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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1544 |
| AatII | GACGTC | 1 cut(s) | 109 |
| Acc36I | ACCTGC | 2 cut(s) | 545, 1544 |
| AccB1I | GGYRCC | 3 cut(s) | 506, 1877, 2018 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 243, 571 |
| AccBSI | CCGCTC | 1 cut(s) | 1507 |
| AccII | CGCG | 8 cut(s) | 146, 870, 885, 892, 1044, 1232, 1451, 1855 |
| AccIII | TCCGGA | 1 cut(s) | 122 |
| AclWI | GGATC | 3 cut(s) | 133, 260, 1765 |
| AcoI | YGGCCR | 4 cut(s) | 6, 100, 1422, 1800 |
| AcsI | RAATTY | 1 cut(s) | 157 |
| AcuI | CTGAAG | 2 cut(s) | 501, 2241 |
| AcvI | CACGTG | 1 cut(s) | 15 |
| AcyI | GRCGYC | 3 cut(s) | 106, 1020, 1647 |
| AdeI | CACNNNGTG | 1 cut(s) | 473 |
| AfaI | GTAC | 4 cut(s) | 643, 1076, 1454, 1984 |
| AflII | CTTAAG | 1 cut(s) | 1292 |
| AflIII | ACRYGT | 2 cut(s) | 12, 568 |
| AgeI | ACCGGT | 1 cut(s) | 1217 |
| AgsI | TTSAA | 3 cut(s) | 751, 1676, 2015 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2151 |
| AhlI | ACTAGT | 1 cut(s) | 595 |
| AjiI | CACGTC | 1 cut(s) | 1408 |
| Alw21I | GWGCWC | 2 cut(s) | 469, 1546 |
| Alw26I | GTCTC | 4 cut(s) | 57, 983, 1112, 2138 |
| Alw44I | GTGCAC | 1 cut(s) | 465 |
| AlwI | GGATC | 3 cut(s) | 133, 260, 1765 |
| Ama87I | CYCGRG | 2 cut(s) | 2026, 2163 |
| Aor13HI | TCCGGA | 1 cut(s) | 122 |
| ApaI | GGGCCC | 1 cut(s) | 1360 |
| ApaLI | GTGCAC | 1 cut(s) | 465 |
| ApoI | RAATTY | 1 cut(s) | 157 |
| AseI | ATTAAT | 1 cut(s) | 81 |
| AsiGI | ACCGGT | 1 cut(s) | 1217 |
| AspLEI | GCGC | 9 cut(s) | 146, 590, 722, 892, 1046, 1129, 1291, 1855, 1916 |
| AsuC2I | CCSGG | 4 cut(s) | 292, 999, 1875, 2054 |
| AsuHPI | GGTGA | 4 cut(s) | 413, 485, 1199, 1696 |
| AvaI | CYCGRG | 2 cut(s) | 2026, 2163 |
| AxyI | CCTNAGG | 1 cut(s) | 741 |
| BaeGI | GKGCMC | 3 cut(s) | 469, 511, 1360 |
| BanI | GGYRCC | 3 cut(s) | 506, 1877, 2018 |
| BanII | GRGCYC | 2 cut(s) | 1360, 1546 |
| BauI | CACGAG | 3 cut(s) | 468, 978, 1426 |
| BbrPI | CACGTG | 1 cut(s) | 15 |
| BbsI | GAAGAC | 1 cut(s) | 1106 |
| Bbv12I | GWGCWC | 2 cut(s) | 469, 1546 |
| BccI | CCATC | 4 cut(s) | 75, 92, 359, 2126 |
| BceAI | ACGGC | 6 cut(s) | 447, 968, 1187, 1253, 1325, 2082 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1382, 1416, 1619, 1653 |
| BcnI | CCSGG | 4 cut(s) | 292, 999, 1875, 2054 |
| BcoDI | GTCTC | 4 cut(s) | 57, 983, 1112, 2138 |
| BcuI | ACTAGT | 1 cut(s) | 595 |
| BfaI | CTAG | 9 cut(s) | 63, 215, 275, 285, 485, 596, 945, 1436, 1794 |
