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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 297, 1541 |
| AarI | CACCTGC | 1 cut(s) | 616 |
| Acc36I | ACCTGC | 1 cut(s) | 616 |
| Acc65I | GGTACC | 2 cut(s) | 736, 1532 |
| AccB1I | GGYRCC | 6 cut(s) | 21, 736, 1280, 1316, 1409, 1532 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1326 |
| AccBSI | CCGCTC | 5 cut(s) | 284, 946, 1021, 1099, 1416 |
| AccI | GTMKAC | 1 cut(s) | 771 |
| AccII | CGCG | 4 cut(s) | 309, 339, 1062, 1379 |
| AclWI | GGATC | 6 cut(s) | 328, 341, 524, 537, 1155, 1174 |
| AcoI | YGGCCR | 3 cut(s) | 1008, 1268, 1509 |
| AcsI | RAATTY | 3 cut(s) | 154, 266, 1193 |
| AcuI | CTGAAG | 4 cut(s) | 235, 1163, 1169, 1425 |
| AcyI | GRCGYC | 4 cut(s) | 22, 137, 563, 1317 |
| AfaI | GTAC | 2 cut(s) | 738, 1534 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 130, 133, 1277, 1326, 1563, 1610 |
| AgsI | TTSAA | 1 cut(s) | 857 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 613, 1581 |
| AjiI | CACGTC | 2 cut(s) | 775, 1093 |
| AjnI | CCWGG | 4 cut(s) | 129, 219, 224, 936 |
| AluBI | AGCT | 8 cut(s) | 145, 394, 635, 873, 952, 985, 1069, 1120 |
| AluI | AGCT | 8 cut(s) | 145, 394, 635, 873, 952, 985, 1069, 1120 |
| Alw21I | GWGCWC | 1 cut(s) | 843 |
| Alw26I | GTCTC | 6 cut(s) | 554, 655, 977, 986, 1117, 1495 |
| AlwI | GGATC | 6 cut(s) | 328, 341, 524, 537, 1155, 1174 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 937 |
| AoxI | GGCC | 7 cut(s) | 222, 786, 1008, 1164, 1268, 1352, 1509 |
| ApoI | RAATTY | 3 cut(s) | 154, 266, 1193 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 146 |
| Asp718I | GGTACC | 2 cut(s) | 736, 1532 |
| AspLEI | GCGC | 5 cut(s) | 24, 661, 1026, 1319, 1499 |
| AspS9I | GGNCC | 5 cut(s) | 41, 228, 457, 1352, 1566 |
| AsuHPI | GGTGA | 2 cut(s) | 855, 1439 |
| AsuII | TTCGAA | 1 cut(s) | 150 |
| AvaII | GGWCC | 4 cut(s) | 41, 228, 457, 1566 |
| AxyI | CCTNAGG | 1 cut(s) | 1635 |
| BaeGI | GKGCMC | 2 cut(s) | 888, 1414 |
| BamHI | GGATCC | 2 cut(s) | 333, 529 |
| BanI | GGYRCC | 6 cut(s) | 21, 736, 1280, 1316, 1409, 1532 |
| BanII | GRGCYC | 1 cut(s) | 424 |
| BauI | CACGAG | 1 cut(s) | 417 |
| Bbv12I | GWGCWC | 1 cut(s) | 843 |
| BbvCI | CCTCAGC | 1 cut(s) | 1398 |
| BccI | CCATC | 2 cut(s) | 204, 230 |
| BceAI | ACGGC | 2 cut(s) | 625, 1339 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 694, 728 |
| BciT130I | CCWGG | 4 cut(s) | 131, 221, 226, 938 |
