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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 919 |
| AatII | GACGTC | 1 cut(s) | 1656 |
| Acc65I | GGTACC | 6 cut(s) | 33, 160, 218, 942, 978, 2345 |
| AccB1I | GGYRCC | 9 cut(s) | 33, 160, 218, 942, 978, 1540, 1585, 1715, 2345 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2422 |
| AccBSI | CCGCTC | 1 cut(s) | 1479 |
| AccI | GTMKAC | 2 cut(s) | 1134, 1325 |
| AccII | CGCG | 2 cut(s) | 1266, 1271 |
| AccIII | TCCGGA | 1 cut(s) | 434 |
| AclI | AACGTT | 1 cut(s) | 1853 |
| AclWI | GGATC | 1 cut(s) | 1296 |
| AcoI | YGGCCR | 1 cut(s) | 1171 |
| AcsI | RAATTY | 1 cut(s) | 1755 |
| AcuI | CTGAAG | 3 cut(s) | 1613, 2096, 2478 |
| AcvI | CACGTG | 2 cut(s) | 140, 316 |
| AcyI | GRCGYC | 3 cut(s) | 1586, 1653, 2357 |
| AflIII | ACRYGT | 2 cut(s) | 1269, 2430 |
| AgsI | TTSAA | 5 cut(s) | 106, 1221, 1826, 1858, 2217 |
| AjnI | CCWGG | 5 cut(s) | 1030, 1246, 1905, 2024, 2397 |
| AleI | CACNNNNGTG | 1 cut(s) | 1967 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1770, 1802 |
| AluBI | AGCT | 8 cut(s) | 1149, 1300, 1864, 1927, 1986, 2074, 2177, 2472 |
| AluI | AGCT | 8 cut(s) | 1149, 1300, 1864, 1927, 1986, 2074, 2177, 2472 |
| Alw26I | GTCTC | 1 cut(s) | 1385 |
| AlwI | GGATC | 1 cut(s) | 1296 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1624 |
| Ama87I | CYCGRG | 9 cut(s) | 24, 73, 151, 200, 281, 1072, 1144, 1313, 1482 |
| Aor13HI | TCCGGA | 1 cut(s) | 434 |
| ApaI | GGGCCC | 3 cut(s) | 229, 1095, 1524 |
| ApeKI | GCWGC | 7 cut(s) | 1098, 1414, 1436, 1452, 1624, 1975, 2516 |
| ApoI | RAATTY | 1 cut(s) | 1755 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1830 |
| Asp718I | GGTACC | 6 cut(s) | 33, 160, 218, 942, 978, 2345 |
| AspLEI | GCGC | 3 cut(s) | 1436, 1588, 1975 |
| AsuHPI | GGTGA | 7 cut(s) | 1390, 1414, 1603, 2102, 2203, 2365, 2437 |
| AvaI | CYCGRG | 9 cut(s) | 24, 73, 151, 200, 281, 1072, 1144, 1313, 1482 |
| AvaII | GGWCC | 5 cut(s) | 1442, 1879, 1903, 2118, 2255 |
| BaeGI | GKGCMC | 3 cut(s) | 229, 1095, 1524 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2337, 2370 |
| BanI | GGYRCC | 9 cut(s) | 33, 160, 218, 942, 978, 1540, 1585, 1715, 2345 |
| BanII | GRGCYC | 6 cut(s) | 229, 1095, 1338, 1524, 2018, 2366 |
| BauI | CACGAG | 4 cut(s) | 176, 1884, 2048, 2334 |
| BbrPI | CACGTG | 2 cut(s) | 140, 316 |
| BbsI | GAAGAC | 1 cut(s) | 1494 |
| BbvCI | CCTCAGC | 3 cut(s) | 1811, 1896, 2520 |
