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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1133 |
| AccB1I | GGYRCC | 5 cut(s) | 487, 881, 917, 1010, 1133 |
| AccBSI | CCGCTC | 3 cut(s) | 577, 790, 1017 |
| AccII | CGCG | 7 cut(s) | 258, 527, 610, 953, 1096, 1162, 1164 |
| AclWI | GGATC | 2 cut(s) | 171, 1183 |
| AcoI | YGGCCR | 2 cut(s) | 153, 183 |
| AcuI | CTGAAG | 1 cut(s) | 622 |
| AcyI | GRCGYC | 3 cut(s) | 488, 882, 918 |
| AfaI | GTAC | 4 cut(s) | 5, 524, 802, 1135 |
| AfeI | AGCGCT | 1 cut(s) | 178 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 70, 231, 306, 397, 712 |
| AflIII | ACRYGT | 1 cut(s) | 1089 |
| AgsI | TTSAA | 2 cut(s) | 824, 832 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1149 |
| AjiI | CACGTC | 1 cut(s) | 1090 |
| AjnI | CCWGG | 2 cut(s) | 251, 305 |
| AleI | CACNNNNGTG | 1 cut(s) | 111 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 539, 571 |
| AluBI | AGCT | 5 cut(s) | 455, 642, 721, 835, 938 |
| AluI | AGCT | 5 cut(s) | 455, 642, 721, 835, 938 |
| Alw26I | GTCTC | 5 cut(s) | 41, 108, 284, 746, 1136 |
| AlwI | GGATC | 2 cut(s) | 171, 1183 |
| Ama87I | CYCGRG | 2 cut(s) | 1001, 1122 |
| Aor51HI | AGCGCT | 1 cut(s) | 178 |
| AoxI | GGCC | 6 cut(s) | 21, 153, 183, 188, 444, 762 |
| Asp718I | GGTACC | 1 cut(s) | 1133 |
| AsuC2I | CCSGG | 6 cut(s) | 44, 187, 226, 706, 1123, 1124 |
| AsuHPI | GGTGA | 7 cut(s) | 49, 94, 98, 125, 323, 340, 1061 |
| AvaI | CYCGRG | 2 cut(s) | 1001, 1122 |
| AvaII | GGWCC | 7 cut(s) | 144, 260, 336, 427, 1040, 1056, 1167 |
| BaeGI | GKGCMC | 1 cut(s) | 1015 |
| BanI | GGYRCC | 5 cut(s) | 487, 881, 917, 1010, 1133 |
| BbsI | GAAGAC | 1 cut(s) | 278 |
| BccI | CCATC | 5 cut(s) | 79, 113, 573, 929, 1124 |
| BceAI | ACGGC | 5 cut(s) | 168, 479, 633, 974, 1173 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 992, 1026 |
| BciT130I | CCWGG | 2 cut(s) | 253, 307 |
| BcnI | CCSGG | 6 cut(s) | 44, 187, 226, 706, 1123, 1124 |
| BcoDI | GTCTC | 5 cut(s) | 41, 108, 284, 746, 1136 |
| BfaI | CTAG | 1 cut(s) | 1149 |
| BfmI | CTRYAG | 1 cut(s) | 129 |
| BfoI | RGCGCY | 4 cut(s) | 180, 491, 885, 921 |
| Bme1390I | CCNGG | 8 cut(s) | 44, 187, 226, 253, 307, 706, 1123, 1124 |
| Bme18I | GGWCC | 7 cut(s) | 144, 260, 336, 427, 1040, 1056, 1167 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1149 |