| BciVI | GTATCC | 1 cut(s) | 790 |
| BcoDI | GTCTC | 6 cut(s) | 554, 655, 977, 986, 1117, 1495 |
| BfaI | CTAG | 3 cut(s) | 429, 1121, 1560 |
| BfmI | CTRYAG | 3 cut(s) | 868, 1347, 1485 |
| BfoI | RGCGCY | 3 cut(s) | 25, 1027, 1320 |
| BfuAI | ACCTGC | 1 cut(s) | 616 |
| BfuI | GTATCC | 1 cut(s) | 790 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 609, 1351, 1637 |
| BlpI | GCTNAGC | 1 cut(s) | 874 |
| Bme1390I | CCNGG | 4 cut(s) | 131, 221, 226, 938 |
| Bme18I | GGWCC | 4 cut(s) | 41, 228, 457, 1566 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 613, 1581 |
| BmgBI | CACGTC | 2 cut(s) | 775, 1093 |
| BmgT120I | GGNCC | 5 cut(s) | 41, 228, 457, 1352, 1566 |
| BmrFI | CCNGG | 4 cut(s) | 131, 221, 226, 938 |
| BmrI | ACTGGG | 1 cut(s) | 761 |
| BmsI | GCATC | 8 cut(s) | 48, 89, 570, 672, 1003, 1036, 1045, 1346 |
| BmuI | ACTGGG | 1 cut(s) | 761 |
| BpmI | CTGGAG | 4 cut(s) | 503, 848, 959, 1247 |
| Bpu10I | CCTNAGC | 3 cut(s) | 953, 1398, 1417 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 874 |
| Bpu14I | TTCGAA | 1 cut(s) | 150 |
| BsaAI | YACGTR | 1 cut(s) | 696 |
| BsaHI | GRCGYC | 4 cut(s) | 22, 137, 563, 1317 |
| BsaI | GGTCTC | 2 cut(s) | 977, 986 |
| BsaJI | CCNNGG | 9 cut(s) | 130, 337, 453, 618, 936, 996, 1032, 1060, 1284 |
| BsaWI | WCCGGW | 1 cut(s) | 1444 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 476, 506, 1097, 1127 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 130, 133, 1277, 1326, 1563, 1610 |
| Bse118I | RCCGGY | 1 cut(s) | 719 |
| Bse1I | ACTGG | 6 cut(s) | 182, 553, 566, 662, 767, 1242 |
| Bse21I | CCTNAGG | 1 cut(s) | 1635 |
| Bse3DI | GCAATG | 1 cut(s) | 652 |
| BseBI | CCWGG | 4 cut(s) | 131, 221, 226, 938 |
| BseDI | CCNNGG | 9 cut(s) | 130, 337, 453, 618, 936, 996, 1032, 1060, 1284 |
| BseGI | GGATG | 6 cut(s) | 104, 215, 687, 1237, 1337, 1390 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 130, 133, 1277, 1326, 1563, 1610 |
| BseMI | GCAATG | 1 cut(s) | 652 |
| BseMII | CTCAG | 8 cut(s) | 17, 110, 888, 967, 1389, 1431, 1472, 1493 |
| BseNI | ACTGG | 6 cut(s) | 182, 553, 566, 662, 767, 1242 |
| BseRI | GAGGAG | 1 cut(s) | 329 |
| BseSI | GKGCMC | 2 cut(s) | 888, 1414 |
| BseX3I | CGGCCG | 1 cut(s) | 1268 |
| BseYI | CCCAGC | 1 cut(s) | 1341 |
| BsgI | GTGCAG | 2 cut(s) | 644, 686 |
| Bsh1236I | CGCG | 4 cut(s) | 309, 339, 1062, 1379 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1271 |