| BbvI | GCAGC | 7 cut(s) | 1110, 1401, 1423, 1439, 1611, 1987, 2503 |
| BceAI | ACGGC | 2 cut(s) | 1655, 1818 |
| BciT130I | CCWGG | 5 cut(s) | 1032, 1248, 1907, 2026, 2399 |
| BciVI | GTATCC | 2 cut(s) | 234, 248 |
| BclI | TGATCA | 1 cut(s) | 2383 |
| BcoDI | GTCTC | 1 cut(s) | 1385 |
| BfmI | CTRYAG | 1 cut(s) | 91 |
| BfoI | RGCGCY | 2 cut(s) | 1437, 1589 |
| BfuI | GTATCC | 2 cut(s) | 234, 248 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1594 |
| Bme18I | GGWCC | 5 cut(s) | 1442, 1879, 1903, 2118, 2255 |
| BmeT110I | CYCGRG | 9 cut(s) | 24, 73, 151, 200, 281, 1072, 1144, 1313, 1482 |
| BmrI | ACTGGG | 1 cut(s) | 2287 |
| BmuI | ACTGGG | 1 cut(s) | 2287 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2253 |
| BpiI | GAAGAC | 1 cut(s) | 1494 |
| BpmI | CTGGAG | 1 cut(s) | 2145 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1811, 1896, 2520 |
| BpuEI | CTTGAG | 6 cut(s) | 113, 289, 575, 718, 902, 938 |
| BsaAI | YACGTR | 2 cut(s) | 140, 316 |
| BsaHI | GRCGYC | 3 cut(s) | 1586, 1653, 2357 |
| BsaWI | WCCGGW | 4 cut(s) | 237, 434, 981, 1129 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1770, 1800, 1838, 1868 |
| Bse118I | RCCGGY | 3 cut(s) | 1173, 1439, 1543 |
| Bse1I | ACTGG | 3 cut(s) | 1384, 2293, 2416 |
| Bse3DI | GCAATG | 1 cut(s) | 1290 |
| BseAI | TCCGGA | 1 cut(s) | 434 |
| BseBI | CCWGG | 5 cut(s) | 1032, 1248, 1907, 2026, 2399 |
| BseGI | GGATG | 3 cut(s) | 1126, 1954, 2269 |
| BseMI | GCAATG | 1 cut(s) | 1290 |
| BseMII | CTCAG | 5 cut(s) | 1358, 1386, 1802, 1887, 2511 |
| BseNI | ACTGG | 3 cut(s) | 1384, 2293, 2416 |
| BseSI | GKGCMC | 3 cut(s) | 229, 1095, 1524 |
| BseX3I | CGGCCG | 1 cut(s) | 1171 |
| BseXI | GCAGC | 7 cut(s) | 1110, 1401, 1423, 1439, 1611, 1987, 2503 |
| BseYI | CCCAGC | 2 cut(s) | 1331, 2402 |
| BsgI | GTGCAG | 1 cut(s) | 1314 |
| Bsh1236I | CGCG | 2 cut(s) | 1266, 1271 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1174 |
| BshNI | GGYRCC | 9 cut(s) | 33, 160, 218, 942, 978, 1540, 1585, 1715, 2345 |
| BsiEI | CGRYCG | 1 cut(s) | 1174 |
| BsiHKCI | CYCGRG | 9 cut(s) | 24, 73, 151, 200, 281, 1072, 1144, 1313, 1482 |
| BslFI | GGGAC | 5 cut(s) | 1037, 1091, 1476, 1865, 2290 |
| BsmAI | GTCTC | 1 cut(s) | 1385 |
| BsmFI | GGGAC | 5 cut(s) | 1037, 1091, 1476, 1865, 2290 |
| BsoBI | CYCGRG | 9 cut(s) | 24, 73, 151, 200, 281, 1072, 1144, 1313, 1482 |
| Bsp120I | GGGCCC | 3 cut(s) | 225, 1091, 1520 |