| BmeT110I | CYCGRG | 2 cut(s) | 1001, 1122 |
| BmgBI | CACGTC | 1 cut(s) | 1090 |
| BmrFI | CCNGG | 8 cut(s) | 44, 187, 226, 253, 307, 706, 1123, 1124 |
| BmsI | GCATC | 4 cut(s) | 81, 231, 978, 1207 |
| BpiI | GAAGAC | 1 cut(s) | 278 |
| BpmI | CTGGAG | 2 cut(s) | 383, 728 |
| Bpu10I | CCTNAGC | 2 cut(s) | 722, 1018 |
| BpuMI | CCSGG | 6 cut(s) | 44, 187, 226, 706, 1123, 1124 |
| BsaHI | GRCGYC | 3 cut(s) | 488, 882, 918 |
| BsaI | GGTCTC | 2 cut(s) | 746, 1136 |
| BsaJI | CCNNGG | 8 cut(s) | 9, 69, 109, 306, 396, 704, 765, 1122 |
| BsaWI | WCCGGW | 1 cut(s) | 76 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 539, 569 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 70, 231, 306, 397, 712 |
| Bse118I | RCCGGY | 2 cut(s) | 155, 375 |
| Bse1I | ACTGG | 4 cut(s) | 64, 100, 320, 780 |
| BseBI | CCWGG | 2 cut(s) | 253, 307 |
| BseDI | CCNNGG | 8 cut(s) | 9, 69, 109, 306, 396, 704, 765, 1122 |
| BseGI | GGATG | 4 cut(s) | 246, 969, 1072, 1135 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 70, 231, 306, 397, 712 |
| BseMII | CTCAG | 3 cut(s) | 788, 855, 1032 |
| BseNI | ACTGG | 4 cut(s) | 64, 100, 320, 780 |
| BsePI | GCGCGC | 1 cut(s) | 1160 |
| BseSI | GKGCMC | 1 cut(s) | 1015 |
| BseX3I | CGGCCG | 2 cut(s) | 153, 183 |
| BseYI | CCCAGC | 2 cut(s) | 24, 580 |
| BsgI | GTGCAG | 2 cut(s) | 155, 299 |
| Bsh1236I | CGCG | 7 cut(s) | 258, 527, 610, 953, 1096, 1162, 1164 |
| Bsh1285I | CGRYCG | 3 cut(s) | 156, 186, 813 |
| BshFI | GGCC | 6 cut(s) | 23, 155, 185, 190, 446, 764 |
| BshNI | GGYRCC | 5 cut(s) | 487, 881, 917, 1010, 1133 |
| BsiEI | CGRYCG | 3 cut(s) | 156, 186, 813 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1001, 1122 |
| BsiSI | CCGG | 8 cut(s) | 44, 77, 156, 186, 225, 376, 706, 1123 |
| BslFI | GGGAC | 3 cut(s) | 157, 807, 1042 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 70, 231, 306, 397, 712 |
| BsmAI | GTCTC | 5 cut(s) | 41, 108, 284, 746, 1136 |
| BsmBI | CGTCTC | 1 cut(s) | 41 |
| BsmFI | GGGAC | 3 cut(s) | 157, 807, 1042 |
| BsnI | GGCC | 6 cut(s) | 23, 155, 185, 190, 446, 764 |
| Bso31I | GGTCTC | 2 cut(s) | 746, 1136 |
| BsoBI | CYCGRG | 2 cut(s) | 1001, 1122 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1015 |
| Bsp143I | GATC | 4 cut(s) | 163, 502, 1171, 1188 |
| BspANI | GGCC | 6 cut(s) | 23, 155, 185, 190, 446, 764 |