| BfmI | CTRYAG | 7 cut(s) | 129, 230, 1641, 1775, 1901, 1917, 2157 |
| BfoI | RGCGCY | 5 cut(s) | 591, 723, 1130, 1292, 1917 |
| BfrI | CTTAAG | 1 cut(s) | 1292 |
| BfuAI | ACCTGC | 2 cut(s) | 545, 1544 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 296, 1208 |
| BglII | AGATCT | 1 cut(s) | 520 |
| BlpI | GCTNAGC | 1 cut(s) | 1130 |
| BmcAI | AGTACT | 1 cut(s) | 1984 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2151 |
| BmeT110I | CYCGRG | 2 cut(s) | 2026, 2163 |
| BmgBI | CACGTC | 1 cut(s) | 1408 |
| BmrI | ACTGGG | 2 cut(s) | 1362, 2077 |
| BmsI | GCATC | 9 cut(s) | 280, 379, 571, 1143, 1327, 1627, 1929, 1943, 2206 |
| BmuI | ACTGGG | 2 cut(s) | 1362, 2077 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1220 |
| BpiI | GAAGAC | 1 cut(s) | 1106 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 420, 452, 1424, 1456 |
| BpmI | CTGGAG | 5 cut(s) | 1502, 1547, 1838, 2132, 2232 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1882 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1130 |
| BpuEI | CTTGAG | 1 cut(s) | 1530 |
| BpuMI | CCSGG | 4 cut(s) | 292, 999, 1875, 2054 |
| Bsa29I | ATCGAT | 1 cut(s) | 1937 |
| BsaAI | YACGTR | 1 cut(s) | 15 |
| BsaBI | GATNNNNATC | 2 cut(s) | 270, 933 |
| BsaHI | GRCGYC | 3 cut(s) | 106, 1020, 1647 |
| BsaI | GGTCTC | 1 cut(s) | 2138 |
| BsaWI | WCCGGW | 4 cut(s) | 122, 205, 612, 1217 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 817, 847 |
| Bse118I | RCCGGY | 3 cut(s) | 1217, 1942, 2021 |
| Bse1I | ACTGG | 6 cut(s) | 351, 664, 911, 1148, 1357, 2083 |
| Bse21I | CCTNAGG | 1 cut(s) | 741 |
| Bse3DI | GCAATG | 1 cut(s) | 1041 |
| Bse8I | GATNNNNATC | 2 cut(s) | 270, 933 |
| BseAI | TCCGGA | 1 cut(s) | 122 |
| BseCI | ATCGAT | 1 cut(s) | 1937 |
| BseGI | GGATG | 4 cut(s) | 103, 394, 1342, 2137 |
| BseJI | GATNNNNATC | 2 cut(s) | 270, 933 |
| BseMI | GCAATG | 1 cut(s) | 1041 |
| BseMII | CTCAG | 6 cut(s) | 78, 732, 1109, 2079, 2081, 2164 |
| BseNI | ACTGG | 6 cut(s) | 351, 664, 911, 1148, 1357, 2083 |
| BseRI | GAGGAG | 3 cut(s) | 45, 984, 1346 |
| BseSI | GKGCMC | 3 cut(s) | 469, 511, 1360 |
| BseYI | CCCAGC | 4 cut(s) | 948, 1211, 1510, 2102 |
| BsgI | GTGCAG | 1 cut(s) | 210 |
| Bsh1236I | CGCG | 8 cut(s) | 146, 870, 885, 892, 1044, 1232, 1451, 1855 |
| BshNI | GGYRCC | 3 cut(s) | 506, 1877, 2018 |
| BshTI | ACCGGT | 1 cut(s) | 1217 |
| BshVI | ATCGAT | 1 cut(s) | 1937 |
