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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 441 |
| AcoI | YGGCCR | 1 cut(s) | 463 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 41, 101, 221, 441 |
| AflIII | ACRYGT | 1 cut(s) | 324 |
| AjiI | CACGTC | 1 cut(s) | 325 |
| Alw26I | GTCTC | 5 cut(s) | 54, 114, 131, 174, 191 |
| Ama87I | CYCGRG | 1 cut(s) | 298 |
| AoxI | GGCC | 1 cut(s) | 463 |
| AspLEI | GCGC | 3 cut(s) | 52, 112, 172 |
| AspS9I | GGNCC | 1 cut(s) | 318 |
| AsuC2I | CCSGG | 2 cut(s) | 316, 467 |
| AsuNHI | GCTAGC | 1 cut(s) | 218 |
| AvaI | CYCGRG | 1 cut(s) | 298 |
| AvaII | GGWCC | 1 cut(s) | 318 |
| BanII | GRGCYC | 1 cut(s) | 474 |
| BauI | CACGAG | 1 cut(s) | 459 |
| BccI | CCATC | 4 cut(s) | 73, 193, 271, 398 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 373, 407 |
| BcnI | CCSGG | 2 cut(s) | 316, 467 |
| BcoDI | GTCTC | 5 cut(s) | 54, 114, 131, 174, 191 |
| BfaI | CTAG | 5 cut(s) | 159, 219, 282, 404, 490 |
| BfmI | CTRYAG | 1 cut(s) | 382 |
| BglII | AGATCT | 1 cut(s) | 294 |
| BlpI | GCTNAGC | 3 cut(s) | 53, 113, 173 |
| Bme1390I | CCNGG | 2 cut(s) | 316, 467 |
| Bme18I | GGWCC | 1 cut(s) | 318 |
| BmeT110I | CYCGRG | 1 cut(s) | 298 |
| BmgBI | CACGTC | 1 cut(s) | 325 |
| BmgT120I | GGNCC | 1 cut(s) | 318 |
| BmiI | GGNNCC | 3 cut(s) | 319, 340, 471 |
| BmrFI | CCNGG | 2 cut(s) | 316, 467 |
| BmtI | GCTAGC | 1 cut(s) | 222 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 51, 83, 111, 143, 171, 203 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 53, 113, 173 |
| BpuMI | CCSGG | 2 cut(s) | 316, 467 |
| BsaI | GGTCTC | 1 cut(s) | 131 |
| BsaJI | CCNNGG | 1 cut(s) | 440 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 41, 101, 221, 441 |
| Bse118I | RCCGGY | 1 cut(s) | 98 |
| BseDI | CCNNGG | 1 cut(s) | 440 |
| BseGI | GGATG | 1 cut(s) | 24 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 41, 101, 221, 441 |
| BshFI | GGCC | 1 cut(s) | 465 |
| BsiHKCI | CYCGRG | 1 cut(s) | 298 |
| BsiSI | CCGG | 3 cut(s) | 99, 315, 466 |
| BslFI | GGGAC | 3 cut(s) | 18, 78, 198 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 41, 101, 221, 441 |
| BsmAI | GTCTC | 5 cut(s) | 54, 114, 131, 174, 191 |
| BsmBI | CGTCTC | 1 cut(s) | 114 |
| BsmFI | GGGAC | 3 cut(s) | 18, 78, 198 |
| BsnI | GGCC | 1 cut(s) | 465 |
| Bso31I | GGTCTC | 1 cut(s) | 131 |
| BsoBI | CYCGRG | 1 cut(s) | 298 |
| Bsp1286I | GDGCHC | 1 cut(s) | 474 |
| Bsp143I | GATC | 1 cut(s) | 294 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 53, 113, 173 |
| BspANI | GGCC | 1 cut(s) | 465 |
| BspLI | GGNNCC | 3 cut(s) | 319, 340, 471 |
| BspMAI | CTGCAG | 1 cut(s) | 386 |
| BspOI | GCTAGC | 1 cut(s) | 222 |
| BspTNI | GGTCTC | 1 cut(s) | 131 |
| BsrFI | RCCGGY | 1 cut(s) | 98 |
| BssAI | RCCGGY | 1 cut(s) | 98 |
| BssECI | CCNNGG | 1 cut(s) | 440 |