| Bsp1286I | GDGCHC | 6 cut(s) | 229, 1095, 1338, 1524, 2018, 2366 |
| Bsp13I | TCCGGA | 1 cut(s) | 434 |
| Bsp143I | GATC | 4 cut(s) | 1204, 1288, 1872, 2383 |
| Bsp19I | CCATGG | 4 cut(s) | 1158, 1563, 2251, 2349 |
| BspCNI | CTCAG | 5 cut(s) | 1357, 1387, 1803, 1888, 2512 |
| BspEI | TCCGGA | 1 cut(s) | 434 |
| BspFNI | CGCG | 2 cut(s) | 1266, 1271 |
| BspHI | TCATGA | 1 cut(s) | 48 |
| BspPI | GGATC | 1 cut(s) | 1296 |
| BspT107I | GGYRCC | 9 cut(s) | 33, 160, 218, 942, 978, 1540, 1585, 1715, 2345 |
| BsrBI | CCGCTC | 1 cut(s) | 1479 |
| BsrDI | GCAATG | 1 cut(s) | 1290 |
| BsrFI | RCCGGY | 3 cut(s) | 1173, 1439, 1543 |
| BsrI | ACTGG | 3 cut(s) | 1384, 2293, 2416 |
| BssAI | RCCGGY | 3 cut(s) | 1173, 1439, 1543 |
| BssMI | GATC | 4 cut(s) | 1204, 1288, 1872, 2383 |
| BssNAI | GTATAC | 2 cut(s) | 1135, 1326 |
| BssNI | GRCGYC | 3 cut(s) | 1586, 1653, 2357 |
| BssSI | CACGAG | 4 cut(s) | 176, 1884, 2048, 2334 |
| BssT1I | CCWWGG | 8 cut(s) | 1158, 1563, 1592, 1890, 2019, 2251, 2349, 2374 |
| Bst1107I | GTATAC | 2 cut(s) | 1135, 1326 |
| Bst2BI | CACGAG | 4 cut(s) | 176, 1884, 2048, 2334 |
| Bst2UI | CCWGG | 5 cut(s) | 1032, 1248, 1907, 2026, 2399 |
| Bst4CI | ACNGT | 3 cut(s) | 1697, 1933, 2345 |
| Bst6I | CTCTTC | 1 cut(s) | 1659 |
| BstACI | GRCGYC | 3 cut(s) | 1586, 1653, 2357 |
| BstBAI | YACGTR | 2 cut(s) | 140, 316 |
| BstC8I | GCNNGC | 6 cut(s) | 1124, 1457, 1545, 1584, 2059, 2175 |
| BstDEI | CTNAG | 6 cut(s) | 1344, 1395, 1811, 1896, 2483, 2520 |
| BstDSI | CCRYGG | 5 cut(s) | 1158, 1445, 1563, 2251, 2349 |
| BstEII | GGTNACC | 1 cut(s) | 1609 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 435, 1835 |
| BstF5I | GGATG | 3 cut(s) | 1126, 1954, 2269 |
| BstFNI | CGCG | 2 cut(s) | 1266, 1271 |
| BstH2I | RGCGCY | 2 cut(s) | 1437, 1589 |
| BstHHI | GCGC | 3 cut(s) | 1436, 1588, 1975 |
| BstKTI | GATC | 4 cut(s) | 1207, 1291, 1875, 2386 |
| BstMAI | GTCTC | 1 cut(s) | 1385 |
| BstMBI | GATC | 4 cut(s) | 1204, 1288, 1872, 2383 |
| BstMCI | CGRYCG | 1 cut(s) | 1174 |
| BstNI | CCWGG | 5 cut(s) | 1032, 1248, 1907, 2026, 2399 |
| BstNSI | RCATGY | 5 cut(s) | 1126, 1324, 1918, 2033, 2155 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2253 |
| BstPI | GGTNACC | 1 cut(s) | 1609 |
| BstSFI | CTRYAG | 1 cut(s) | 91 |
| BstSLI | GKGCMC | 3 cut(s) | 229, 1095, 1524 |
| BstUI | CGCG | 2 cut(s) | 1266, 1271 |
| BstV1I | GCAGC | 7 cut(s) | 1110, 1401, 1423, 1439, 1611, 1987, 2503 |