| BsiHKAI | GWGCWC | 2 cut(s) | 469, 1546 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2026, 2163 |
| BsiWI | CGTACG | 1 cut(s) | 1452 |
| BslFI | GGGAC | 4 cut(s) | 260, 783, 1228, 1694 |
| BsmAI | GTCTC | 4 cut(s) | 57, 983, 1112, 2138 |
| BsmBI | CGTCTC | 1 cut(s) | 1112 |
| BsmFI | GGGAC | 4 cut(s) | 260, 783, 1228, 1694 |
| Bso31I | GGTCTC | 1 cut(s) | 2138 |
| BsoBI | CYCGRG | 2 cut(s) | 2026, 2163 |
| Bsp120I | GGGCCC | 1 cut(s) | 1356 |
| Bsp1286I | GDGCHC | 4 cut(s) | 469, 511, 1360, 1546 |
| Bsp13I | TCCGGA | 1 cut(s) | 122 |
| Bsp143I | GATC | 7 cut(s) | 125, 265, 520, 730, 964, 1738, 1770 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1130 |
| Bsp68I | TCGCGA | 1 cut(s) | 870 |
| BspCNI | CTCAG | 6 cut(s) | 79, 733, 1108, 2080, 2080, 2163 |
| BspDI | ATCGAT | 1 cut(s) | 1937 |
| BspEI | TCCGGA | 1 cut(s) | 122 |
| BspFNI | CGCG | 8 cut(s) | 146, 870, 885, 892, 1044, 1232, 1451, 1855 |
| BspMAI | CTGCAG | 3 cut(s) | 1645, 1779, 1905 |
| BspMI | ACCTGC | 2 cut(s) | 545, 1544 |
| BspPI | GGATC | 3 cut(s) | 133, 260, 1765 |
| BspQI | GCTCTTC | 1 cut(s) | 666 |
| BspT107I | GGYRCC | 3 cut(s) | 506, 1877, 2018 |
| BspTI | CTTAAG | 1 cut(s) | 1292 |
| BspTNI | GGTCTC | 1 cut(s) | 2138 |
| BsrBI | CCGCTC | 1 cut(s) | 1507 |
| BsrDI | GCAATG | 1 cut(s) | 1041 |
| BsrFI | RCCGGY | 3 cut(s) | 1217, 1942, 2021 |
| BsrI | ACTGG | 6 cut(s) | 351, 664, 911, 1148, 1357, 2083 |
| BssAI | RCCGGY | 3 cut(s) | 1217, 1942, 2021 |
| BssMI | GATC | 7 cut(s) | 125, 265, 520, 730, 964, 1738, 1770 |
| BssNI | GRCGYC | 3 cut(s) | 106, 1020, 1647 |
| BssSI | CACGAG | 3 cut(s) | 468, 978, 1426 |
| BssT1I | CCWWGG | 2 cut(s) | 713, 1752 |
| Bst2BI | CACGAG | 3 cut(s) | 468, 978, 1426 |
| Bst4CI | ACNGT | 6 cut(s) | 422, 632, 1105, 1475, 1634, 1701 |
| Bst6I | CTCTTC | 3 cut(s) | 666, 870, 1323 |
| BstACI | GRCGYC | 3 cut(s) | 106, 1020, 1647 |
| BstAFI | CTTAAG | 1 cut(s) | 1292 |
| BstBAI | YACGTR | 1 cut(s) | 15 |
| BstDEI | CTNAG | 9 cut(s) | 87, 741, 1095, 1130, 1566, 1882, 2067, 2088, 2150 |
| BstDSI | CCRYGG | 3 cut(s) | 631, 1341, 1651 |
| BstF5I | GGATG | 4 cut(s) | 103, 394, 1342, 2137 |
| BstFNI | CGCG | 8 cut(s) | 146, 870, 885, 892, 1044, 1232, 1451, 1855 |
| BstH2I | RGCGCY | 5 cut(s) | 591, 723, 1130, 1292, 1917 |
| BstHHI | GCGC | 9 cut(s) | 146, 590, 722, 892, 1046, 1129, 1291, 1855, 1916 |
| BstKTI | GATC | 7 cut(s) | 128, 268, 523, 733, 967, 1741, 1773 |
| BstMAI | GTCTC | 4 cut(s) | 57, 983, 1112, 2138 |
