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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 1244, 1367 |
| AccB1I | GGYRCC | 4 cut(s) | 885, 1151, 1244, 1367 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 673, 1161 |
| AccBSI | CCGCTC | 5 cut(s) | 643, 883, 961, 1142, 1361 |
| AccII | CGCG | 2 cut(s) | 808, 949 |
| AclWI | GGATC | 2 cut(s) | 1017, 1036 |
| AcoI | YGGCCR | 3 cut(s) | 119, 870, 1344 |
| AcsI | RAATTY | 1 cut(s) | 623 |
| AcuI | CTGAAG | 4 cut(s) | 461, 821, 1025, 1031 |
| AcyI | GRCGYC | 4 cut(s) | 886, 1133, 1152, 1172 |
| AfaI | GTAC | 4 cut(s) | 340, 702, 1246, 1369 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 159, 673, 895, 948, 1006, 1051, 1161, 1217 |
| AflIII | ACRYGT | 1 cut(s) | 466 |
| AgsI | TTSAA | 2 cut(s) | 140, 556 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1416 |
| AjiI | CACGTC | 2 cut(s) | 955, 1208 |
| AjnI | CCWGG | 4 cut(s) | 116, 158, 320, 412 |
| AluBI | AGCT | 8 cut(s) | 247, 427, 572, 661, 735, 814, 931, 1394 |
| AluI | AGCT | 8 cut(s) | 247, 427, 572, 661, 735, 814, 931, 1394 |
| Alw21I | GWGCWC | 1 cut(s) | 663 |
| Alw26I | GTCTC | 3 cut(s) | 979, 1330, 1445 |
| AlwI | GGATC | 2 cut(s) | 1017, 1036 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 673 |
| Ama87I | CYCGRG | 3 cut(s) | 22, 798, 1356 |
| AoxI | GGCC | 6 cut(s) | 119, 362, 575, 738, 870, 1344 |
| ApeKI | GCWGC | 4 cut(s) | 427, 782, 811, 1061 |
| ApoI | RAATTY | 1 cut(s) | 623 |
| Asp718I | GGTACC | 2 cut(s) | 1244, 1367 |
| AspLEI | GCGC | 5 cut(s) | 505, 808, 888, 949, 1154 |
| AspS9I | GGNCC | 3 cut(s) | 362, 522, 575 |
| AsuC2I | CCSGG | 3 cut(s) | 40, 799, 800 |
| AsuHPI | GGTGA | 2 cut(s) | 41, 298 |
| AsuNHI | GCTAGC | 3 cut(s) | 5, 266, 296 |
| AvaI | CYCGRG | 3 cut(s) | 22, 798, 1356 |
| AvaII | GGWCC | 1 cut(s) | 522 |
| BaeGI | GKGCMC | 1 cut(s) | 750 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 330, 363, 1359, 1392 |
| BanI | GGYRCC | 4 cut(s) | 885, 1151, 1244, 1367 |
| BanII | GRGCYC | 1 cut(s) | 663 |
| BauI | CACGAG | 1 cut(s) | 1395 |
| BbsI | GAAGAC | 4 cut(s) | 179, 827, 860, 1293 |
| Bbv12I | GWGCWC | 1 cut(s) | 663 |
| BbvCI | CCTCAGC | 1 cut(s) | 1239 |
| BbvI | GCAGC | 4 cut(s) | 414, 794, 823, 1048 |
| BccI | CCATC | 4 cut(s) | 275, 625, 841, 1358 |
| BceAI | ACGGC | 2 cut(s) | 926, 1401 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1194, 1228 |
| BciT130I | CCWGG | 4 cut(s) | 118, 160, 322, 414 |
| BclI | TGATCA | 2 cut(s) | 718, 1405 |
| BcnI | CCSGG | 3 cut(s) | 40, 799, 800 |
| BcoDI | GTCTC | 3 cut(s) | 979, 1330, 1445 |
| BfaI | CTAG | 5 cut(s) | 6, 131, 267, 297, 983 |
| BfmI | CTRYAG | 3 cut(s) | 105, 682, 1389 |