| BspCNI | CTCAG | 3 cut(s) | 789, 856, 1031 |
| BspFNI | CGCG | 7 cut(s) | 258, 527, 610, 953, 1096, 1162, 1164 |
| BspHI | TCATGA | 1 cut(s) | 534 |
| BspPI | GGATC | 2 cut(s) | 171, 1183 |
| BspQI | GCTCTTC | 1 cut(s) | 711 |
| BspT107I | GGYRCC | 5 cut(s) | 487, 881, 917, 1010, 1133 |
| BspTNI | GGTCTC | 2 cut(s) | 746, 1136 |
| BsrBI | CCGCTC | 3 cut(s) | 577, 790, 1017 |
| BsrFI | RCCGGY | 2 cut(s) | 155, 375 |
| BsrI | ACTGG | 4 cut(s) | 64, 100, 320, 780 |
| BssAI | RCCGGY | 2 cut(s) | 155, 375 |
| BssECI | CCNNGG | 8 cut(s) | 9, 69, 109, 306, 396, 704, 765, 1122 |
| BssHII | GCGCGC | 1 cut(s) | 1160 |
| BssMI | GATC | 4 cut(s) | 163, 502, 1171, 1188 |
| BssNI | GRCGYC | 3 cut(s) | 488, 882, 918 |
| BssT1I | CCWWGG | 2 cut(s) | 109, 765 |
| Bst2UI | CCWGG | 2 cut(s) | 253, 307 |
| Bst4CI | ACNGT | 4 cut(s) | 34, 133, 217, 277 |
| Bst6I | CTCTTC | 3 cut(s) | 396, 405, 711 |
| BstACI | GRCGYC | 3 cut(s) | 488, 882, 918 |
| BstDEI | CTNAG | 5 cut(s) | 696, 722, 797, 864, 1018 |
| BstF5I | GGATG | 4 cut(s) | 246, 969, 1072, 1135 |
| BstFNI | CGCG | 7 cut(s) | 258, 527, 610, 953, 1096, 1162, 1164 |
| BstH2I | RGCGCY | 4 cut(s) | 180, 491, 885, 921 |
| BstKTI | GATC | 4 cut(s) | 166, 505, 1174, 1191 |
| BstMAI | GTCTC | 5 cut(s) | 41, 108, 284, 746, 1136 |
| BstMBI | GATC | 4 cut(s) | 163, 502, 1171, 1188 |
| BstMCI | CGRYCG | 3 cut(s) | 156, 186, 813 |
| BstNI | CCWGG | 2 cut(s) | 253, 307 |
| BstSCI | CCNGG | 8 cut(s) | 42, 185, 224, 251, 305, 704, 1121, 1122 |
| BstSFI | CTRYAG | 1 cut(s) | 129 |
| BstSLI | GKGCMC | 1 cut(s) | 1015 |
| BstUI | CGCG | 7 cut(s) | 258, 527, 610, 953, 1096, 1162, 1164 |
| BstV2I | GAAGAC | 1 cut(s) | 278 |
| BstZI | CGGCCG | 2 cut(s) | 153, 183 |
| BsuRI | GGCC | 6 cut(s) | 23, 155, 185, 190, 446, 764 |
| BtgZI | GCGATG | 2 cut(s) | 104, 872 |
| BtrI | CACGTC | 1 cut(s) | 1090 |
| BtsCI | GGATG | 4 cut(s) | 246, 969, 1072, 1135 |
| BtsI | GCAGTG | 1 cut(s) | 477 |
| BtsIMutI | CAGTG | 4 cut(s) | 138, 477, 505, 1203 |
| CciI | TCATGA | 1 cut(s) | 534 |
| Cfr10I | RCCGGY | 2 cut(s) | 155, 375 |
| Cfr9I | CCCGGG | 1 cut(s) | 1122 |
| CseI | GACGC | 3 cut(s) | 367, 447, 959 |
| Csp6I | GTAC | 4 cut(s) | 4, 523, 801, 1134 |
| CviAII | CATG | 1 cut(s) | 535 |
| CviQI | GTAC | 4 cut(s) | 4, 523, 801, 1134 |
| DdeI | CTNAG | 5 cut(s) | 696, 722, 797, 864, 1018 |