| BstV2I | GAAGAC | 1 cut(s) | 1494 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2032 |
| BstZ17I | GTATAC | 2 cut(s) | 1135, 1326 |
| BstZI | CGGCCG | 1 cut(s) | 1171 |
| BsuI | GTATCC | 2 cut(s) | 234, 248 |
| BtgI | CCRYGG | 5 cut(s) | 1158, 1445, 1563, 2251, 2349 |
| BtsCI | GGATG | 3 cut(s) | 1126, 1954, 2269 |
| BtsI | GCAGTG | 1 cut(s) | 2282 |
| BtsIMutI | CAGTG | 1 cut(s) | 2282 |
| Cac8I | GCNNGC | 6 cut(s) | 1124, 1457, 1545, 1584, 2059, 2175 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1624 |
| CciI | TCATGA | 1 cut(s) | 48 |
| CfoI | GCGC | 3 cut(s) | 1436, 1588, 1975 |
| Cfr10I | RCCGGY | 3 cut(s) | 1173, 1439, 1543 |
| Cfr9I | CCCGGG | 3 cut(s) | 73, 200, 281 |
| CpoI | CGGWCCG | 1 cut(s) | 1442 |
| CseI | GACGC | 3 cut(s) | 922, 1277, 2365 |
| CspI | CGGWCCG | 1 cut(s) | 1442 |
| DdeI | CTNAG | 6 cut(s) | 1344, 1395, 1811, 1896, 2483, 2520 |
| DinI | GGCGCC | 1 cut(s) | 1587 |
| DpnI | GATC | 4 cut(s) | 1206, 1290, 1874, 2385 |
| DpnII | GATC | 4 cut(s) | 1204, 1288, 1872, 2383 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 919 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 919 |
| EaeI | YGGCCR | 1 cut(s) | 1171 |
| EagI | CGGCCG | 1 cut(s) | 1171 |
| Eam1104I | CTCTTC | 1 cut(s) | 1659 |
| EarI | CTCTTC | 1 cut(s) | 1659 |
| EciI | GGCGGA | 3 cut(s) | 1657, 1925, 2276 |
| EclXI | CGGCCG | 1 cut(s) | 1171 |
| Eco130I | CCWWGG | 8 cut(s) | 1158, 1563, 1592, 1890, 2019, 2251, 2349, 2374 |
| Eco147I | AGGCCT | 4 cut(s) | 89, 1597, 1830, 2147 |
| Eco24I | GRGCYC | 6 cut(s) | 229, 1095, 1338, 1524, 2018, 2366 |
| Eco47I | GGWCC | 5 cut(s) | 1442, 1879, 1903, 2118, 2255 |
| Eco52I | CGGCCG | 1 cut(s) | 1171 |
| Eco57I | CTGAAG | 3 cut(s) | 1613, 2096, 2478 |
| Eco72I | CACGTG | 2 cut(s) | 140, 316 |
| Eco88I | CYCGRG | 9 cut(s) | 24, 73, 151, 200, 281, 1072, 1144, 1313, 1482 |
| Eco91I | GGTNACC | 1 cut(s) | 1609 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 435, 1835 |
| EcoO109I | RGGNCCY | 6 cut(s) | 96, 225, 1092, 1521, 1879, 2118 |
| EcoO65I | GGTNACC | 1 cut(s) | 1609 |
| EcoRII | CCWGG | 5 cut(s) | 1030, 1246, 1905, 2024, 2397 |
| EcoT14I | CCWWGG | 8 cut(s) | 1158, 1563, 1592, 1890, 2019, 2251, 2349, 2374 |
| EcoT22I | ATGCAT | 1 cut(s) | 1128 |
| EcoT38I | GRGCYC | 6 cut(s) | 229, 1095, 1338, 1524, 2018, 2366 |
| EgeI | GGCGCC | 1 cut(s) | 1587 |
| EheI | GGCGCC | 1 cut(s) | 1587 |