| BshFI | GGCC | 7 cut(s) | 224, 788, 1010, 1166, 1270, 1354, 1511 |
| BshNI | GGYRCC | 6 cut(s) | 21, 736, 1280, 1316, 1409, 1532 |
| BsiEI | CGRYCG | 1 cut(s) | 1271 |
| BsiHKAI | GWGCWC | 1 cut(s) | 843 |
| BsiSI | CCGG | 2 cut(s) | 720, 1445 |
| BslFI | GGGAC | 4 cut(s) | 27, 199, 768, 1103 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 130, 133, 1277, 1326, 1563, 1610 |
| BsmAI | GTCTC | 6 cut(s) | 554, 655, 977, 986, 1117, 1495 |
| BsmBI | CGTCTC | 1 cut(s) | 554 |
| BsmFI | GGGAC | 4 cut(s) | 27, 199, 768, 1103 |
| BsmI | GAATGC | 3 cut(s) | 454, 705, 1372 |
| BsnI | GGCC | 7 cut(s) | 224, 788, 1010, 1166, 1270, 1354, 1511 |
| Bso31I | GGTCTC | 2 cut(s) | 977, 986 |
| Bsp119I | TTCGAA | 1 cut(s) | 150 |
| Bsp1286I | GDGCHC | 4 cut(s) | 424, 843, 888, 1414 |
| Bsp143I | GATC | 6 cut(s) | 333, 403, 468, 529, 1147, 1179 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 874 |
| Bsp19I | CCATGG | 3 cut(s) | 453, 618, 1284 |
| Bsp68I | TCGCGA | 1 cut(s) | 309 |
| BspANI | GGCC | 7 cut(s) | 224, 788, 1010, 1166, 1270, 1354, 1511 |
| BspCNI | CTCAG | 8 cut(s) | 18, 111, 887, 966, 1390, 1430, 1471, 1492 |
| BspFNI | CGCG | 4 cut(s) | 309, 339, 1062, 1379 |
| BspMAI | CTGCAG | 1 cut(s) | 1351 |
| BspMI | ACCTGC | 1 cut(s) | 616 |
| BspPI | GGATC | 6 cut(s) | 328, 341, 524, 537, 1155, 1174 |
| BspT104I | TTCGAA | 1 cut(s) | 150 |
| BspT107I | GGYRCC | 6 cut(s) | 21, 736, 1280, 1316, 1409, 1532 |
| BspTNI | GGTCTC | 2 cut(s) | 977, 986 |
| BsrBI | CCGCTC | 5 cut(s) | 284, 946, 1021, 1099, 1416 |
| BsrDI | GCAATG | 1 cut(s) | 652 |
| BsrFI | RCCGGY | 1 cut(s) | 719 |
| BsrI | ACTGG | 6 cut(s) | 182, 553, 566, 662, 767, 1242 |
| BssAI | RCCGGY | 1 cut(s) | 719 |
| BssECI | CCNNGG | 9 cut(s) | 130, 337, 453, 618, 936, 996, 1032, 1060, 1284 |
| BssMI | GATC | 6 cut(s) | 333, 403, 468, 529, 1147, 1179 |
| BssNI | GRCGYC | 4 cut(s) | 22, 137, 563, 1317 |
| BssSI | CACGAG | 1 cut(s) | 417 |
| BssT1I | CCWWGG | 5 cut(s) | 453, 618, 996, 1032, 1284 |
| Bst2BI | CACGAG | 1 cut(s) | 417 |
| Bst2UI | CCWGG | 4 cut(s) | 131, 221, 226, 938 |
| Bst4CI | ACNGT | 8 cut(s) | 49, 205, 356, 411, 523, 861, 1004, 1532 |
| Bst6I | CTCTTC | 1 cut(s) | 306 |
| BstACI | GRCGYC | 4 cut(s) | 22, 137, 563, 1317 |
| BstBAI | YACGTR | 1 cut(s) | 696 |
| BstBI | TTCGAA | 1 cut(s) | 150 |
| BstDSI | CCRYGG | 5 cut(s) | 337, 453, 618, 1060, 1284 |
| BstF5I | GGATG | 6 cut(s) | 104, 215, 687, 1237, 1337, 1390 |
