ApaI | GGGCCC | 3 cut(s) | 256, 1525, 2414 |
| ApaLI | GTGCAC | 1 cut(s) | 824 |
| ApoI | RAATTY | 2 cut(s) | 879, 1000 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 871, 903 |
| AseI | ATTAAT | 1 cut(s) | 453 |
| AsiGI | ACCGGT | 1 cut(s) | 1229 |
| Asp718I | GGTACC | 1 cut(s) | 1619 |
| AspA2I | CCTAGG | 1 cut(s) | 395 |
| AspLEI | GCGC | 6 cut(s) | 234, 662, 985, 1268, 1404, 1505 |
| AsuC2I | CCSGG | 3 cut(s) | 278, 699, 1436 |
| AsuII | TTCGAA | 1 cut(s) | 1076 |
| AsuNHI | GCTAGC | 1 cut(s) | 665 |
| AvaI | CYCGRG | 5 cut(s) | 1626, 1856, 2509, 2613, 2726 |
| AvaII | GGWCC | 3 cut(s) | 38, 887, 2122 |
| AvrII | CCTAGG | 1 cut(s) | 395 |
| BaeGI | GKGCMC | 7 cut(s) | 144, 256, 828, 1525, 1546, 2414, 2506 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 606, 639 |
| BalI | TGGCCA | 1 cut(s) | 2111 |
| BanI | GGYRCC | 7 cut(s) | 982, 1401, 1541, 1619, 2055, 2501, 2624 |
| BanII | GRGCYC | 6 cut(s) | 256, 360, 1525, 1935, 2414, 2645 |
| BauI | CACGAG | 1 cut(s) | 827 |
| BbsI | GAAGAC | 1 cut(s) | 1214 |
| Bbv12I | GWGCWC | 2 cut(s) | 828, 2686 |
| BccI | CCATC | 7 cut(s) | 674, 1050, 1703, 1885, 2350, 2423, 2615 |
| BceAI | ACGGC | 5 cut(s) | 760, 806, 1976, 2280, 2588 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 79, 113, 1355, 1389 |
| BciT130I | CCWGG | 7 cut(s) | 196, 207, 260, 845, 2446, 2600, 2655 |
| BciVI | GTATCC | 1 cut(s) | 607 |
| BcnI | CCSGG | 3 cut(s) | 278, 699, 1436 |
| BfaI | CTAG | 6 cut(s) | 396, 530, 600, 666, 1781, 2696 |
| BfmI | CTRYAG | 2 cut(s) | 106, 2018 |
| BfoI | RGCGCY | 4 cut(s) | 663, 986, 1405, 1506 |
| BfuAI | ACCTGC | 2 cut(s) | 946, 1857 |
| BfuI | GTATCC | 1 cut(s) | 607 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 811, 1440, 1449 |
| BlnI | CCTAGG | 1 cut(s) | 395 |
| BlpI | GCTNAGC | 1 cut(s) | 1300 |
| Bme18I | GGWCC | 3 cut(s) | 38, 887, 2122 |
| BmeT110I | CYCGRG | 5 cut(s) | 1626, 1856, 2509, 2613, 2726 |
| BmrI | ACTGGG | 2 cut(s) | 1347, 2431 |
| BmsI | GCATC | 5 cut(s) | 205, 1363, 1576, 1927, 2077 |
| BmtI | GCTAGC | 1 cut(s) | 669 |
| BmuI | ACTGGG | 2 cut(s) | 1347, 2431 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1218 |
| BpiI | GAAGAC | 1 cut(s) | 1214 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 602, 634 |
| BpmI | CTGGAG | 4 cut(s) | 827, 1596, 1991, 2300 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1300 |
| Bpu14I | TTCGAA | 1 cut(s) | 1076 |
| BpuEI | CTTGAG | 3 cut(s) | 985, 1292, 2147 |
