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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 203, 239, 332, 449 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 249 |
| AccBSI | CCGCTC | 1 cut(s) | 339 |
| AccII | CGCG | 3 cut(s) | 126, 275, 480 |
| AclWI | GGATC | 3 cut(s) | 115, 128, 490 |
| AcoI | YGGCCR | 2 cut(s) | 15, 210 |
| AcuI | CTGAAG | 1 cut(s) | 543 |
| AcyI | GRCGYC | 3 cut(s) | 240, 260, 407 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 49, 130, 249, 322, 403, 439 |
| AgsI | TTSAA | 2 cut(s) | 38, 47 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 465 |
| AjnI | CCWGG | 2 cut(s) | 105, 207 |
| AluBI | AGCT | 2 cut(s) | 85, 284 |
| AluI | AGCT | 2 cut(s) | 85, 284 |
| Alw26I | GTCTC | 1 cut(s) | 452 |
| AlwI | GGATC | 3 cut(s) | 115, 128, 490 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 140 |
| Ama87I | CYCGRG | 2 cut(s) | 340, 438 |
| AoxI | GGCC | 6 cut(s) | 15, 69, 198, 210, 313, 430 |
| ApeKI | GCWGC | 4 cut(s) | 128, 134, 226, 229 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 42 |
| AspLEI | GCGC | 4 cut(s) | 128, 242, 277, 362 |
| AspS9I | GGNCC | 3 cut(s) | 314, 387, 430 |
| AsuC2I | CCSGG | 2 cut(s) | 439, 440 |
| AsuHPI | GGTGA | 1 cut(s) | 104 |
| AvaI | CYCGRG | 2 cut(s) | 340, 438 |
| AvaII | GGWCC | 1 cut(s) | 387 |
| BaeGI | GKGCMC | 2 cut(s) | 208, 337 |
| BalI | TGGCCA | 1 cut(s) | 212 |
| BamHI | GGATCC | 1 cut(s) | 120 |
| BanI | GGYRCC | 4 cut(s) | 203, 239, 332, 449 |
| BbvCI | CCTCAGC | 1 cut(s) | 114 |
| BbvI | GCAGC | 4 cut(s) | 115, 146, 213, 241 |
| BccI | CCATC | 2 cut(s) | 323, 440 |
| BciT130I | CCWGG | 2 cut(s) | 107, 209 |
| BcnI | CCSGG | 2 cut(s) | 439, 440 |
| BcoDI | GTCTC | 1 cut(s) | 452 |
| BfaI | CTAG | 2 cut(s) | 63, 285 |
| BfmI | CTRYAG | 2 cut(s) | 227, 471 |
| BfoI | RGCGCY | 2 cut(s) | 243, 363 |
| Bme1390I | CCNGG | 4 cut(s) | 107, 209, 439, 440 |
| Bme18I | GGWCC | 1 cut(s) | 387 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 465 |
| BmeT110I | CYCGRG | 2 cut(s) | 340, 438 |
| BmgT120I | GGNCC | 3 cut(s) | 314, 387, 430 |
| BmiI | GGNNCC | 7 cut(s) | 122, 205, 241, 316, 334, 389, 451 |
| BmrFI | CCNGG | 4 cut(s) | 107, 209, 439, 440 |
| BmrI | ACTGGG | 2 cut(s) | 259, 391 |
| BmsI | GCATC | 1 cut(s) | 280 |
| BmuI | ACTGGG | 2 cut(s) | 259, 391 |
| BpmI | CTGGAG | 2 cut(s) | 107, 128 |
| Bpu10I | CCTNAGC | 1 cut(s) | 114 |
| BpuMI | CCSGG | 2 cut(s) | 439, 440 |
| BsaHI | GRCGYC | 3 cut(s) | 240, 260, 407 |
| BsaI | GGTCTC | 1 cut(s) | 452 |
| BsaJI | CCNNGG | 5 cut(s) | 21, 72, 207, 438, 478 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 49, 130, 249, 322, 403, 439 |
| Bse118I | RCCGGY | 1 cut(s) | 200 |
| Bse1I | ACTGG | 2 cut(s) | 254, 397 |
| BseBI | CCWGG | 2 cut(s) | 107, 209 |
| BseDI | CCNNGG | 5 cut(s) | 21, 72, 207, 438, 478 |
| BseGI | GGATG | 3 cut(s) | 295, 379, 451 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 49, 130, 249, 322, 403, 439 |
| BseMII | CTCAG | 2 cut(s) | 105, 335 |
| BseNI | ACTGG | 2 cut(s) | 254, 397 |
| BseSI | GKGCMC | 2 cut(s) | 208, 337 |
| BseXI | GCAGC | 4 cut(s) | 115, 146, 213, 241 |
| Bsh1236I | CGCG | 3 cut(s) | 126, 275, 480 |
| Bsh1285I | CGRYCG | 1 cut(s) | 273 |
| BshFI | GGCC | 6 cut(s) | 17, 71, 200, 212, 315, 432 |