| BstFNI | CGCG | 4 cut(s) | 309, 339, 1062, 1379 |
| BstH2I | RGCGCY | 3 cut(s) | 25, 1027, 1320 |
| BstHHI | GCGC | 5 cut(s) | 24, 661, 1026, 1319, 1499 |
| BstKTI | GATC | 6 cut(s) | 336, 406, 471, 532, 1150, 1182 |
| BstMAI | GTCTC | 6 cut(s) | 554, 655, 977, 986, 1117, 1495 |
| BstMBI | GATC | 6 cut(s) | 333, 403, 468, 529, 1147, 1179 |
| BstMCI | CGRYCG | 1 cut(s) | 1271 |
| BstNI | CCWGG | 4 cut(s) | 131, 221, 226, 938 |
| BstSCI | CCNGG | 4 cut(s) | 129, 219, 224, 936 |
| BstSFI | CTRYAG | 3 cut(s) | 868, 1347, 1485 |
| BstSLI | GKGCMC | 2 cut(s) | 888, 1414 |
| BstSNI | TACGTA | 1 cut(s) | 696 |
| BstUI | CGCG | 4 cut(s) | 309, 339, 1062, 1379 |
| BstX2I | RGATCY | 3 cut(s) | 333, 529, 1179 |
| BstYI | RGATCY | 3 cut(s) | 333, 529, 1179 |
| BstZI | CGGCCG | 1 cut(s) | 1268 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1635 |
| BsuI | GTATCC | 1 cut(s) | 790 |
| BsuRI | GGCC | 7 cut(s) | 224, 788, 1010, 1166, 1270, 1354, 1511 |
| BtgI | CCRYGG | 5 cut(s) | 337, 453, 618, 1060, 1284 |
| BtrI | CACGTC | 2 cut(s) | 775, 1093 |
| BtsCI | GGATG | 6 cut(s) | 104, 215, 687, 1237, 1337, 1390 |
| BtsI | GCAGTG | 1 cut(s) | 1370 |
| BtsIMutI | CAGTG | 6 cut(s) | 45, 175, 201, 573, 669, 1370 |
| BtuMI | TCGCGA | 1 cut(s) | 309 |
| BveI | ACCTGC | 1 cut(s) | 616 |
| CaiI | CAGNNNCTG | 1 cut(s) | 937 |
| CfoI | GCGC | 5 cut(s) | 24, 661, 1026, 1319, 1499 |
| Cfr10I | RCCGGY | 1 cut(s) | 719 |
| Cfr13I | GGNCC | 5 cut(s) | 41, 228, 457, 1352, 1566 |
| Cfr42I | CCGCGG | 2 cut(s) | 340, 1063 |
| CseI | GACGC | 3 cut(s) | 80, 126, 571 |
| Csp6I | GTAC | 2 cut(s) | 737, 1533 |
| CviQI | GTAC | 2 cut(s) | 737, 1533 |
| DinI | GGCGCC | 2 cut(s) | 23, 1318 |
| DpnI | GATC | 6 cut(s) | 335, 405, 470, 531, 1149, 1181 |
| DpnII | GATC | 6 cut(s) | 333, 403, 468, 529, 1147, 1179 |
| DraI | TTTAAA | 1 cut(s) | 159 |
| DriI | GACNNNNNGTC | 2 cut(s) | 613, 1581 |
| EaeI | YGGCCR | 3 cut(s) | 1008, 1268, 1509 |
| EagI | CGGCCG | 1 cut(s) | 1268 |
| Eam1104I | CTCTTC | 1 cut(s) | 306 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 613, 1581 |
| EarI | CTCTTC | 1 cut(s) | 306 |
| EciI | GGCGGA | 1 cut(s) | 1004 |
| EclXI | CGGCCG | 1 cut(s) | 1268 |
| Eco105I | TACGTA | 1 cut(s) | 696 |
| Eco130I | CCWWGG | 5 cut(s) | 453, 618, 996, 1032, 1284 |
| Eco24I | GRGCYC | 1 cut(s) | 424 |
| Eco31I | GGTCTC | 2 cut(s) | 977, 986 |
| Eco47I | GGWCC | 4 cut(s) | 41, 228, 457, 1566 |
| Eco52I | CGGCCG | 1 cut(s) | 1268 |