| BpuMI | CCSGG | 3 cut(s) | 278, 699, 1436 |
| BsaAI | YACGTR | 1 cut(s) | 1518 |
| BsaHI | GRCGYC | 5 cut(s) | 177, 486, 983, 1402, 2636 |
| BsaI | GGTCTC | 6 cut(s) | 181, 688, 1025, 1685, 2009, 2018 |
| BsaWI | WCCGGW | 2 cut(s) | 624, 1229 |
| Bse118I | RCCGGY | 2 cut(s) | 1229, 1455 |
| Bse1I | ACTGG | 3 cut(s) | 542, 1353, 2426 |
| Bse3DI | GCAATG | 2 cut(s) | 135, 576 |
| BseAI | TCCGGA | 1 cut(s) | 624 |
| BseBI | CCWGG | 7 cut(s) | 196, 207, 260, 845, 2446, 2600, 2655 |
| BseGI | GGATG | 7 cut(s) | 790, 1061, 1879, 2050, 2092, 2548, 2626 |
| BseMI | GCAATG | 2 cut(s) | 135, 576 |
| BseMII | CTCAG | 6 cut(s) | 324, 633, 1314, 2277, 2292, 2564 |
| BseNI | ACTGG | 3 cut(s) | 542, 1353, 2426 |
| BseRI | GAGGAG | 3 cut(s) | 434, 718, 1610 |
| BseSI | GKGCMC | 7 cut(s) | 144, 256, 828, 1525, 1546, 2414, 2506 |
| BseX3I | CGGCCG | 1 cut(s) | 773 |
| BsgI | GTGCAG | 2 cut(s) | 64, 1787 |
| Bsh1236I | CGCG | 7 cut(s) | 229, 234, 736, 1052, 1266, 1793, 2094 |
| Bsh1285I | CGRYCG | 2 cut(s) | 373, 776 |
| BshNI | GGYRCC | 7 cut(s) | 982, 1401, 1541, 1619, 2055, 2501, 2624 |
| BshTI | ACCGGT | 1 cut(s) | 1229 |
| BsiEI | CGRYCG | 2 cut(s) | 373, 776 |
| BsiHKAI | GWGCWC | 2 cut(s) | 828, 2686 |
| BsiHKCI | CYCGRG | 5 cut(s) | 1626, 1856, 2509, 2613, 2726 |
| BsiSI | CCGG | 8 cut(s) | 278, 625, 698, 1230, 1435, 1456, 2222, 2537 |
| BslFI | GGGAC | 5 cut(s) | 24, 251, 404, 2135, 2419 |
| BsmBI | CGTCTC | 3 cut(s) | 446, 477, 496 |
| BsmFI | GGGAC | 5 cut(s) | 24, 251, 404, 2135, 2419 |
| BsmI | GAATGC | 1 cut(s) | 2309 |
| Bso31I | GGTCTC | 6 cut(s) | 181, 688, 1025, 1685, 2009, 2018 |
| BsoBI | CYCGRG | 5 cut(s) | 1626, 1856, 2509, 2613, 2726 |
| Bsp119I | TTCGAA | 1 cut(s) | 1076 |
| Bsp120I | GGGCCC | 3 cut(s) | 252, 1521, 2410 |
| Bsp13I | TCCGGA | 1 cut(s) | 624 |
| Bsp143I | GATC | 7 cut(s) | 75, 244, 534, 834, 1249, 2179, 2657 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1300 |
| Bsp19I | CCATGG | 1 cut(s) | 2628 |
| BspCNI | CTCAG | 6 cut(s) | 325, 632, 1313, 2278, 2293, 2563 |
| BspEI | TCCGGA | 1 cut(s) | 624 |
| BspFNI | CGCG | 7 cut(s) | 229, 234, 736, 1052, 1266, 1793, 2094 |
| BspMAI | CTGCAG | 2 cut(s) | 110, 2022 |
| BspMI | ACCTGC | 2 cut(s) | 946, 1857 |
| BspOI | GCTAGC | 1 cut(s) | 669 |
| BspPI | GGATC | 2 cut(s) | 2187, 2665 |
| BspT104I | TTCGAA | 1 cut(s) | 1076 |
| BspT107I | GGYRCC | 7 cut(s) | 982, 1401, 1541, 1619, 2055, 2501, 2624 |
| BspTNI | GGTCTC | 6 cut(s) | 181, 688, 1025, 1685, 2009, 2018 |