| ErhI | CCWWGG | 8 cut(s) | 1158, 1563, 1592, 1890, 2019, 2251, 2349, 2374 |
| FaqI | GGGAC | 5 cut(s) | 1037, 1091, 1476, 1865, 2290 |
| FauI | CCCGC | 5 cut(s) | 27, 981, 1103, 1120, 1452 |
| FbaI | TGATCA | 1 cut(s) | 2383 |
| FblI | GTMKAC | 2 cut(s) | 1134, 1325 |
| FokI | GGATG | 3 cut(s) | 1113, 1961, 2276 |
| FriOI | GRGCYC | 6 cut(s) | 229, 1095, 1338, 1524, 2018, 2366 |
| GlaI | GCGC | 3 cut(s) | 1435, 1587, 1974 |
| GsaI | CCCAGC | 2 cut(s) | 1335, 2406 |
| GsuI | CTGGAG | 1 cut(s) | 2145 |
| HaeII | RGCGCY | 2 cut(s) | 1437, 1589 |
| HgaI | GACGC | 3 cut(s) | 922, 1277, 2365 |
| HhaI | GCGC | 3 cut(s) | 1436, 1588, 1975 |
| Hin1I | GRCGYC | 3 cut(s) | 1586, 1653, 2357 |
| Hin6I | GCGC | 3 cut(s) | 1434, 1586, 1973 |
| HinP1I | GCGC | 3 cut(s) | 1434, 1586, 1973 |
| HindIII | AAGCTT | 1 cut(s) | 2175 |
| HinfI | GANTC | 4 cut(s) | 274, 1734, 1767, 2038 |
| HphI | GGTGA | 7 cut(s) | 1390, 1414, 1603, 2102, 2203, 2365, 2437 |
| Hpy166II | GTNNAC | 4 cut(s) | 1135, 1326, 1903, 2428 |
| Hpy8I | GTNNAC | 4 cut(s) | 1135, 1326, 1903, 2428 |
| Hpy99I | CGWCG | 3 cut(s) | 1271, 1658, 1688 |
| HpyCH4III | ACNGT | 3 cut(s) | 1697, 1933, 2345 |
| HpyCH4IV | ACGT | 6 cut(s) | 139, 315, 1152, 1653, 1853, 2432 |
| HpyCH4V | TGCA | 6 cut(s) | 1126, 1295, 1417, 2002, 2155, 2272 |
| HpyF3I | CTNAG | 6 cut(s) | 1344, 1395, 1811, 1896, 2483, 2520 |
| HpySE526I | ACGT | 6 cut(s) | 139, 315, 1152, 1653, 1853, 2432 |
| Hsp92I | GRCGYC | 3 cut(s) | 1586, 1653, 2357 |
| HspAI | GCGC | 3 cut(s) | 1434, 1586, 1973 |
| KasI | GGCGCC | 1 cut(s) | 1585 |
| Kpn2I | TCCGGA | 1 cut(s) | 434 |
| KpnI | GGTACC | 6 cut(s) | 37, 164, 222, 946, 982, 2349 |
| KroI | GCCGGC | 1 cut(s) | 1543 |
| KroNI | GCCGGC | 1 cut(s) | 1545 |
| Ksp22I | TGATCA | 1 cut(s) | 2383 |
| Kzo9I | GATC | 4 cut(s) | 1204, 1288, 1872, 2383 |
| LmnI | GCTCC | 6 cut(s) | 1341, 1484, 1576, 1846, 2021, 2448 |
| Lsp1109I | GCAGC | 7 cut(s) | 1110, 1401, 1423, 1439, 1611, 1987, 2503 |
| MaeII | ACGT | 6 cut(s) | 139, 315, 1152, 1653, 1853, 2432 |
| MaeIII | GTNAC | 9 cut(s) | 140, 173, 316, 1034, 1250, 1558, 1609, 1691, 2353 |
| MalI | GATC | 4 cut(s) | 1206, 1290, 1874, 2385 |
| MbiI | CCGCTC | 1 cut(s) | 1479 |
| MboI | GATC | 4 cut(s) | 1204, 1288, 1872, 2383 |
| MboII | GAAGA | 7 cut(s) | 1499, 1645, 1676, 2033, 2089, 2092, 2471 |
| MhlI | GDGCHC | 6 cut(s) | 229, 1095, 1338, 1524, 2018, 2366 |
| MluCI | AATT | 1 cut(s) | 1755 |