| BstMBI | GATC | 7 cut(s) | 125, 265, 520, 730, 964, 1738, 1770 |
| BstNSI | RCATGY | 1 cut(s) | 572 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1220 |
| BstSFI | CTRYAG | 7 cut(s) | 129, 230, 1641, 1775, 1901, 1917, 2157 |
| BstSLI | GKGCMC | 3 cut(s) | 469, 511, 1360 |
| BstUI | CGCG | 8 cut(s) | 146, 870, 885, 892, 1044, 1232, 1451, 1855 |
| BstV2I | GAAGAC | 1 cut(s) | 1106 |
| BstX2I | RGATCY | 3 cut(s) | 125, 520, 1770 |
| BstYI | RGATCY | 3 cut(s) | 125, 520, 1770 |
| Bsu15I | ATCGAT | 1 cut(s) | 1937 |
| Bsu36I | CCTNAGG | 1 cut(s) | 741 |
| BsuTUI | ATCGAT | 1 cut(s) | 1937 |
| BtgI | CCRYGG | 3 cut(s) | 631, 1341, 1651 |
| BtrI | CACGTC | 1 cut(s) | 1408 |
| BtsCI | GGATG | 4 cut(s) | 103, 394, 1342, 2137 |
| BtsIMutI | CAGTG | 2 cut(s) | 358, 1155 |
| BtuMI | TCGCGA | 1 cut(s) | 870 |
| BveI | ACCTGC | 2 cut(s) | 545, 1544 |
| CfoI | GCGC | 9 cut(s) | 146, 590, 722, 892, 1046, 1129, 1291, 1855, 1916 |
| Cfr10I | RCCGGY | 3 cut(s) | 1217, 1942, 2021 |
| ClaI | ATCGAT | 1 cut(s) | 1937 |
| CpoI | CGGWCCG | 1 cut(s) | 1857 |
| CseI | GACGC | 5 cut(s) | 399, 1028, 1129, 1623, 1655 |
| Csp6I | GTAC | 4 cut(s) | 642, 1075, 1453, 1983 |
| CspAI | ACCGGT | 1 cut(s) | 1217 |
| CspI | CGGWCCG | 1 cut(s) | 1857 |
| CviAII | CATG | 4 cut(s) | 569, 1016, 1162, 1948 |
| CviQI | GTAC | 4 cut(s) | 642, 1075, 1453, 1983 |
| DdeI | CTNAG | 9 cut(s) | 87, 741, 1095, 1130, 1566, 1882, 2067, 2088, 2150 |
| DpnI | GATC | 7 cut(s) | 127, 267, 522, 732, 966, 1740, 1772 |
| DpnII | GATC | 7 cut(s) | 125, 265, 520, 730, 964, 1738, 1770 |
| DraIII | CACNNNGTG | 1 cut(s) | 473 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2151 |
| EaeI | YGGCCR | 4 cut(s) | 6, 100, 1422, 1800 |
| Eam1104I | CTCTTC | 3 cut(s) | 666, 870, 1323 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2151 |
| EarI | CTCTTC | 3 cut(s) | 666, 870, 1323 |
| EciI | GGCGGA | 7 cut(s) | 48, 164, 403, 651, 925, 2061, 2144 |
| Ecl136II | GAGCTC | 1 cut(s) | 1544 |
| Eco130I | CCWWGG | 2 cut(s) | 713, 1752 |
| Eco147I | AGGCCT | 2 cut(s) | 435, 1264 |
| Eco24I | GRGCYC | 2 cut(s) | 1360, 1546 |
| Eco31I | GGTCTC | 1 cut(s) | 2138 |
| Eco53kI | GAGCTC | 1 cut(s) | 1544 |
| Eco57I | CTGAAG | 2 cut(s) | 501, 2241 |
| Eco72I | CACGTG | 1 cut(s) | 15 |
| Eco81I | CCTNAGG | 1 cut(s) | 741 |
| Eco88I | CYCGRG | 2 cut(s) | 2026, 2163 |
| EcoICRI | GAGCTC | 1 cut(s) | 1544 |
| EcoO109I | RGGNCCY | 4 cut(s) | 770, 1356, 1385, 1681 |
| EcoT14I | CCWWGG | 2 cut(s) | 713, 1752 |