| BfoI | RGCGCY | 3 cut(s) | 506, 889, 1155 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 414 |
| Bme1390I | CCNGG | 7 cut(s) | 40, 118, 160, 322, 414, 799, 800 |
| Bme18I | GGWCC | 1 cut(s) | 522 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1416 |
| BmeT110I | CYCGRG | 3 cut(s) | 22, 798, 1356 |
| BmgBI | CACGTC | 2 cut(s) | 955, 1208 |
| BmgT120I | GGNCC | 3 cut(s) | 362, 522, 575 |
| BmiI | GGNNCC | 8 cut(s) | 112, 126, 523, 636, 887, 1153, 1246, 1369 |
| BmrFI | CCNGG | 7 cut(s) | 40, 118, 160, 322, 414, 799, 800 |
| BmrI | ACTGGG | 1 cut(s) | 1171 |
| BmsI | GCATC | 7 cut(s) | 18, 205, 802, 865, 898, 907, 1453 |
| BmtI | GCTAGC | 3 cut(s) | 9, 270, 300 |
| BmuI | ACTGGG | 1 cut(s) | 1171 |
| BpiI | GAAGAC | 4 cut(s) | 179, 827, 860, 1293 |
| BpmI | CTGGAG | 3 cut(s) | 710, 1109, 1312 |
| Bpu10I | CCTNAGC | 4 cut(s) | 639, 815, 1074, 1239 |
| BpuMI | CCSGG | 3 cut(s) | 40, 799, 800 |
| BsaHI | GRCGYC | 4 cut(s) | 886, 1133, 1152, 1172 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 159, 673, 895, 948, 1006, 1051, 1161, 1217 |
| Bse118I | RCCGGY | 1 cut(s) | 182 |
| Bse1I | ACTGG | 2 cut(s) | 1166, 1329 |
| BseBI | CCWGG | 4 cut(s) | 118, 160, 322, 414 |
| BseGI | GGATG | 5 cut(s) | 220, 487, 793, 1099, 1369 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 159, 673, 895, 948, 1006, 1051, 1161, 1217 |
| BseMII | CTCAG | 6 cut(s) | 630, 829, 872, 1230, 1307, 1328 |
| BseNI | ACTGG | 2 cut(s) | 1166, 1329 |
| BseRI | GAGGAG | 2 cut(s) | 254, 836 |
| BseSI | GKGCMC | 1 cut(s) | 750 |
| BseXI | GCAGC | 4 cut(s) | 414, 794, 823, 1048 |
| BseYI | CCCAGC | 3 cut(s) | 572, 673, 1176 |
| BsgI | GTGCAG | 1 cut(s) | 605 |
| Bsh1236I | CGCG | 2 cut(s) | 808, 949 |
| BshFI | GGCC | 6 cut(s) | 121, 364, 577, 740, 872, 1346 |
| BshNI | GGYRCC | 4 cut(s) | 885, 1151, 1244, 1367 |
| BsiHKAI | GWGCWC | 1 cut(s) | 663 |
| BsiHKCI | CYCGRG | 3 cut(s) | 22, 798, 1356 |
| BsiSI | CCGG | 5 cut(s) | 39, 122, 183, 578, 799 |
| BsiWI | CGTACG | 1 cut(s) | 700 |
| BslFI | GGGAC | 3 cut(s) | 965, 1159, 1194 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 159, 673, 895, 948, 1006, 1051, 1161, 1217 |
| BsmAI | GTCTC | 3 cut(s) | 979, 1330, 1445 |
| BsmFI | GGGAC | 3 cut(s) | 965, 1159, 1194 |
| BsnI | GGCC | 6 cut(s) | 121, 364, 577, 740, 872, 1346 |
| BsoBI | CYCGRG | 3 cut(s) | 22, 798, 1356 |
| Bsp1286I | GDGCHC | 2 cut(s) | 663, 750 |
| Bsp143I | GATC | 5 cut(s) | 718, 825, 1009, 1041, 1405 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspANI | GGCC | 6 cut(s) | 121, 364, 577, 740, 872, 1346 |
| BspCNI | CTCAG | 6 cut(s) | 631, 828, 871, 1231, 1306, 1327 |
| BspFNI | CGCG | 2 cut(s) | 808, 949 |
| BspLI | GGNNCC | 8 cut(s) | 112, 126, 523, 636, 887, 1153, 1246, 1369 |