| DinI | GGCGCC | 3 cut(s) | 489, 883, 919 |
| DpnI | GATC | 4 cut(s) | 165, 504, 1173, 1190 |
| DpnII | GATC | 4 cut(s) | 163, 502, 1171, 1188 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1149 |
| EaeI | YGGCCR | 2 cut(s) | 153, 183 |
| EagI | CGGCCG | 2 cut(s) | 153, 183 |
| Eam1104I | CTCTTC | 3 cut(s) | 396, 405, 711 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1149 |
| EarI | CTCTTC | 3 cut(s) | 396, 405, 711 |
| EciI | GGCGGA | 8 cut(s) | 419, 491, 773, 794, 857, 925, 1053, 1142 |
| EclXI | CGGCCG | 2 cut(s) | 153, 183 |
| Eco130I | CCWWGG | 2 cut(s) | 109, 765 |
| Eco31I | GGTCTC | 2 cut(s) | 746, 1136 |
| Eco47I | GGWCC | 7 cut(s) | 144, 260, 336, 427, 1040, 1056, 1167 |
| Eco47III | AGCGCT | 1 cut(s) | 178 |
| Eco52I | CGGCCG | 2 cut(s) | 153, 183 |
| Eco57I | CTGAAG | 1 cut(s) | 622 |
| Eco88I | CYCGRG | 2 cut(s) | 1001, 1122 |
| EcoO109I | RGGNCCY | 2 cut(s) | 144, 1056 |
| EcoRII | CCWGG | 2 cut(s) | 251, 305 |
| EcoT14I | CCWWGG | 2 cut(s) | 109, 765 |
| EgeI | GGCGCC | 3 cut(s) | 489, 883, 919 |
| EheI | GGCGCC | 3 cut(s) | 489, 883, 919 |
| ErhI | CCWWGG | 2 cut(s) | 109, 765 |
| Esp3I | CGTCTC | 1 cut(s) | 41 |
| FaeI | CATG | 1 cut(s) | 538 |
| FaiI | YATR | 8 cut(s) | 325, 536, 605, 680, 849, 902, 1046, 1139 |
| FaqI | GGGAC | 3 cut(s) | 157, 807, 1042 |
| FatI | CATG | 1 cut(s) | 534 |
| FauI | CCCGC | 9 cut(s) | 133, 152, 400, 499, 592, 658, 783, 1022, 1157 |
| FokI | GGATG | 4 cut(s) | 253, 956, 1059, 1142 |
| FspBI | CTAG | 1 cut(s) | 1149 |
| GsaI | CCCAGC | 2 cut(s) | 28, 584 |
| GsuI | CTGGAG | 2 cut(s) | 383, 728 |
| HaeII | RGCGCY | 4 cut(s) | 180, 491, 885, 921 |
| HaeIII | GGCC | 6 cut(s) | 23, 155, 185, 190, 446, 764 |
| HapII | CCGG | 8 cut(s) | 44, 77, 156, 186, 225, 376, 706, 1123 |
| HgaI | GACGC | 3 cut(s) | 367, 447, 959 |
| Hin1I | GRCGYC | 3 cut(s) | 488, 882, 918 |
| Hin1II | CATG | 1 cut(s) | 538 |
| HindIII | AAGCTT | 1 cut(s) | 936 |
| HinfI | GANTC | 4 cut(s) | 302, 386, 509, 1180 |
| HpaII | CCGG | 8 cut(s) | 44, 77, 156, 186, 225, 376, 706, 1123 |
| HphI | GGTGA | 7 cut(s) | 49, 94, 98, 125, 323, 340, 1061 |
| Hpy166II | GTNNAC | 1 cut(s) | 40 |
| Hpy188I | TCNGA | 6 cut(s) | 70, 168, 737, 1087, 1155, 1171 |
| Hpy188III | TCNNGA | 4 cut(s) | 506, 535, 745, 1001 |
| Hpy8I | GTNNAC | 1 cut(s) | 40 |
| Hpy99I | CGWCG | 4 cut(s) | 463, 619, 1087, 1159 |