| EcoT38I | GRGCYC | 2 cut(s) | 1360, 1546 |
| ErhI | CCWWGG | 2 cut(s) | 713, 1752 |
| Esp3I | CGTCTC | 1 cut(s) | 1112 |
| FaeI | CATG | 4 cut(s) | 572, 1019, 1165, 1951 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1559, 1591 |
| FaqI | GGGAC | 4 cut(s) | 260, 783, 1228, 1694 |
| FatI | CATG | 4 cut(s) | 568, 1015, 1161, 1947 |
| FauI | CCCGC | 8 cut(s) | 373, 443, 508, 757, 801, 1225, 1367, 1773 |
| FokI | GGATG | 4 cut(s) | 110, 401, 1349, 2144 |
| FriOI | GRGCYC | 2 cut(s) | 1360, 1546 |
| FspBI | CTAG | 9 cut(s) | 63, 215, 275, 285, 485, 596, 945, 1436, 1794 |
| GlaI | GCGC | 9 cut(s) | 145, 589, 721, 891, 1045, 1128, 1290, 1854, 1915 |
| GsaI | CCCAGC | 4 cut(s) | 952, 1215, 1514, 2106 |
| GsuI | CTGGAG | 5 cut(s) | 1502, 1547, 1838, 2132, 2232 |
| HaeII | RGCGCY | 5 cut(s) | 591, 723, 1130, 1292, 1917 |
| HgaI | GACGC | 5 cut(s) | 399, 1028, 1129, 1623, 1655 |
| HhaI | GCGC | 9 cut(s) | 146, 590, 722, 892, 1046, 1129, 1291, 1855, 1916 |
| Hin1I | GRCGYC | 3 cut(s) | 106, 1020, 1647 |
| Hin1II | CATG | 4 cut(s) | 572, 1019, 1165, 1951 |
| Hin6I | GCGC | 9 cut(s) | 144, 588, 720, 890, 1044, 1127, 1289, 1853, 1914 |
| HinP1I | GCGC | 9 cut(s) | 144, 588, 720, 890, 1044, 1127, 1289, 1853, 1914 |
| HphI | GGTGA | 4 cut(s) | 413, 485, 1199, 1696 |
| Hpy166II | GTNNAC | 6 cut(s) | 425, 457, 467, 698, 1111, 1704 |
| Hpy188I | TCNGA | 6 cut(s) | 520, 1098, 1260, 1321, 2089, 2173 |
| Hpy188III | TCNNGA | 4 cut(s) | 123, 263, 275, 869 |
| Hpy8I | GTNNAC | 6 cut(s) | 425, 457, 467, 698, 1111, 1704 |
| Hpy99I | CGWCG | 7 cut(s) | 108, 422, 712, 792, 834, 1274, 1617 |
| HpyCH4III | ACNGT | 6 cut(s) | 422, 632, 1105, 1475, 1634, 1701 |
| HpyCH4IV | ACGT | 5 cut(s) | 14, 106, 249, 832, 1407 |
| HpyCH4V | TGCA | 8 cut(s) | 191, 319, 467, 685, 1643, 1735, 1777, 1903 |
| HpyF3I | CTNAG | 9 cut(s) | 87, 741, 1095, 1130, 1566, 1882, 2067, 2088, 2150 |
| HpySE526I | ACGT | 5 cut(s) | 14, 106, 249, 832, 1407 |
| Hsp92I | GRCGYC | 3 cut(s) | 106, 1020, 1647 |
| Hsp92II | CATG | 4 cut(s) | 572, 1019, 1165, 1951 |
| HspAI | GCGC | 9 cut(s) | 144, 588, 720, 890, 1044, 1127, 1289, 1853, 1914 |
| Kpn2I | TCCGGA | 1 cut(s) | 122 |
| KroI | GCCGGC | 1 cut(s) | 2021 |
| KroNI | GCCGGC | 1 cut(s) | 2023 |
| Kzo9I | GATC | 7 cut(s) | 125, 265, 520, 730, 964, 1738, 1770 |
| LguI | GCTCTTC | 1 cut(s) | 666 |
| LmnI | GCTCC | 5 cut(s) | 717, 825, 1240, 1550, 1972 |
| LweI | GCATC | 9 cut(s) | 280, 379, 571, 1143, 1327, 1627, 1929, 1943, 2206 |