| BspMAI | CTGCAG | 2 cut(s) | 109, 686 |
| BspOI | GCTAGC | 3 cut(s) | 9, 270, 300 |
| BspPI | GGATC | 2 cut(s) | 1017, 1036 |
| BspT107I | GGYRCC | 4 cut(s) | 885, 1151, 1244, 1367 |
| BsrBI | CCGCTC | 5 cut(s) | 643, 883, 961, 1142, 1361 |
| BsrFI | RCCGGY | 1 cut(s) | 182 |
| BsrI | ACTGG | 2 cut(s) | 1166, 1329 |
| BssAI | RCCGGY | 1 cut(s) | 182 |
| BssMI | GATC | 5 cut(s) | 718, 825, 1009, 1041, 1405 |
| BssNI | GRCGYC | 4 cut(s) | 886, 1133, 1152, 1172 |
| BssSI | CACGAG | 1 cut(s) | 1395 |
| BssT1I | CCWWGG | 2 cut(s) | 171, 894 |
| Bst2BI | CACGAG | 1 cut(s) | 1395 |
| Bst2UI | CCWGG | 4 cut(s) | 118, 160, 322, 414 |
| Bst4CI | ACNGT | 7 cut(s) | 338, 373, 389, 435, 530, 565, 866 |
| Bst6I | CTCTTC | 1 cut(s) | 300 |
| BstACI | GRCGYC | 4 cut(s) | 886, 1133, 1152, 1172 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 436 |
| BstDSI | CCRYGG | 4 cut(s) | 171, 372, 529, 922 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 893, 1004 |
| BstF5I | GGATG | 5 cut(s) | 220, 487, 793, 1099, 1369 |
| BstFNI | CGCG | 2 cut(s) | 808, 949 |
| BstH2I | RGCGCY | 3 cut(s) | 506, 889, 1155 |
| BstHHI | GCGC | 5 cut(s) | 505, 808, 888, 949, 1154 |
| BstKTI | GATC | 5 cut(s) | 721, 828, 1012, 1044, 1408 |
| BstMAI | GTCTC | 3 cut(s) | 979, 1330, 1445 |
| BstMBI | GATC | 5 cut(s) | 718, 825, 1009, 1041, 1405 |
| BstNI | CCWGG | 4 cut(s) | 118, 160, 322, 414 |
| BstNSI | RCATGY | 1 cut(s) | 470 |
| BstSCI | CCNGG | 7 cut(s) | 38, 116, 158, 320, 412, 797, 798 |
| BstSFI | CTRYAG | 3 cut(s) | 105, 682, 1389 |
| BstSLI | GKGCMC | 1 cut(s) | 750 |
| BstUI | CGCG | 2 cut(s) | 808, 949 |
| BstV1I | GCAGC | 4 cut(s) | 414, 794, 823, 1048 |
| BstV2I | GAAGAC | 4 cut(s) | 179, 827, 860, 1293 |
| BstX2I | RGATCY | 1 cut(s) | 1041 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 469, 1184 |
| BstYI | RGATCY | 1 cut(s) | 1041 |
| BsuRI | GGCC | 6 cut(s) | 121, 364, 577, 740, 872, 1346 |
| BtgI | CCRYGG | 4 cut(s) | 171, 372, 529, 922 |
| BtrI | CACGTC | 2 cut(s) | 955, 1208 |
| BtsCI | GGATG | 5 cut(s) | 220, 487, 793, 1099, 1369 |
| BtsIMutI | CAGTG | 1 cut(s) | 1336 |
| CaiI | CAGNNNCTG | 1 cut(s) | 673 |
| CfoI | GCGC | 5 cut(s) | 505, 808, 888, 949, 1154 |
| Cfr10I | RCCGGY | 1 cut(s) | 182 |
| Cfr13I | GGNCC | 3 cut(s) | 362, 522, 575 |
| Cfr9I | CCCGGG | 1 cut(s) | 798 |
| CseI | GACGC | 3 cut(s) | 494, 1122, 1161 |
| Csp6I | GTAC | 4 cut(s) | 339, 701, 1245, 1368 |
| CviAII | CATG | 4 cut(s) | 172, 467, 767, 971 |
| CviQI | GTAC | 4 cut(s) | 339, 701, 1245, 1368 |
| DinI | GGCGCC | 2 cut(s) | 887, 1153 |
| DpnI | GATC | 5 cut(s) | 720, 827, 1011, 1043, 1407 |