| BssMI | GATC | 1 cut(s) | 294 |
| BssSI | CACGAG | 1 cut(s) | 459 |
| Bst2BI | CACGAG | 1 cut(s) | 459 |
| Bst4CI | ACNGT | 3 cut(s) | 125, 185, 441 |
| BstC8I | GCNNGC | 7 cut(s) | 40, 73, 100, 133, 220, 250, 366 |
| BstDEI | CTNAG | 4 cut(s) | 53, 113, 173, 233 |
| BstDSI | CCRYGG | 1 cut(s) | 440 |
| BstF5I | GGATG | 1 cut(s) | 24 |
| BstHHI | GCGC | 3 cut(s) | 52, 112, 172 |
| BstKTI | GATC | 1 cut(s) | 297 |
| BstMAI | GTCTC | 5 cut(s) | 54, 114, 131, 174, 191 |
| BstMBI | GATC | 1 cut(s) | 294 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 169 |
| BstSCI | CCNGG | 2 cut(s) | 314, 465 |
| BstSFI | CTRYAG | 1 cut(s) | 382 |
| BstX2I | RGATCY | 1 cut(s) | 294 |
| BstYI | RGATCY | 1 cut(s) | 294 |
| BsuRI | GGCC | 1 cut(s) | 465 |
| BtgI | CCRYGG | 1 cut(s) | 440 |
| BtgZI | GCGATG | 3 cut(s) | 290, 376, 467 |
| BtrI | CACGTC | 1 cut(s) | 325 |
| BtsCI | GGATG | 1 cut(s) | 24 |
| BtsI | GCAGTG | 1 cut(s) | 310 |
| BtsIMutI | CAGTG | 1 cut(s) | 310 |
| Cac8I | GCNNGC | 7 cut(s) | 40, 73, 100, 133, 220, 250, 366 |
| CfoI | GCGC | 3 cut(s) | 52, 112, 172 |
| Cfr10I | RCCGGY | 1 cut(s) | 98 |
| Cfr13I | GGNCC | 1 cut(s) | 318 |
| CseI | GACGC | 1 cut(s) | 357 |
| CviAII | CATG | 1 cut(s) | 24 |
| CviJI | RGCY | 5 cut(s) | 7, 281, 465, 472, 489 |
| CviKI_1 | RGCY | 5 cut(s) | 7, 281, 465, 472, 489 |
| DdeI | CTNAG | 4 cut(s) | 53, 113, 173, 233 |
| DpnI | GATC | 1 cut(s) | 296 |
| DpnII | GATC | 1 cut(s) | 294 |
| EaeI | YGGCCR | 1 cut(s) | 463 |
| EciI | GGCGGA | 1 cut(s) | 365 |
| Eco24I | GRGCYC | 1 cut(s) | 474 |
| Eco31I | GGTCTC | 1 cut(s) | 131 |
| Eco32I | GATATC | 1 cut(s) | 409 |
| Eco47I | GGWCC | 1 cut(s) | 318 |
| Eco88I | CYCGRG | 1 cut(s) | 298 |
| EcoRV | GATATC | 1 cut(s) | 409 |
| EcoT38I | GRGCYC | 1 cut(s) | 474 |
| Esp3I | CGTCTC | 1 cut(s) | 114 |
| FaeI | CATG | 1 cut(s) | 27 |
| FaiI | YATR | 3 cut(s) | 25, 290, 437 |
| FaqI | GGGAC | 3 cut(s) | 18, 78, 198 |
| FatI | CATG | 1 cut(s) | 23 |
| FauI | CCCGC | 4 cut(s) | 43, 103, 163, 223 |
| FokI | GGATG | 1 cut(s) | 31 |
| FriOI | GRGCYC | 1 cut(s) | 474 |
| FspBI | CTAG | 5 cut(s) | 159, 219, 282, 404, 490 |
| GlaI | GCGC | 3 cut(s) | 51, 111, 171 |
| HaeIII | GGCC | 1 cut(s) | 465 |
| HapII | CCGG | 3 cut(s) | 99, 315, 466 |
| HgaI | GACGC | 1 cut(s) | 357 |
| HhaI | GCGC | 3 cut(s) | 52, 112, 172 |
| Hin1II | CATG | 1 cut(s) | 27 |
| Hin6I | GCGC | 3 cut(s) | 50, 110, 170 |
| HinP1I | GCGC | 3 cut(s) | 50, 110, 170 |
| HinfI | GANTC | 4 cut(s) | 311, 359, 417, 457 |
| HpaII | CCGG | 3 cut(s) | 99, 315, 466 |
| Hpy166II | GTNNAC | 1 cut(s) | 478 |
| Hpy188I | TCNGA | 3 cut(s) | 18, 322, 343 |
| Hpy188III | TCNNGA | 1 cut(s) | 298 |
| Hpy8I | GTNNAC | 1 cut(s) | 478 |
| Hpy99I | CGWCG | 1 cut(s) | 326 |
| HpyAV | CCTTC | 1 cut(s) | 259 |
| HpyCH4III | ACNGT | 3 cut(s) | 125, 185, 441 |