| Eco57I | CTGAAG | 4 cut(s) | 235, 1163, 1169, 1425 |
| Eco81I | CCTNAGG | 1 cut(s) | 1635 |
| EcoO109I | RGGNCCY | 1 cut(s) | 41 |
| EcoRI | GAATTC | 1 cut(s) | 266 |
| EcoRII | CCWGG | 4 cut(s) | 129, 219, 224, 936 |
| EcoT14I | CCWWGG | 5 cut(s) | 453, 618, 996, 1032, 1284 |
| EcoT38I | GRGCYC | 1 cut(s) | 424 |
| EgeI | GGCGCC | 2 cut(s) | 23, 1318 |
| EheI | GGCGCC | 2 cut(s) | 23, 1318 |
| ErhI | CCWWGG | 5 cut(s) | 453, 618, 996, 1032, 1284 |
| Esp3I | CGTCTC | 1 cut(s) | 554 |
| FaqI | GGGAC | 4 cut(s) | 27, 199, 768, 1103 |
| FauI | CCCGC | 9 cut(s) | 277, 744, 815, 1067, 1080, 1270, 1384, 1402, 1421 |
| FblI | GTMKAC | 1 cut(s) | 771 |
| FokI | GGATG | 6 cut(s) | 111, 222, 694, 1244, 1324, 1397 |
| FriOI | GRGCYC | 1 cut(s) | 424 |
| FspBI | CTAG | 3 cut(s) | 429, 1121, 1560 |
| GlaI | GCGC | 5 cut(s) | 23, 660, 1025, 1318, 1498 |
| GsaI | CCCAGC | 1 cut(s) | 1345 |
| GsuI | CTGGAG | 4 cut(s) | 503, 848, 959, 1247 |
| HaeII | RGCGCY | 3 cut(s) | 25, 1027, 1320 |
| HaeIII | GGCC | 7 cut(s) | 224, 788, 1010, 1166, 1270, 1354, 1511 |
| HapII | CCGG | 2 cut(s) | 720, 1445 |
| HgaI | GACGC | 3 cut(s) | 80, 126, 571 |
| HhaI | GCGC | 5 cut(s) | 24, 661, 1026, 1319, 1499 |
| Hin1I | GRCGYC | 4 cut(s) | 22, 137, 563, 1317 |
| Hin6I | GCGC | 5 cut(s) | 22, 659, 1024, 1317, 1497 |
| HinP1I | GCGC | 5 cut(s) | 22, 659, 1024, 1317, 1497 |
| HincII | GTYRAC | 2 cut(s) | 414, 772 |
| HindII | GTYRAC | 2 cut(s) | 414, 772 |
| HinfI | GANTC | 7 cut(s) | 115, 164, 304, 834, 1454, 1549, 1579 |
| HpaII | CCGG | 2 cut(s) | 720, 1445 |
| HphI | GGTGA | 2 cut(s) | 855, 1439 |
| Hpy166II | GTNNAC | 3 cut(s) | 414, 772, 778 |
| Hpy188I | TCNGA | 9 cut(s) | 120, 209, 265, 281, 303, 559, 1365, 1570, 1591 |
| Hpy188III | TCNNGA | 7 cut(s) | 253, 308, 434, 445, 482, 533, 976 |
| Hpy8I | GTNNAC | 3 cut(s) | 414, 772, 778 |
| Hpy99I | CGWCG | 3 cut(s) | 142, 611, 776 |
| HpyAV | CCTTC | 8 cut(s) | 259, 667, 889, 1138, 1193, 1267, 1400, 1482 |
| HpyCH4III | ACNGT | 8 cut(s) | 49, 205, 356, 411, 523, 861, 1004, 1532 |
| HpyCH4IV | ACGT | 3 cut(s) | 695, 774, 1092 |
| HpyCH4V | TGCA | 6 cut(s) | 102, 109, 625, 667, 1349, 1370 |
| HpySE526I | ACGT | 3 cut(s) | 695, 774, 1092 |
| Hsp92I | GRCGYC | 4 cut(s) | 22, 137, 563, 1317 |
| HspAI | GCGC | 5 cut(s) | 22, 659, 1024, 1317, 1497 |
| KasI | GGCGCC | 2 cut(s) | 21, 1316 |
| KflI | GGGWCCC | 1 cut(s) | 41 |
| KpnI | GGTACC | 2 cut(s) | 740, 1536 |