| BsrBI | CCGCTC | 5 cut(s) | 1130, 1825, 1978, 2618, 2651 |
| BsrDI | GCAATG | 2 cut(s) | 135, 576 |
| BsrFI | RCCGGY | 2 cut(s) | 1229, 1455 |
| BsrI | ACTGG | 3 cut(s) | 542, 1353, 2426 |
| BssAI | RCCGGY | 2 cut(s) | 1229, 1455 |
| BssMI | GATC | 7 cut(s) | 75, 244, 534, 834, 1249, 2179, 2657 |
| BssNI | GRCGYC | 5 cut(s) | 177, 486, 983, 1402, 2636 |
| BssSI | CACGAG | 1 cut(s) | 827 |
| BssT1I | CCWWGG | 6 cut(s) | 395, 1022, 1445, 1549, 1881, 2628 |
| Bst2BI | CACGAG | 1 cut(s) | 827 |
| Bst2UI | CCWGG | 7 cut(s) | 196, 207, 260, 845, 2446, 2600, 2655 |
| Bst4CI | ACNGT | 7 cut(s) | 895, 1257, 1313, 1410, 1478, 1741, 1747 |
| Bst6I | CTCTTC | 3 cut(s) | 635, 1668, 1709 |
| BstACI | GRCGYC | 5 cut(s) | 177, 486, 983, 1402, 2636 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1586, 2501 |
| BstBAI | YACGTR | 1 cut(s) | 1518 |
| BstBI | TTCGAA | 1 cut(s) | 1076 |
| BstDEI | CTNAG | 7 cut(s) | 282, 333, 619, 1300, 2286, 2301, 2550 |
| BstDSI | CCRYGG | 3 cut(s) | 1050, 2092, 2628 |
| BstF5I | GGATG | 7 cut(s) | 790, 1061, 1879, 2050, 2092, 2548, 2626 |
| BstFNI | CGCG | 7 cut(s) | 229, 234, 736, 1052, 1266, 1793, 2094 |
| BstH2I | RGCGCY | 4 cut(s) | 663, 986, 1405, 1506 |
| BstHHI | GCGC | 6 cut(s) | 234, 662, 985, 1268, 1404, 1505 |
| BstKTI | GATC | 7 cut(s) | 78, 247, 537, 837, 1252, 2182, 2660 |
| BstMBI | GATC | 7 cut(s) | 75, 244, 534, 834, 1249, 2179, 2657 |
| BstMCI | CGRYCG | 2 cut(s) | 373, 776 |
| BstNI | CCWGG | 7 cut(s) | 196, 207, 260, 845, 2446, 2600, 2655 |
| BstNSI | RCATGY | 2 cut(s) | 818, 2398 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1218 |
| BstSFI | CTRYAG | 2 cut(s) | 106, 2018 |
| BstSLI | GKGCMC | 7 cut(s) | 144, 256, 828, 1525, 1546, 2414, 2506 |
| BstUI | CGCG | 7 cut(s) | 229, 234, 736, 1052, 1266, 1793, 2094 |
| BstV2I | GAAGAC | 1 cut(s) | 1214 |
| BstX2I | RGATCY | 1 cut(s) | 2657 |
| BstYI | RGATCY | 1 cut(s) | 2657 |
| BstZI | CGGCCG | 1 cut(s) | 773 |
| BsuI | GTATCC | 1 cut(s) | 607 |
| BtgI | CCRYGG | 3 cut(s) | 1050, 2092, 2628 |
| BtsCI | GGATG | 7 cut(s) | 790, 1061, 1879, 2050, 2092, 2548, 2626 |
| BtsIMutI | CAGTG | 2 cut(s) | 330, 1360 |
| BveI | ACCTGC | 2 cut(s) | 946, 1857 |
| CaiI | CAGNNNCTG | 1 cut(s) | 212 |
| CfoI | GCGC | 6 cut(s) | 234, 662, 985, 1268, 1404, 1505 |
| Cfr10I | RCCGGY | 2 cut(s) | 1229, 1455 |
| Cfr42I | CCGCGG | 2 cut(s) | 1053, 2095 |
| CseI | GACGC | 9 cut(s) | 166, 223, 742, 758, 783, 1782, 2087, 2421, 2644 |