| MluI | ACGCGT | 1 cut(s) | 1269 |
| Mly113I | GGCGCC | 1 cut(s) | 1586 |
| MlyI | GAGTC | 1 cut(s) | 1728 |
| MmeI | TCCRAC | 4 cut(s) | 1368, 1554, 1848, 2277 |
| Mph1103I | ATGCAT | 1 cut(s) | 1128 |
| MroI | TCCGGA | 1 cut(s) | 434 |
| MroNI | GCCGGC | 1 cut(s) | 1543 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1830 |
| MseI | TTAA | 3 cut(s) | 11, 119, 2532 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1967, 2334 |
| MspA1I | CMGCKG | 2 cut(s) | 1331, 2516 |
| MvaI | CCWGG | 5 cut(s) | 1032, 1248, 1907, 2026, 2399 |
| MvnI | CGCG | 2 cut(s) | 1266, 1271 |
| NaeI | GCCGGC | 1 cut(s) | 1545 |
| NarI | GGCGCC | 1 cut(s) | 1586 |
| NcoI | CCATGG | 4 cut(s) | 1158, 1563, 2251, 2349 |
| NdeII | GATC | 4 cut(s) | 1204, 1288, 1872, 2383 |
| NgoMIV | GCCGGC | 1 cut(s) | 1543 |
| NmeAIII | GCCGAG | 2 cut(s) | 1786, 2385 |
| NmuCI | GTSAC | 7 cut(s) | 140, 173, 316, 1034, 1609, 1691, 2353 |
| NsiI | ATGCAT | 1 cut(s) | 1128 |
| NspI | RCATGY | 5 cut(s) | 1126, 1324, 1918, 2033, 2155 |
| OliI | CACNNNNGTG | 1 cut(s) | 1967 |
| PaeI | GCATGC | 1 cut(s) | 1126 |
| PaeR7I | CTCGAG | 1 cut(s) | 1313 |
| PagI | TCATGA | 1 cut(s) | 48 |
| PceI | AGGCCT | 4 cut(s) | 89, 1597, 1830, 2147 |
| PdiI | GCCGGC | 1 cut(s) | 1545 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1830 |
| PfeI | GAWTC | 3 cut(s) | 274, 1767, 2038 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2422 |
| PfoI | TCCNGGA | 1 cut(s) | 611 |
| PleI | GAGTC | 1 cut(s) | 1728 |
| PluTI | GGCGCC | 1 cut(s) | 1589 |
| PmaCI | CACGTG | 2 cut(s) | 140, 316 |
| PmlI | CACGTG | 2 cut(s) | 140, 316 |
| PpsI | GAGTC | 1 cut(s) | 1728 |
| Ppu21I | YACGTR | 2 cut(s) | 140, 316 |
| PpuMI | RGGWCCY | 2 cut(s) | 1879, 2118 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2253 |
| Psp1406I | AACGTT | 1 cut(s) | 1853 |
| Psp5II | RGGWCCY | 2 cut(s) | 1879, 2118 |
| Psp6I | CCWGG | 5 cut(s) | 1030, 1246, 1905, 2024, 2397 |
| PspCI | CACGTG | 2 cut(s) | 140, 316 |
| PspEI | GGTNACC | 1 cut(s) | 1609 |
| PspFI | CCCAGC | 2 cut(s) | 1331, 2402 |
| PspGI | CCWGG | 5 cut(s) | 1030, 1246, 1905, 2024, 2397 |
| PspOMI | GGGCCC | 3 cut(s) | 225, 1091, 1520 |
| PspPPI | RGGWCCY | 2 cut(s) | 1879, 2118 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1624 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1967, 2334 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1442 |