| DpnII | GATC | 5 cut(s) | 718, 825, 1009, 1041, 1405 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1416 |
| EaeI | YGGCCR | 3 cut(s) | 119, 870, 1344 |
| Eam1104I | CTCTTC | 1 cut(s) | 300 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1416 |
| EarI | CTCTTC | 1 cut(s) | 300 |
| EciI | GGCGGA | 2 cut(s) | 395, 1298 |
| Ecl136II | GAGCTC | 1 cut(s) | 661 |
| Eco130I | CCWWGG | 2 cut(s) | 171, 894 |
| Eco24I | GRGCYC | 1 cut(s) | 663 |
| Eco32I | GATATC | 1 cut(s) | 19 |
| Eco47I | GGWCC | 1 cut(s) | 522 |
| Eco53kI | GAGCTC | 1 cut(s) | 661 |
| Eco57I | CTGAAG | 4 cut(s) | 461, 821, 1025, 1031 |
| Eco88I | CYCGRG | 3 cut(s) | 22, 798, 1356 |
| EcoICRI | GAGCTC | 1 cut(s) | 661 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 893, 1004 |
| EcoO109I | RGGNCCY | 1 cut(s) | 362 |
| EcoRI | GAATTC | 1 cut(s) | 623 |
| EcoRII | CCWGG | 4 cut(s) | 116, 158, 320, 412 |
| EcoRV | GATATC | 1 cut(s) | 19 |
| EcoT14I | CCWWGG | 2 cut(s) | 171, 894 |
| EcoT38I | GRGCYC | 1 cut(s) | 663 |
| EgeI | GGCGCC | 2 cut(s) | 887, 1153 |
| EheI | GGCGCC | 2 cut(s) | 887, 1153 |
| ErhI | CCWWGG | 2 cut(s) | 171, 894 |
| FaeI | CATG | 4 cut(s) | 175, 470, 770, 974 |
| FaqI | GGGAC | 3 cut(s) | 965, 1159, 1194 |
| FatI | CATG | 4 cut(s) | 171, 466, 766, 970 |
| FauI | CCCGC | 7 cut(s) | 293, 390, 636, 942, 1044, 1253, 1311 |
| FauNDI | CATATG | 1 cut(s) | 616 |
| FbaI | TGATCA | 2 cut(s) | 718, 1405 |
| FokI | GGATG | 5 cut(s) | 227, 494, 780, 1106, 1376 |
| FriOI | GRGCYC | 1 cut(s) | 663 |
| FspBI | CTAG | 5 cut(s) | 6, 131, 267, 297, 983 |
| GlaI | GCGC | 5 cut(s) | 504, 807, 887, 948, 1153 |
| GsaI | CCCAGC | 3 cut(s) | 576, 677, 1180 |
| GsuI | CTGGAG | 3 cut(s) | 710, 1109, 1312 |
| HaeII | RGCGCY | 3 cut(s) | 506, 889, 1155 |
| HaeIII | GGCC | 6 cut(s) | 121, 364, 577, 740, 872, 1346 |
| HapII | CCGG | 5 cut(s) | 39, 122, 183, 578, 799 |
| HgaI | GACGC | 3 cut(s) | 494, 1122, 1161 |
| HhaI | GCGC | 5 cut(s) | 505, 808, 888, 949, 1154 |
| Hin1I | GRCGYC | 4 cut(s) | 886, 1133, 1152, 1172 |
| Hin1II | CATG | 4 cut(s) | 175, 470, 770, 974 |
| Hin6I | GCGC | 5 cut(s) | 503, 806, 886, 947, 1152 |
| HinP1I | GCGC | 5 cut(s) | 503, 806, 886, 947, 1152 |
| HincII | GTYRAC | 2 cut(s) | 349, 385 |
| HindII | GTYRAC | 2 cut(s) | 349, 385 |
| HinfI | GANTC | 8 cut(s) | 35, 83, 314, 602, 696, 856, 1055, 1289 |
| HpaII | CCGG | 5 cut(s) | 39, 122, 183, 578, 799 |
| HphI | GGTGA | 2 cut(s) | 41, 298 |
| Hpy166II | GTNNAC | 3 cut(s) | 349, 385, 1228 |
| Hpy188I | TCNGA | 8 cut(s) | 512, 840, 1200, 1321, 1405, 1410, 1426, 1444 |
| Hpy188III | TCNNGA | 3 cut(s) | 22, 628, 860 |
| Hpy8I | GTNNAC | 3 cut(s) | 349, 385, 1228 |
| HpyAV | CCTTC | 5 cut(s) | 530, 550, 751, 1000, 1055 |