| Csp6I | GTAC | 3 cut(s) | 545, 1280, 1620 |
| CspAI | ACCGGT | 1 cut(s) | 1229 |
| CviQI | GTAC | 3 cut(s) | 545, 1280, 1620 |
| DdeI | CTNAG | 7 cut(s) | 282, 333, 619, 1300, 2286, 2301, 2550 |
| DinI | GGCGCC | 2 cut(s) | 984, 1403 |
| DpnI | GATC | 7 cut(s) | 77, 246, 536, 836, 1251, 2181, 2659 |
| DpnII | GATC | 7 cut(s) | 75, 244, 534, 834, 1249, 2179, 2657 |
| DraI | TTTAAA | 1 cut(s) | 2326 |
| EaeI | YGGCCR | 3 cut(s) | 773, 2109, 2601 |
| EagI | CGGCCG | 1 cut(s) | 773 |
| Eam1104I | CTCTTC | 3 cut(s) | 635, 1668, 1709 |
| EarI | CTCTTC | 3 cut(s) | 635, 1668, 1709 |
| EciI | GGCGGA | 2 cut(s) | 2057, 2555 |
| EclXI | CGGCCG | 1 cut(s) | 773 |
| Eco130I | CCWWGG | 6 cut(s) | 395, 1022, 1445, 1549, 1881, 2628 |
| Eco147I | AGGCCT | 2 cut(s) | 1606, 1880 |
| Eco24I | GRGCYC | 6 cut(s) | 256, 360, 1525, 1935, 2414, 2645 |
| Eco31I | GGTCTC | 6 cut(s) | 181, 688, 1025, 1685, 2009, 2018 |
| Eco47I | GGWCC | 3 cut(s) | 38, 887, 2122 |
| Eco47III | AGCGCT | 1 cut(s) | 661 |
| Eco52I | CGGCCG | 1 cut(s) | 773 |
| Eco57I | CTGAAG | 5 cut(s) | 1622, 2006, 2195, 2201, 2420 |
| Eco88I | CYCGRG | 5 cut(s) | 1626, 1856, 2509, 2613, 2726 |
| EcoO109I | RGGNCCY | 8 cut(s) | 38, 253, 1469, 1522, 1729, 2122, 2410, 2411 |
| EcoRII | CCWGG | 7 cut(s) | 194, 205, 258, 843, 2444, 2598, 2653 |
| EcoT14I | CCWWGG | 6 cut(s) | 395, 1022, 1445, 1549, 1881, 2628 |
| EcoT38I | GRGCYC | 6 cut(s) | 256, 360, 1525, 1935, 2414, 2645 |
| EgeI | GGCGCC | 2 cut(s) | 984, 1403 |
| EheI | GGCGCC | 2 cut(s) | 984, 1403 |
| ErhI | CCWWGG | 6 cut(s) | 395, 1022, 1445, 1549, 1881, 2628 |
| Esp3I | CGTCTC | 3 cut(s) | 446, 477, 496 |
| FaqI | GGGAC | 5 cut(s) | 24, 251, 404, 2135, 2419 |
| FokI | GGATG | 7 cut(s) | 797, 1068, 1886, 2057, 2099, 2555, 2633 |
| FriOI | GRGCYC | 6 cut(s) | 256, 360, 1525, 1935, 2414, 2645 |
| FspBI | CTAG | 6 cut(s) | 396, 530, 600, 666, 1781, 2696 |
| GlaI | GCGC | 6 cut(s) | 233, 661, 984, 1267, 1403, 1504 |
| GsuI | CTGGAG | 4 cut(s) | 827, 1596, 1991, 2300 |
| HaeII | RGCGCY | 4 cut(s) | 663, 986, 1405, 1506 |
| HapII | CCGG | 8 cut(s) | 278, 625, 698, 1230, 1435, 1456, 2222, 2537 |
| HgaI | GACGC | 9 cut(s) | 166, 223, 742, 758, 783, 1782, 2087, 2421, 2644 |
| HhaI | GCGC | 6 cut(s) | 234, 662, 985, 1268, 1404, 1505 |
| Hin1I | GRCGYC | 5 cut(s) | 177, 486, 983, 1402, 2636 |
| Hin6I | GCGC | 6 cut(s) | 232, 660, 983, 1266, 1402, 1503 |
| HinP1I | GCGC | 6 cut(s) | 232, 660, 983, 1266, 1402, 1503 |