| KspI | CCGCGG | 2 cut(s) | 340, 1063 |
| Kzo9I | GATC | 6 cut(s) | 333, 403, 468, 529, 1147, 1179 |
| LmnI | GCTCC | 6 cut(s) | 391, 632, 943, 982, 1018, 1096 |
| LweI | GCATC | 8 cut(s) | 48, 89, 570, 672, 1003, 1036, 1045, 1346 |
| MaeI | CTAG | 3 cut(s) | 429, 1121, 1560 |
| MaeII | ACGT | 3 cut(s) | 695, 774, 1092 |
| MaeIII | GTNAC | 3 cut(s) | 356, 724, 861 |
| MalI | GATC | 6 cut(s) | 335, 405, 470, 531, 1149, 1181 |
| MbiI | CCGCTC | 5 cut(s) | 284, 946, 1021, 1099, 1416 |
| MboI | GATC | 6 cut(s) | 333, 403, 468, 529, 1147, 1179 |
| MboII | GAAGA | 2 cut(s) | 323, 1463 |
| MflI | RGATCY | 3 cut(s) | 333, 529, 1179 |
| MhlI | GDGCHC | 4 cut(s) | 424, 843, 888, 1414 |
| MluCI | AATT | 4 cut(s) | 154, 266, 475, 1193 |
| Mly113I | GGCGCC | 2 cut(s) | 22, 1317 |
| MlyI | GAGTC | 2 cut(s) | 1558, 1588 |
| MmeI | TCCRAC | 4 cut(s) | 187, 255, 295, 1593 |
| MroXI | GAANNNNTTC | 1 cut(s) | 146 |
| MseI | TTAA | 3 cut(s) | 158, 258, 1218 |
| MspA1I | CMGCKG | 7 cut(s) | 339, 822, 1052, 1062, 1189, 1397, 1462 |
| MspI | CCGG | 2 cut(s) | 720, 1445 |
| MspR9I | CCNGG | 4 cut(s) | 131, 221, 226, 938 |
| Mva1269I | GAATGC | 3 cut(s) | 454, 705, 1372 |
| MvaI | CCWGG | 4 cut(s) | 131, 221, 226, 938 |
| MvnI | CGCG | 4 cut(s) | 309, 339, 1062, 1379 |
| NarI | GGCGCC | 2 cut(s) | 22, 1317 |
| NcoI | CCATGG | 3 cut(s) | 453, 618, 1284 |
| NdeII | GATC | 6 cut(s) | 333, 403, 468, 529, 1147, 1179 |
| NmeAIII | GCCGAG | 1 cut(s) | 1572 |
| NmuCI | GTSAC | 2 cut(s) | 724, 861 |
| NruI | TCGCGA | 1 cut(s) | 309 |
| NspV | TTCGAA | 1 cut(s) | 150 |
| PaqCI | CACCTGC | 1 cut(s) | 616 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 768, 777, 786 |
| PctI | GAATGC | 3 cut(s) | 454, 705, 1372 |
| PdmI | GAANNNNTTC | 1 cut(s) | 146 |
| PfeI | GAWTC | 5 cut(s) | 115, 164, 304, 834, 1454 |
| PflFI | GACNNNGTC | 2 cut(s) | 767, 1109 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1326 |
| PleI | GAGTC | 2 cut(s) | 1557, 1587 |
| PluTI | GGCGCC | 2 cut(s) | 25, 1320 |
| PpsI | GAGTC | 2 cut(s) | 1557, 1587 |
| Ppu21I | YACGTR | 1 cut(s) | 696 |
| PpuMI | RGGWCCY | 1 cut(s) | 41 |
| PsiI | TTATAA | 2 cut(s) | 297, 1541 |
| Psp5II | RGGWCCY | 1 cut(s) | 41 |
| Psp6I | CCWGG | 4 cut(s) | 129, 219, 224, 936 |
| PspFI | CCCAGC | 1 cut(s) | 1341 |
| PspGI | CCWGG | 4 cut(s) | 129, 219, 224, 936 |
| PspPI | GGNCC | 5 cut(s) | 41, 228, 457, 1352, 1566 |
| PspPPI | RGGWCCY | 1 cut(s) | 41 |
| PstI | CTGCAG | 1 cut(s) | 1351 |