| RsrII | CGGWCCG | 1 cut(s) | 1442 |
| SaqAI | TTAA | 3 cut(s) | 11, 119, 2532 |
| Sau3AI | GATC | 4 cut(s) | 1204, 1288, 1872, 2383 |
| SchI | GAGTC | 1 cut(s) | 1728 |
| SduI | GDGCHC | 6 cut(s) | 229, 1095, 1338, 1524, 2018, 2366 |
| SfcI | CTRYAG | 1 cut(s) | 91 |
| SfoI | GGCGCC | 1 cut(s) | 1587 |
| Sfr274I | CTCGAG | 1 cut(s) | 1313 |
| SinI | GGWCC | 5 cut(s) | 1442, 1879, 1903, 2118, 2255 |
| SlaI | CTCGAG | 1 cut(s) | 1313 |
| SmaI | CCCGGG | 3 cut(s) | 75, 202, 283 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1967, 2334 |
| SmlI | CTYRAG | 7 cut(s) | 128, 304, 590, 733, 917, 953, 1313 |
| SmoI | CTYRAG | 7 cut(s) | 128, 304, 590, 733, 917, 953, 1313 |
| SphI | GCATGC | 1 cut(s) | 1126 |
| Sse9I | AATT | 1 cut(s) | 1755 |
| SseBI | AGGCCT | 4 cut(s) | 89, 1597, 1830, 2147 |
| SspDI | GGCGCC | 1 cut(s) | 1585 |
| StuI | AGGCCT | 4 cut(s) | 89, 1597, 1830, 2147 |
| StyI | CCWWGG | 8 cut(s) | 1158, 1563, 1592, 1890, 2019, 2251, 2349, 2374 |
| TaaI | ACNGT | 3 cut(s) | 1697, 1933, 2345 |
| TaiI | ACGT | 6 cut(s) | 142, 318, 1155, 1656, 1856, 2435 |
| TaqI | TCGA | 5 cut(s) | 1275, 1314, 1656, 1875, 2313 |
| TaqII | GACCGA | 1 cut(s) | 1779 |
| TasI | AATT | 1 cut(s) | 1755 |
| TauI | GCSGC | 9 cut(s) | 1479, 1508, 1582, 1721, 2135, 2327, 2397, 2415, 2516 |
| TfiI | GAWTC | 3 cut(s) | 274, 1767, 2038 |
| Tru1I | TTAA | 3 cut(s) | 11, 119, 2532 |
| Tru9I | TTAA | 3 cut(s) | 11, 119, 2532 |
| TscAI | CASTG | 1 cut(s) | 2289 |
| TseFI | GTSAC | 7 cut(s) | 140, 173, 316, 1034, 1609, 1691, 2353 |
| TseI | GCWGC | 7 cut(s) | 1098, 1414, 1436, 1452, 1624, 1975, 2516 |
| Tsp45I | GTSAC | 7 cut(s) | 140, 173, 316, 1034, 1609, 1691, 2353 |
| TspDTI | ATGAA | 1 cut(s) | 2033 |
| TspGWI | ACGGA | 1 cut(s) | 1434 |
| TspMI | CCCGGG | 3 cut(s) | 73, 200, 281 |
| TspRI | CASTG | 1 cut(s) | 2289 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2422 |
| VpaK11BI | GGWCC | 5 cut(s) | 1442, 1879, 1903, 2118, 2255 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 435, 1835 |
| XapI | RAATTY | 1 cut(s) | 1755 |
| XceI | RCATGY | 5 cut(s) | 1126, 1324, 1918, 2033, 2155 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1570, 1897 |
| XhoI | CTCGAG | 1 cut(s) | 1313 |
| XmaI | CCCGGG | 3 cut(s) | 73, 200, 281 |
| XmiI | GTMKAC | 2 cut(s) | 1134, 1325 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1830 |
| ZraI | GACGTC | 1 cut(s) | 1654 |
| Zsp2I | ATGCAT | 1 cut(s) | 1128 |