| HincII | GTYRAC | 2 cut(s) | 1260, 1316 |
| HindII | GTYRAC | 2 cut(s) | 1260, 1316 |
| HpaII | CCGG | 8 cut(s) | 278, 625, 698, 1230, 1435, 1456, 2222, 2537 |
| Hpy166II | GTNNAC | 7 cut(s) | 826, 961, 1260, 1316, 1413, 2608, 2701 |
| Hpy188I | TCNGA | 7 cut(s) | 182, 214, 523, 1127, 1641, 1890, 2302 |
| Hpy188III | TCNNGA | 9 cut(s) | 41, 380, 503, 590, 625, 997, 1099, 1781, 2008 |
| Hpy8I | GTNNAC | 7 cut(s) | 826, 961, 1260, 1316, 1413, 2608, 2701 |
| Hpy99I | CGWCG | 9 cut(s) | 182, 378, 491, 591, 736, 774, 799, 1410, 1741 |
| HpyCH4III | ACNGT | 7 cut(s) | 895, 1257, 1313, 1410, 1478, 1741, 1747 |
| HpyCH4IV | ACGT | 5 cut(s) | 51, 486, 512, 586, 1517 |
| HpyF3I | CTNAG | 7 cut(s) | 282, 333, 619, 1300, 2286, 2301, 2550 |
| HpySE526I | ACGT | 5 cut(s) | 51, 486, 512, 586, 1517 |
| Hsp92I | GRCGYC | 5 cut(s) | 177, 486, 983, 1402, 2636 |
| HspAI | GCGC | 6 cut(s) | 232, 660, 983, 1266, 1402, 1503 |
| KasI | GGCGCC | 2 cut(s) | 982, 1401 |
| Kpn2I | TCCGGA | 1 cut(s) | 624 |
| KpnI | GGTACC | 1 cut(s) | 1623 |
| KroI | GCCGGC | 1 cut(s) | 1455 |
| KroNI | GCCGGC | 1 cut(s) | 1457 |
| KspI | CCGCGG | 2 cut(s) | 1053, 2095 |
| Kzo9I | GATC | 7 cut(s) | 75, 244, 534, 834, 1249, 2179, 2657 |
| LweI | GCATC | 5 cut(s) | 205, 1363, 1576, 1927, 2077 |
| MaeI | CTAG | 6 cut(s) | 396, 530, 600, 666, 1781, 2696 |
| MaeII | ACGT | 5 cut(s) | 51, 486, 512, 586, 1517 |
| MalI | GATC | 7 cut(s) | 77, 246, 536, 836, 1251, 2181, 2659 |
| MbiI | CCGCTC | 5 cut(s) | 1130, 1825, 1978, 2618, 2651 |
| MboI | GATC | 7 cut(s) | 75, 244, 534, 834, 1249, 2179, 2657 |
| MfeI | CAATTG | 1 cut(s) | 1564 |
| MflI | RGATCY | 1 cut(s) | 2657 |
| MlsI | TGGCCA | 1 cut(s) | 2111 |
| MluCI | AATT | 6 cut(s) | 879, 920, 1000, 1564, 2150, 2574 |
| MluNI | TGGCCA | 1 cut(s) | 2111 |
| Mly113I | GGCGCC | 2 cut(s) | 983, 1402 |
| MlyI | GAGTC | 5 cut(s) | 273, 721, 1255, 2551, 2680 |
| MmeI | TCCRAC | 5 cut(s) | 160, 914, 1851, 1924, 2238 |
| Mox20I | TGGCCA | 1 cut(s) | 2111 |
| MroI | TCCGGA | 1 cut(s) | 624 |
| MroNI | GCCGGC | 1 cut(s) | 1455 |
| MscI | TGGCCA | 1 cut(s) | 2111 |
| MseI | TTAA | 8 cut(s) | 224, 453, 498, 647, 992, 1104, 2208, 2325 |
| MslI | CAYNNNNRTG | 3 cut(s) | 915, 1845, 2630 |
| Msp20I | TGGCCA | 1 cut(s) | 2111 |
| MspA1I | CMGCKG | 7 cut(s) | 240, 677, 1052, 1616, 2094, 2554, 2720 |
| MspI | CCGG | 8 cut(s) | 278, 625, 698, 1230, 1435, 1456, 2222, 2537 |
| MssI | GTTTAAAC | 1 cut(s) | 2326 |