| HpyCH4III | ACNGT | 4 cut(s) | 34, 133, 217, 277 |
| HpyCH4IV | ACGT | 3 cut(s) | 50, 894, 1089 |
| HpyCH4V | TGCA | 3 cut(s) | 136, 280, 470 |
| HpyF3I | CTNAG | 5 cut(s) | 696, 722, 797, 864, 1018 |
| HpySE526I | ACGT | 3 cut(s) | 50, 894, 1089 |
| Hsp92I | GRCGYC | 3 cut(s) | 488, 882, 918 |
| Hsp92II | CATG | 1 cut(s) | 538 |
| KasI | GGCGCC | 3 cut(s) | 487, 881, 917 |
| KflI | GGGWCCC | 2 cut(s) | 144, 1056 |
| KpnI | GGTACC | 1 cut(s) | 1137 |
| KroI | GCCGGC | 2 cut(s) | 155, 375 |
| KroNI | GCCGGC | 2 cut(s) | 157, 377 |
| Kzo9I | GATC | 4 cut(s) | 163, 502, 1171, 1188 |
| LguI | GCTCTTC | 1 cut(s) | 711 |
| LmnI | GCTCC | 2 cut(s) | 199, 547 |
| LweI | GCATC | 4 cut(s) | 81, 231, 978, 1207 |
| MaeI | CTAG | 1 cut(s) | 1149 |
| MaeII | ACGT | 3 cut(s) | 50, 894, 1089 |
| MaeIII | GTNAC | 3 cut(s) | 328, 669, 1181 |
| MalI | GATC | 4 cut(s) | 165, 504, 1173, 1190 |
| MbiI | CCGCTC | 3 cut(s) | 577, 790, 1017 |
| MboI | GATC | 4 cut(s) | 163, 502, 1171, 1188 |
| MboII | GAAGA | 7 cut(s) | 128, 283, 413, 419, 422, 728, 1226 |
| MfeI | CAATTG | 1 cut(s) | 621 |
| MhlI | GDGCHC | 1 cut(s) | 1015 |
| MluCI | AATT | 1 cut(s) | 621 |
| Mly113I | GGCGCC | 3 cut(s) | 488, 882, 918 |
| MlyI | GAGTC | 4 cut(s) | 311, 380, 503, 1189 |
| MmeI | TCCRAC | 2 cut(s) | 1065, 1178 |
| MroNI | GCCGGC | 2 cut(s) | 155, 375 |
| MslI | CAYNNNNRTG | 2 cut(s) | 111, 570 |
| MspA1I | CMGCKG | 3 cut(s) | 232, 341, 1026 |
| MspI | CCGG | 8 cut(s) | 44, 77, 156, 186, 225, 376, 706, 1123 |
| MspR9I | CCNGG | 8 cut(s) | 44, 187, 226, 253, 307, 706, 1123, 1124 |
| MteI | GCGCNGCGC | 1 cut(s) | 1115 |
| MunI | CAATTG | 1 cut(s) | 621 |
| MvaI | CCWGG | 2 cut(s) | 253, 307 |
| MvnI | CGCG | 7 cut(s) | 258, 527, 610, 953, 1096, 1162, 1164 |
| NaeI | GCCGGC | 2 cut(s) | 157, 377 |
| NarI | GGCGCC | 3 cut(s) | 488, 882, 918 |
| NciI | CCSGG | 6 cut(s) | 44, 187, 226, 706, 1123, 1124 |
| NdeII | GATC | 4 cut(s) | 163, 502, 1171, 1188 |
| NgoMIV | GCCGGC | 2 cut(s) | 155, 375 |
| NlaIII | CATG | 1 cut(s) | 538 |
| NmeAIII | GCCGAG | 4 cut(s) | 34, 421, 544, 623 |
| NmuCI | GTSAC | 2 cut(s) | 328, 1181 |
| OliI | CACNNNNGTG | 1 cut(s) | 111 |
| PaeR7I | CTCGAG | 1 cut(s) | 1001 |
| PagI | TCATGA | 1 cut(s) | 534 |
| PauI | GCGCGC | 1 cut(s) | 1160 |
| PciSI | GCTCTTC | 1 cut(s) | 711 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 681 |