| MaeI | CTAG | 9 cut(s) | 63, 215, 275, 285, 485, 596, 945, 1436, 1794 |
| MaeII | ACGT | 5 cut(s) | 14, 106, 249, 832, 1407 |
| MaeIII | GTNAC | 5 cut(s) | 491, 854, 902, 1222, 1571 |
| MalI | GATC | 7 cut(s) | 127, 267, 522, 732, 966, 1740, 1772 |
| MbiI | CCGCTC | 1 cut(s) | 1507 |
| MboI | GATC | 7 cut(s) | 125, 265, 520, 730, 964, 1738, 1770 |
| MboII | GAAGA | 8 cut(s) | 435, 683, 884, 887, 929, 1111, 1340, 1381 |
| MfeI | CAATTG | 1 cut(s) | 1709 |
| MflI | RGATCY | 3 cut(s) | 125, 520, 1770 |
| MhlI | GDGCHC | 4 cut(s) | 469, 511, 1360, 1546 |
| MluCI | AATT | 3 cut(s) | 157, 1709, 2185 |
| MmeI | TCCRAC | 4 cut(s) | 839, 1218, 1344, 2196 |
| MroI | TCCGGA | 1 cut(s) | 122 |
| MroNI | GCCGGC | 1 cut(s) | 2021 |
| MseI | TTAA | 4 cut(s) | 81, 842, 1293, 1809 |
| MspA1I | CMGCKG | 8 cut(s) | 305, 450, 503, 1780, 1838, 2071, 2210, 2250 |
| MspCI | CTTAAG | 1 cut(s) | 1292 |
| MunI | CAATTG | 1 cut(s) | 1709 |
| MvnI | CGCG | 8 cut(s) | 146, 870, 885, 892, 1044, 1232, 1451, 1855 |
| NaeI | GCCGGC | 1 cut(s) | 2023 |
| NciI | CCSGG | 4 cut(s) | 292, 999, 1875, 2054 |
| NdeII | GATC | 7 cut(s) | 125, 265, 520, 730, 964, 1738, 1770 |
| NgoMIV | GCCGGC | 1 cut(s) | 2021 |
| NlaIII | CATG | 4 cut(s) | 572, 1019, 1165, 1951 |
| NmeAIII | GCCGAG | 3 cut(s) | 418, 1483, 1828 |
| NmuCI | GTSAC | 3 cut(s) | 491, 1222, 1571 |
| NruI | TCGCGA | 1 cut(s) | 870 |
| NspI | RCATGY | 1 cut(s) | 572 |
| PaqCI | CACCTGC | 1 cut(s) | 1544 |
| PceI | AGGCCT | 2 cut(s) | 435, 1264 |
| PciI | ACATGT | 1 cut(s) | 568 |
| PciSI | GCTCTTC | 1 cut(s) | 666 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 176, 1059 |
| PdiI | GCCGGC | 1 cut(s) | 2023 |
| PfeI | GAWTC | 7 cut(s) | 119, 440, 747, 894, 913, 1067, 2063 |
| Pfl23II | CGTACG | 1 cut(s) | 1452 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 243, 571 |
| PfoI | TCCNGGA | 3 cut(s) | 997, 2052, 2109 |
| PinAI | ACCGGT | 1 cut(s) | 1217 |
| PmaCI | CACGTG | 1 cut(s) | 15 |
| PmlI | CACGTG | 1 cut(s) | 15 |
| Ppu21I | YACGTR | 1 cut(s) | 15 |
| PpuMI | RGGWCCY | 3 cut(s) | 770, 1385, 1681 |
| PscI | ACATGT | 1 cut(s) | 568 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1220 |
| PshBI | ATTAAT | 1 cut(s) | 81 |
| Psp124BI | GAGCTC | 1 cut(s) | 1546 |
| Psp5II | RGGWCCY | 3 cut(s) | 770, 1385, 1681 |
| PspCI | CACGTG | 1 cut(s) | 15 |
| PspFI | CCCAGC | 4 cut(s) | 948, 1211, 1510, 2102 |
| PspLI | CGTACG | 1 cut(s) | 1452 |
| PspOMI | GGGCCC | 1 cut(s) | 1356 |