| MunI | CAATTG | 1 cut(s) | 1564 |
| Mva1269I | GAATGC | 1 cut(s) | 2309 |
| MvaI | CCWGG | 7 cut(s) | 196, 207, 260, 845, 2446, 2600, 2655 |
| MvnI | CGCG | 7 cut(s) | 229, 234, 736, 1052, 1266, 1793, 2094 |
| NaeI | GCCGGC | 1 cut(s) | 1457 |
| NarI | GGCGCC | 2 cut(s) | 983, 1402 |
| NciI | CCSGG | 3 cut(s) | 278, 699, 1436 |
| NcoI | CCATGG | 1 cut(s) | 2628 |
| NdeII | GATC | 7 cut(s) | 75, 244, 534, 834, 1249, 2179, 2657 |
| NgoMIV | GCCGGC | 1 cut(s) | 1455 |
| NheI | GCTAGC | 1 cut(s) | 665 |
| NmeAIII | GCCGAG | 3 cut(s) | 1378, 2254, 2664 |
| NmuCI | GTSAC | 7 cut(s) | 513, 850, 895, 1741, 1956, 2075, 2632 |
| NspI | RCATGY | 2 cut(s) | 818, 2398 |
| NspV | TTCGAA | 1 cut(s) | 1076 |
| OliI | CACNNNNGTG | 1 cut(s) | 2630 |
| PaeI | GCATGC | 1 cut(s) | 818 |
| PaeR7I | CTCGAG | 1 cut(s) | 2509 |
| PaqCI | CACCTGC | 1 cut(s) | 946 |
| PasI | CCCWGGG | 2 cut(s) | 195, 259 |
| PceI | AGGCCT | 2 cut(s) | 1606, 1880 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1106, 1414 |
| PctI | GAATGC | 1 cut(s) | 2309 |
| PdiI | GCCGGC | 1 cut(s) | 1457 |
| PfeI | GAWTC | 7 cut(s) | 401, 1010, 1198, 1784, 2212, 2225, 2546 |
| PflFI | GACNNNGTC | 1 cut(s) | 488 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 558, 883, 2421 |
| PfoI | TCCNGGA | 1 cut(s) | 2653 |
| PinAI | ACCGGT | 1 cut(s) | 1229 |
| PleI | GAGTC | 5 cut(s) | 272, 720, 1255, 2551, 2679 |
| PluTI | GGCGCC | 2 cut(s) | 986, 1405 |
| PmeI | GTTTAAAC | 1 cut(s) | 2326 |
| PpsI | GAGTC | 5 cut(s) | 272, 720, 1255, 2551, 2679 |
| Ppu21I | YACGTR | 1 cut(s) | 1518 |
| PpuMI | RGGWCCY | 2 cut(s) | 38, 2122 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1218 |
| PshBI | ATTAAT | 1 cut(s) | 453 |
| PsiI | TTATAA | 1 cut(s) | 1143 |
| Psp5II | RGGWCCY | 2 cut(s) | 38, 2122 |
| Psp6I | CCWGG | 7 cut(s) | 194, 205, 258, 843, 2444, 2598, 2653 |
| PspGI | CCWGG | 7 cut(s) | 194, 205, 258, 843, 2444, 2598, 2653 |
| PspOMI | GGGCCC | 3 cut(s) | 252, 1521, 2410 |
| PspPPI | RGGWCCY | 2 cut(s) | 38, 2122 |
| PspXI | VCTCGAGB | 1 cut(s) | 2509 |
| PstI | CTGCAG | 2 cut(s) | 110, 2022 |
| PstNI | CAGNNNCTG | 1 cut(s) | 212 |
| PsuI | RGATCY | 1 cut(s) | 2657 |
| PsyI | GACNNNGTC | 1 cut(s) | 488 |
| RsaI | GTAC | 3 cut(s) | 546, 1281, 1621 |
| RsaNI | GTAC | 3 cut(s) | 545, 1280, 1620 |
| RseI | CAYNNNNRTG | 3 cut(s) | 915, 1845, 2630 |
| SacII | CCGCGG | 2 cut(s) | 1053, 2095 |
| SaqAI | TTAA | 8 cut(s) | 224, 453, 498, 647, 992, 1104, 2208, 2325 |