| HpyCH4III | ACNGT | 7 cut(s) | 338, 373, 389, 435, 530, 565, 866 |
| HpyCH4IV | ACGT | 3 cut(s) | 60, 954, 1207 |
| HpyCH4V | TGCA | 4 cut(s) | 107, 430, 586, 684 |
| HpySE526I | ACGT | 3 cut(s) | 60, 954, 1207 |
| Hsp92I | GRCGYC | 4 cut(s) | 886, 1133, 1152, 1172 |
| Hsp92II | CATG | 4 cut(s) | 175, 470, 770, 974 |
| HspAI | GCGC | 5 cut(s) | 503, 806, 886, 947, 1152 |
| KasI | GGCGCC | 2 cut(s) | 885, 1151 |
| KpnI | GGTACC | 2 cut(s) | 1248, 1371 |
| Ksp22I | TGATCA | 2 cut(s) | 718, 1405 |
| Kzo9I | GATC | 5 cut(s) | 718, 825, 1009, 1041, 1405 |
| LmnI | GCTCC | 4 cut(s) | 634, 880, 958, 1112 |
| Lsp1109I | GCAGC | 4 cut(s) | 414, 794, 823, 1048 |
| LweI | GCATC | 7 cut(s) | 18, 205, 802, 865, 898, 907, 1453 |
| MaeI | CTAG | 5 cut(s) | 6, 131, 267, 297, 983 |
| MaeII | ACGT | 3 cut(s) | 60, 954, 1207 |
| MaeIII | GTNAC | 3 cut(s) | 332, 565, 1375 |
| MalI | GATC | 5 cut(s) | 720, 827, 1011, 1043, 1407 |
| MbiI | CCGCTC | 5 cut(s) | 643, 883, 961, 1142, 1361 |
| MboI | GATC | 5 cut(s) | 718, 825, 1009, 1041, 1405 |
| MboII | GAAGA | 7 cut(s) | 179, 317, 454, 646, 827, 865, 1298 |
| MflI | RGATCY | 1 cut(s) | 1041 |
| MhlI | GDGCHC | 2 cut(s) | 663, 750 |
| MluCI | AATT | 3 cut(s) | 256, 550, 623 |
| Mly113I | GGCGCC | 2 cut(s) | 886, 1152 |
| MlyI | GAGTC | 3 cut(s) | 323, 850, 1283 |
| MmeI | TCCRAC | 1 cut(s) | 549 |
| MseI | TTAA | 2 cut(s) | 542, 1158 |
| MspA1I | CMGCKG | 4 cut(s) | 572, 670, 914, 1051 |
| MspI | CCGG | 5 cut(s) | 39, 122, 183, 578, 799 |
| MspR9I | CCNGG | 7 cut(s) | 40, 118, 160, 322, 414, 799, 800 |
| MvaI | CCWGG | 4 cut(s) | 118, 160, 322, 414 |
| MvnI | CGCG | 2 cut(s) | 808, 949 |
| NarI | GGCGCC | 2 cut(s) | 886, 1152 |
| NciI | CCSGG | 3 cut(s) | 40, 799, 800 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeI | CATATG | 1 cut(s) | 616 |
| NdeII | GATC | 5 cut(s) | 718, 825, 1009, 1041, 1405 |
| NheI | GCTAGC | 3 cut(s) | 5, 266, 296 |
| NlaIII | CATG | 4 cut(s) | 175, 470, 770, 974 |
| NlaIV | GGNNCC | 8 cut(s) | 112, 126, 523, 636, 887, 1153, 1246, 1369 |
| NmeAIII | GCCGAG | 1 cut(s) | 716 |
| NmuCI | GTSAC | 2 cut(s) | 332, 565 |
| NspI | RCATGY | 1 cut(s) | 470 |
| PaeR7I | CTCGAG | 1 cut(s) | 22 |
| PasI | CCCWGGG | 1 cut(s) | 159 |
| PciI | ACATGT | 1 cut(s) | 466 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 92 |
| PfeI | GAWTC | 5 cut(s) | 35, 83, 602, 696, 1055 |
| Pfl23II | CGTACG | 1 cut(s) | 700 |
| PflFI | GACNNNGTC | 1 cut(s) | 971 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 673, 1161 |
| PleI | GAGTC | 3 cut(s) | 322, 850, 1283 |
| PluTI | GGCGCC | 2 cut(s) | 889, 1155 |
| PpsI | GAGTC | 3 cut(s) | 322, 850, 1283 |
| PscI | ACATGT | 1 cut(s) | 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 663 |