| HpyCH4IV | ACGT | 1 cut(s) | 324 |
| HpyCH4V | TGCA | 5 cut(s) | 75, 135, 195, 252, 384 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 169 |
| HpyF3I | CTNAG | 4 cut(s) | 53, 113, 173, 233 |
| HpySE526I | ACGT | 1 cut(s) | 324 |
| Hsp92II | CATG | 1 cut(s) | 27 |
| HspAI | GCGC | 3 cut(s) | 50, 110, 170 |
| KroI | GCCGGC | 1 cut(s) | 98 |
| KroNI | GCCGGC | 1 cut(s) | 100 |
| Kzo9I | GATC | 1 cut(s) | 294 |
| LmnI | GCTCC | 1 cut(s) | 469 |
| LpnPI | CCDG | 5 cut(s) | 112, 328, 378, 394, 479 |
| MaeI | CTAG | 5 cut(s) | 159, 219, 282, 404, 490 |
| MaeII | ACGT | 1 cut(s) | 324 |
| MalI | GATC | 1 cut(s) | 296 |
| MboI | GATC | 1 cut(s) | 294 |
| MflI | RGATCY | 1 cut(s) | 294 |
| MhlI | GDGCHC | 1 cut(s) | 474 |
| MlyI | GAGTC | 1 cut(s) | 451 |
| MmeI | TCCRAC | 3 cut(s) | 345, 436, 445 |
| MnlI | CCTC | 4 cut(s) | 77, 135, 197, 301 |
| MreI | CGCCGGCG | 1 cut(s) | 98 |
| MroNI | GCCGGC | 1 cut(s) | 98 |
| MspI | CCGG | 3 cut(s) | 99, 315, 466 |
| MspR9I | CCNGG | 2 cut(s) | 316, 467 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 169 |
| NaeI | GCCGGC | 1 cut(s) | 100 |
| NciI | CCSGG | 2 cut(s) | 316, 467 |
| NdeII | GATC | 1 cut(s) | 294 |
| NgoMIV | GCCGGC | 1 cut(s) | 98 |
| NheI | GCTAGC | 1 cut(s) | 218 |
| NlaIII | CATG | 1 cut(s) | 27 |
| NlaIV | GGNNCC | 3 cut(s) | 319, 340, 471 |
| PaeR7I | CTCGAG | 1 cut(s) | 298 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 339 |
| PdiI | GCCGGC | 1 cut(s) | 100 |
| PfeI | GAWTC | 3 cut(s) | 311, 359, 417 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 441 |
| PleI | GAGTC | 1 cut(s) | 451 |
| PpsI | GAGTC | 1 cut(s) | 451 |
| PspN4I | GGNNCC | 3 cut(s) | 319, 340, 471 |
| PspPI | GGNCC | 1 cut(s) | 318 |
| PstI | CTGCAG | 1 cut(s) | 386 |
| PsuI | RGATCY | 1 cut(s) | 294 |
| Sau3AI | GATC | 1 cut(s) | 294 |
| Sau96I | GGNCC | 1 cut(s) | 318 |
| SchI | GAGTC | 1 cut(s) | 451 |
| ScrFI | CCNGG | 2 cut(s) | 316, 467 |
| SduI | GDGCHC | 1 cut(s) | 474 |
| SetI | ASST | 2 cut(s) | 270, 327 |
| SfcI | CTRYAG | 1 cut(s) | 382 |
| Sfr274I | CTCGAG | 1 cut(s) | 298 |
| SgrAI | CRCCGGYG | 1 cut(s) | 98 |
| SinI | GGWCC | 1 cut(s) | 318 |
| SlaI | CTCGAG | 1 cut(s) | 298 |
| SmlI | CTYRAG | 1 cut(s) | 298 |
| SmoI | CTYRAG | 1 cut(s) | 298 |
| SspMI | CTAG | 5 cut(s) | 159, 219, 282, 404, 490 |
| StyD4I | CCNGG | 2 cut(s) | 314, 465 |
| TaaI | ACNGT | 3 cut(s) | 125, 185, 441 |
| TaiI | ACGT | 1 cut(s) | 327 |
| TaqI | TCGA | 1 cut(s) | 299 |
| TfiI | GAWTC | 3 cut(s) | 311, 359, 417 |
| TscAI | CASTG | 1 cut(s) | 310 |
| TspGWI | ACGGA | 1 cut(s) | 361 |
| TspRI | CASTG | 1 cut(s) | 310 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 441 |
| VpaK11BI | GGWCC | 1 cut(s) | 318 |
| XhoI | CTCGAG | 1 cut(s) | 298 |
| XspI | CTAG | 5 cut(s) | 159, 219, 282, 404, 490 |