| PstNI | CAGNNNCTG | 1 cut(s) | 937 |
| PsuI | RGATCY | 3 cut(s) | 333, 529, 1179 |
| PsyI | GACNNNGTC | 2 cut(s) | 767, 1109 |
| RruI | TCGCGA | 1 cut(s) | 309 |
| RsaI | GTAC | 2 cut(s) | 738, 1534 |
| RsaNI | GTAC | 2 cut(s) | 737, 1533 |
| SacII | CCGCGG | 2 cut(s) | 340, 1063 |
| SalI | GTCGAC | 1 cut(s) | 770 |
| SaqAI | TTAA | 3 cut(s) | 158, 258, 1218 |
| Sau3AI | GATC | 6 cut(s) | 333, 403, 468, 529, 1147, 1179 |
| Sau96I | GGNCC | 5 cut(s) | 41, 228, 457, 1352, 1566 |
| SbfI | CCTGCAGG | 1 cut(s) | 1351 |
| SchI | GAGTC | 2 cut(s) | 1558, 1588 |
| ScrFI | CCNGG | 4 cut(s) | 131, 221, 226, 938 |
| SdaI | CCTGCAGG | 1 cut(s) | 1351 |
| SduI | GDGCHC | 4 cut(s) | 424, 843, 888, 1414 |
| SfaNI | GCATC | 8 cut(s) | 48, 89, 570, 672, 1003, 1036, 1045, 1346 |
| SfcI | CTRYAG | 3 cut(s) | 868, 1347, 1485 |
| SfoI | GGCGCC | 2 cut(s) | 23, 1318 |
| Sfr303I | CCGCGG | 2 cut(s) | 340, 1063 |
| SfuI | TTCGAA | 1 cut(s) | 150 |
| SgrAI | CRCCGGYG | 1 cut(s) | 719 |
| SgrBI | CCGCGG | 2 cut(s) | 340, 1063 |
| SinI | GGWCC | 4 cut(s) | 41, 228, 457, 1566 |
| SnaBI | TACGTA | 1 cut(s) | 696 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1351 |
| Sse9I | AATT | 4 cut(s) | 154, 266, 475, 1193 |
| SspDI | GGCGCC | 2 cut(s) | 21, 1316 |
| SspMI | CTAG | 3 cut(s) | 429, 1121, 1560 |
| StyD4I | CCNGG | 4 cut(s) | 129, 219, 224, 936 |
| StyI | CCWWGG | 5 cut(s) | 453, 618, 996, 1032, 1284 |
| TaaI | ACNGT | 8 cut(s) | 49, 205, 356, 411, 523, 861, 1004, 1532 |
| TaiI | ACGT | 3 cut(s) | 698, 777, 1095 |
| TaqI | TCGA | 5 cut(s) | 140, 150, 402, 444, 771 |
| TasI | AATT | 4 cut(s) | 154, 266, 475, 1193 |
| TfiI | GAWTC | 5 cut(s) | 115, 164, 304, 834, 1454 |
| Tru1I | TTAA | 3 cut(s) | 158, 258, 1218 |
| Tru9I | TTAA | 3 cut(s) | 158, 258, 1218 |
| TscAI | CASTG | 6 cut(s) | 52, 182, 208, 573, 669, 1377 |
| TseFI | GTSAC | 2 cut(s) | 724, 861 |
| Tsp45I | GTSAC | 2 cut(s) | 724, 861 |
| TspGWI | ACGGA | 1 cut(s) | 883 |
| TspRI | CASTG | 6 cut(s) | 52, 182, 208, 573, 669, 1377 |
| Tth111I | GACNNNGTC | 2 cut(s) | 767, 1109 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1326 |
| VpaK11BI | GGWCC | 4 cut(s) | 41, 228, 457, 1566 |
| XapI | RAATTY | 3 cut(s) | 154, 266, 1193 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 625, 808, 934, 1003, 1291 |
| XmiI | GTMKAC | 1 cut(s) | 771 |
| XmnI | GAANNNNTTC | 1 cut(s) | 146 |
| XspI | CTAG | 3 cut(s) | 429, 1121, 1560 |