| Psp6I | CCWGG | 4 cut(s) | 116, 158, 320, 412 |
| PspFI | CCCAGC | 3 cut(s) | 572, 673, 1176 |
| PspGI | CCWGG | 4 cut(s) | 116, 158, 320, 412 |
| PspLI | CGTACG | 1 cut(s) | 700 |
| PspN4I | GGNNCC | 8 cut(s) | 112, 126, 523, 636, 887, 1153, 1246, 1369 |
| PspPI | GGNCC | 3 cut(s) | 362, 522, 575 |
| PstI | CTGCAG | 2 cut(s) | 109, 686 |
| PstNI | CAGNNNCTG | 1 cut(s) | 673 |
| PsuI | RGATCY | 1 cut(s) | 1041 |
| PsyI | GACNNNGTC | 1 cut(s) | 971 |
| PvuII | CAGCTG | 1 cut(s) | 572 |
| RsaI | GTAC | 4 cut(s) | 340, 702, 1246, 1369 |
| RsaNI | GTAC | 4 cut(s) | 339, 701, 1245, 1368 |
| SacI | GAGCTC | 1 cut(s) | 663 |
| SaqAI | TTAA | 2 cut(s) | 542, 1158 |
| Sau3AI | GATC | 5 cut(s) | 718, 825, 1009, 1041, 1405 |
| Sau96I | GGNCC | 3 cut(s) | 362, 522, 575 |
| SbfI | CCTGCAGG | 1 cut(s) | 109 |
| SchI | GAGTC | 3 cut(s) | 323, 850, 1283 |
| ScrFI | CCNGG | 7 cut(s) | 40, 118, 160, 322, 414, 799, 800 |
| SdaI | CCTGCAGG | 1 cut(s) | 109 |
| SduI | GDGCHC | 2 cut(s) | 663, 750 |
| SfaNI | GCATC | 7 cut(s) | 18, 205, 802, 865, 898, 907, 1453 |
| SfcI | CTRYAG | 3 cut(s) | 105, 682, 1389 |
| SfoI | GGCGCC | 2 cut(s) | 887, 1153 |
| Sfr274I | CTCGAG | 1 cut(s) | 22 |
| SinI | GGWCC | 1 cut(s) | 522 |
| SlaI | CTCGAG | 1 cut(s) | 22 |
| SmaI | CCCGGG | 1 cut(s) | 800 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 109 |
| Sse9I | AATT | 3 cut(s) | 256, 550, 623 |
| SspDI | GGCGCC | 2 cut(s) | 885, 1151 |
| SspMI | CTAG | 5 cut(s) | 6, 131, 267, 297, 983 |
| SstI | GAGCTC | 1 cut(s) | 663 |
| StyD4I | CCNGG | 7 cut(s) | 38, 116, 158, 320, 412, 797, 798 |
| StyI | CCWWGG | 2 cut(s) | 171, 894 |
| TaaI | ACNGT | 7 cut(s) | 338, 373, 389, 435, 530, 565, 866 |
| TaiI | ACGT | 3 cut(s) | 63, 957, 1210 |
| TaqI | TCGA | 5 cut(s) | 23, 600, 657, 788, 828 |
| TasI | AATT | 3 cut(s) | 256, 550, 623 |
| TfiI | GAWTC | 5 cut(s) | 35, 83, 602, 696, 1055 |
| Tru1I | TTAA | 2 cut(s) | 542, 1158 |
| Tru9I | TTAA | 2 cut(s) | 542, 1158 |
| TscAI | CASTG | 1 cut(s) | 1336 |
| TseFI | GTSAC | 2 cut(s) | 332, 565 |
| TseI | GCWGC | 4 cut(s) | 427, 782, 811, 1061 |
| Tsp45I | GTSAC | 2 cut(s) | 332, 565 |
| TspDTI | ATGAA | 1 cut(s) | 461 |
| TspGWI | ACGGA | 2 cut(s) | 320, 745 |
| TspMI | CCCGGG | 1 cut(s) | 798 |
| TspRI | CASTG | 1 cut(s) | 1336 |
| Tth111I | GACNNNGTC | 1 cut(s) | 971 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 673, 1161 |
| VpaK11BI | GGWCC | 1 cut(s) | 522 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 893, 1004 |
| XapI | RAATTY | 1 cut(s) | 623 |
| XceI | RCATGY | 1 cut(s) | 470 |
| XhoI | CTCGAG | 1 cut(s) | 22 |
| XmaI | CCCGGG | 1 cut(s) | 798 |
| XspI | CTAG | 5 cut(s) | 6, 131, 267, 297, 983 |