| PspPPI | RGGWCCY | 3 cut(s) | 770, 1385, 1681 |
| PstI | CTGCAG | 3 cut(s) | 1645, 1779, 1905 |
| PsuI | RGATCY | 3 cut(s) | 125, 520, 1770 |
| PvuII | CAGCTG | 1 cut(s) | 2210 |
| RruI | TCGCGA | 1 cut(s) | 870 |
| RsaI | GTAC | 4 cut(s) | 643, 1076, 1454, 1984 |
| RsaNI | GTAC | 4 cut(s) | 642, 1075, 1453, 1983 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1857 |
| RsrII | CGGWCCG | 1 cut(s) | 1857 |
| SacI | GAGCTC | 1 cut(s) | 1546 |
| SapI | GCTCTTC | 1 cut(s) | 666 |
| SaqAI | TTAA | 4 cut(s) | 81, 842, 1293, 1809 |
| Sau3AI | GATC | 7 cut(s) | 125, 265, 520, 730, 964, 1738, 1770 |
| ScaI | AGTACT | 1 cut(s) | 1984 |
| SduI | GDGCHC | 4 cut(s) | 469, 511, 1360, 1546 |
| SfaNI | GCATC | 9 cut(s) | 280, 379, 571, 1143, 1327, 1627, 1929, 1943, 2206 |
| SfcI | CTRYAG | 7 cut(s) | 129, 230, 1641, 1775, 1901, 1917, 2157 |
| SmlI | CTYRAG | 2 cut(s) | 1292, 1545 |
| SmoI | CTYRAG | 2 cut(s) | 1292, 1545 |
| SpeI | ACTAGT | 1 cut(s) | 595 |
| Sse9I | AATT | 3 cut(s) | 157, 1709, 2185 |
| SseBI | AGGCCT | 2 cut(s) | 435, 1264 |
| SspMI | CTAG | 9 cut(s) | 63, 215, 275, 285, 485, 596, 945, 1436, 1794 |
| SstI | GAGCTC | 1 cut(s) | 1546 |
| StuI | AGGCCT | 2 cut(s) | 435, 1264 |
| StyI | CCWWGG | 2 cut(s) | 713, 1752 |
| TaaI | ACNGT | 6 cut(s) | 422, 632, 1105, 1475, 1634, 1701 |
| TaiI | ACGT | 5 cut(s) | 17, 109, 252, 835, 1410 |
| TaqI | TCGA | 6 cut(s) | 222, 438, 733, 963, 1053, 1937 |
| TaqII | GACCGA | 1 cut(s) | 1874 |
| TasI | AATT | 3 cut(s) | 157, 1709, 2185 |
| TatI | WGTACW | 1 cut(s) | 1982 |
| TfiI | GAWTC | 7 cut(s) | 119, 440, 747, 894, 913, 1067, 2063 |
| Tru1I | TTAA | 4 cut(s) | 81, 842, 1293, 1809 |
| Tru9I | TTAA | 4 cut(s) | 81, 842, 1293, 1809 |
| TscAI | CASTG | 2 cut(s) | 358, 1155 |
| TseFI | GTSAC | 3 cut(s) | 491, 1222, 1571 |
| Tsp45I | GTSAC | 3 cut(s) | 491, 1222, 1571 |
| TspDTI | ATGAA | 1 cut(s) | 923 |
| TspGWI | ACGGA | 2 cut(s) | 168, 1705 |
| TspRI | CASTG | 2 cut(s) | 358, 1155 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 243, 571 |
| Vha464I | CTTAAG | 1 cut(s) | 1292 |
| VneI | GTGCAC | 1 cut(s) | 465 |
| VspI | ATTAAT | 1 cut(s) | 81 |
| XapI | RAATTY | 1 cut(s) | 157 |
| XbaI | TCTAGA | 1 cut(s) | 274 |
| XceI | RCATGY | 1 cut(s) | 572 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1178 |
| XspI | CTAG | 9 cut(s) | 63, 215, 275, 285, 485, 596, 945, 1436, 1794 |
| ZraI | GACGTC | 1 cut(s) | 107 |
| ZrmI | AGTACT | 1 cut(s) | 1984 |