| PdiI | GCCGGC | 2 cut(s) | 157, 377 |
| PleI | GAGTC | 4 cut(s) | 310, 380, 503, 1188 |
| PluTI | GGCGCC | 3 cut(s) | 491, 885, 921 |
| PpsI | GAGTC | 4 cut(s) | 310, 380, 503, 1188 |
| PpuMI | RGGWCCY | 2 cut(s) | 144, 1056 |
| Psp5II | RGGWCCY | 2 cut(s) | 144, 1056 |
| Psp6I | CCWGG | 2 cut(s) | 251, 305 |
| PspFI | CCCAGC | 2 cut(s) | 24, 580 |
| PspGI | CCWGG | 2 cut(s) | 251, 305 |
| PspPPI | RGGWCCY | 2 cut(s) | 144, 1056 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 205, 237 |
| PteI | GCGCGC | 1 cut(s) | 1160 |
| RsaI | GTAC | 4 cut(s) | 5, 524, 802, 1135 |
| RsaNI | GTAC | 4 cut(s) | 4, 523, 801, 1134 |
| RseI | CAYNNNNRTG | 2 cut(s) | 111, 570 |
| SapI | GCTCTTC | 1 cut(s) | 711 |
| Sau3AI | GATC | 4 cut(s) | 163, 502, 1171, 1188 |
| SchI | GAGTC | 4 cut(s) | 311, 380, 503, 1189 |
| ScrFI | CCNGG | 8 cut(s) | 44, 187, 226, 253, 307, 706, 1123, 1124 |
| SduI | GDGCHC | 1 cut(s) | 1015 |
| SfaNI | GCATC | 4 cut(s) | 81, 231, 978, 1207 |
| SfcI | CTRYAG | 1 cut(s) | 129 |
| SfoI | GGCGCC | 3 cut(s) | 489, 883, 919 |
| Sfr274I | CTCGAG | 1 cut(s) | 1001 |
| SinI | GGWCC | 7 cut(s) | 144, 260, 336, 427, 1040, 1056, 1167 |
| SlaI | CTCGAG | 1 cut(s) | 1001 |
| SmaI | CCCGGG | 1 cut(s) | 1124 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 111, 570 |
| SmlI | CTYRAG | 1 cut(s) | 1001 |
| SmoI | CTYRAG | 1 cut(s) | 1001 |
| Sse9I | AATT | 1 cut(s) | 621 |
| SspDI | GGCGCC | 3 cut(s) | 487, 881, 917 |
| SspMI | CTAG | 1 cut(s) | 1149 |
| StyD4I | CCNGG | 8 cut(s) | 42, 185, 224, 251, 305, 704, 1121, 1122 |
| StyI | CCWWGG | 2 cut(s) | 109, 765 |
| TaaI | ACNGT | 4 cut(s) | 34, 133, 217, 277 |
| TaiI | ACGT | 3 cut(s) | 53, 897, 1092 |
| TaqI | TCGA | 5 cut(s) | 461, 786, 924, 1002, 1187 |
| TasI | AATT | 1 cut(s) | 621 |
| TscAI | CASTG | 4 cut(s) | 138, 477, 505, 1210 |
| TseFI | GTSAC | 2 cut(s) | 328, 1181 |
| Tsp45I | GTSAC | 2 cut(s) | 328, 1181 |
| TspDTI | ATGAA | 1 cut(s) | 523 |
| TspGWI | ACGGA | 2 cut(s) | 253, 302 |
| TspMI | CCCGGG | 1 cut(s) | 1122 |
| TspRI | CASTG | 4 cut(s) | 138, 477, 505, 1210 |
| VpaK11BI | GGWCC | 7 cut(s) | 144, 260, 336, 427, 1040, 1056, 1167 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 107, 772 |
| XhoI | CTCGAG | 1 cut(s) | 1001 |
| XmaI | CCCGGG | 1 cut(s) | 1122 |
| XspI | CTAG | 1 cut(s) | 1149 |