| Sau3AI | GATC | 7 cut(s) | 75, 244, 534, 834, 1249, 2179, 2657 |
| SchI | GAGTC | 5 cut(s) | 273, 721, 1255, 2551, 2680 |
| SfaNI | GCATC | 5 cut(s) | 205, 1363, 1576, 1927, 2077 |
| SfcI | CTRYAG | 2 cut(s) | 106, 2018 |
| SfoI | GGCGCC | 2 cut(s) | 984, 1403 |
| Sfr274I | CTCGAG | 1 cut(s) | 2509 |
| Sfr303I | CCGCGG | 2 cut(s) | 1053, 2095 |
| SfuI | TTCGAA | 1 cut(s) | 1076 |
| SgrBI | CCGCGG | 2 cut(s) | 1053, 2095 |
| SinI | GGWCC | 3 cut(s) | 38, 887, 2122 |
| SlaI | CTCGAG | 1 cut(s) | 2509 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 915, 1845, 2630 |
| SmlI | CTYRAG | 4 cut(s) | 964, 1271, 2126, 2509 |
| SmoI | CTYRAG | 4 cut(s) | 964, 1271, 2126, 2509 |
| SphI | GCATGC | 1 cut(s) | 818 |
| Sse9I | AATT | 6 cut(s) | 879, 920, 1000, 1564, 2150, 2574 |
| SseBI | AGGCCT | 2 cut(s) | 1606, 1880 |
| SspDI | GGCGCC | 2 cut(s) | 982, 1401 |
| SspI | AATATT | 1 cut(s) | 25 |
| SspMI | CTAG | 6 cut(s) | 396, 530, 600, 666, 1781, 2696 |
| StuI | AGGCCT | 2 cut(s) | 1606, 1880 |
| StyI | CCWWGG | 6 cut(s) | 395, 1022, 1445, 1549, 1881, 2628 |
| TaaI | ACNGT | 7 cut(s) | 895, 1257, 1313, 1410, 1478, 1741, 1747 |
| TaiI | ACGT | 5 cut(s) | 54, 489, 515, 589, 1520 |
| TasI | AATT | 6 cut(s) | 879, 920, 1000, 1564, 2150, 2574 |
| TatI | WGTACW | 1 cut(s) | 544 |
| TfiI | GAWTC | 7 cut(s) | 401, 1010, 1198, 1784, 2212, 2225, 2546 |
| Tru1I | TTAA | 8 cut(s) | 224, 453, 498, 647, 992, 1104, 2208, 2325 |
| Tru9I | TTAA | 8 cut(s) | 224, 453, 498, 647, 992, 1104, 2208, 2325 |
| TscAI | CASTG | 2 cut(s) | 337, 1360 |
| TseFI | GTSAC | 7 cut(s) | 513, 850, 895, 1741, 1956, 2075, 2632 |
| Tsp45I | GTSAC | 7 cut(s) | 513, 850, 895, 1741, 1956, 2075, 2632 |
| TspDTI | ATGAA | 6 cut(s) | 17, 30, 933, 1683, 1863, 2721 |
| TspGWI | ACGGA | 5 cut(s) | 284, 414, 914, 1208, 2258 |
| TspRI | CASTG | 2 cut(s) | 337, 1360 |
| Tth111I | GACNNNGTC | 1 cut(s) | 488 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 558, 883, 2421 |
| VneI | GTGCAC | 1 cut(s) | 824 |
| VpaK11BI | GGWCC | 3 cut(s) | 38, 887, 2122 |
| VspI | ATTAAT | 1 cut(s) | 453 |
| XapI | RAATTY | 2 cut(s) | 879, 1000 |
| XbaI | TCTAGA | 1 cut(s) | 1780 |
| XceI | RCATGY | 2 cut(s) | 818, 2398 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1352, 2035, 2513 |
| XhoI | CTCGAG | 1 cut(s) | 2509 |
| XmaJI | CCTAGG | 1 cut(s) | 395 |
| XspI | CTAG | 6 cut(s) | 396, 530, 600, 666, 1781, 2696 |
| ZraI | GACGTC | 1 cut(s) | 487 |