| BshNI | GGYRCC | 4 cut(s) | 203, 239, 332, 449 |
| BsiEI | CGRYCG | 1 cut(s) | 273 |
| BsiHKCI | CYCGRG | 2 cut(s) | 340, 438 |
| BsiSI | CCGG | 3 cut(s) | 201, 439, 515 |
| BslFI | GGGAC | 1 cut(s) | 394 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 49, 130, 249, 322, 403, 439 |
| BsmAI | GTCTC | 1 cut(s) | 452 |
| BsmFI | GGGAC | 1 cut(s) | 394 |
| BsnI | GGCC | 6 cut(s) | 17, 71, 200, 212, 315, 432 |
| Bso31I | GGTCTC | 1 cut(s) | 452 |
| BsoBI | CYCGRG | 2 cut(s) | 340, 438 |
| Bsp1286I | GDGCHC | 2 cut(s) | 208, 337 |
| Bsp143I | GATC | 4 cut(s) | 7, 120, 270, 482 |
| BspANI | GGCC | 6 cut(s) | 17, 71, 200, 212, 315, 432 |
| BspCNI | CTCAG | 2 cut(s) | 106, 334 |
| BspFNI | CGCG | 3 cut(s) | 126, 275, 480 |
| BspLI | GGNNCC | 7 cut(s) | 122, 205, 241, 316, 334, 389, 451 |
| BspMAI | CTGCAG | 1 cut(s) | 231 |
| BspPI | GGATC | 3 cut(s) | 115, 128, 490 |
| BspT107I | GGYRCC | 4 cut(s) | 203, 239, 332, 449 |
| BspTNI | GGTCTC | 1 cut(s) | 452 |
| BsrBI | CCGCTC | 1 cut(s) | 339 |
| BsrFI | RCCGGY | 1 cut(s) | 200 |
| BsrI | ACTGG | 2 cut(s) | 254, 397 |
| BssAI | RCCGGY | 1 cut(s) | 200 |
| BssECI | CCNNGG | 5 cut(s) | 21, 72, 207, 438, 478 |
| BssMI | GATC | 4 cut(s) | 7, 120, 270, 482 |
| BssNI | GRCGYC | 3 cut(s) | 240, 260, 407 |
| BssT1I | CCWWGG | 1 cut(s) | 21 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 209 |
| BstACI | GRCGYC | 3 cut(s) | 240, 260, 407 |
| BstC8I | GCNNGC | 5 cut(s) | 103, 282, 337, 430, 478 |
| BstDEI | CTNAG | 2 cut(s) | 114, 321 |
| BstDSI | CCRYGG | 1 cut(s) | 478 |
| BstF5I | GGATG | 3 cut(s) | 295, 379, 451 |
| BstFNI | CGCG | 3 cut(s) | 126, 275, 480 |
| BstH2I | RGCGCY | 2 cut(s) | 243, 363 |
| BstHHI | GCGC | 4 cut(s) | 128, 242, 277, 362 |
| BstKTI | GATC | 4 cut(s) | 10, 123, 273, 485 |
| BstMAI | GTCTC | 1 cut(s) | 452 |
| BstMBI | GATC | 4 cut(s) | 7, 120, 270, 482 |
| BstMCI | CGRYCG | 1 cut(s) | 273 |
| BstNI | CCWGG | 2 cut(s) | 107, 209 |
| BstSCI | CCNGG | 4 cut(s) | 105, 207, 437, 438 |
| BstSFI | CTRYAG | 2 cut(s) | 227, 471 |
| BstSLI | GKGCMC | 2 cut(s) | 208, 337 |
| BstUI | CGCG | 3 cut(s) | 126, 275, 480 |
| BstV1I | GCAGC | 4 cut(s) | 115, 146, 213, 241 |
| BstX2I | RGATCY | 2 cut(s) | 120, 482 |
| BstYI | RGATCY | 2 cut(s) | 120, 482 |
| BsuRI | GGCC | 6 cut(s) | 17, 71, 200, 212, 315, 432 |
| BtgI | CCRYGG | 1 cut(s) | 478 |
| BtsCI | GGATG | 3 cut(s) | 295, 379, 451 |
| BtsIMutI | CAGTG | 1 cut(s) | 179 |
| Cac8I | GCNNGC | 5 cut(s) | 103, 282, 337, 430, 478 |
| CaiI | CAGNNNCTG | 1 cut(s) | 140 |
| CfoI | GCGC | 4 cut(s) | 128, 242, 277, 362 |
| Cfr10I | RCCGGY | 1 cut(s) | 200 |
| Cfr13I | GGNCC | 3 cut(s) | 314, 387, 430 |
| Cfr42I | CCGCGG | 1 cut(s) | 481 |
| Cfr9I | CCCGGG | 1 cut(s) | 438 |
| CseI | GACGC | 3 cut(s) | 249, 396, 527 |
| CviAII | CATG | 1 cut(s) | 265 |
| DdeI | CTNAG | 2 cut(s) | 114, 321 |
| DinI | GGCGCC | 1 cut(s) | 241 |
| DpnI | GATC | 4 cut(s) | 9, 122, 272, 484 |
| DpnII | GATC | 4 cut(s) | 7, 120, 270, 482 |
| DriI | GACNNNNNGTC | 1 cut(s) | 465 |
| EaeI | YGGCCR | 2 cut(s) | 15, 210 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 465 |
| EciI | GGCGGA | 2 cut(s) | 179, 458 |
| Eco130I | CCWWGG | 1 cut(s) | 21 |
| Eco31I | GGTCTC | 1 cut(s) | 452 |
| Eco47I | GGWCC | 1 cut(s) | 387 |
| Eco57I | CTGAAG | 1 cut(s) | 543 |
| Eco88I | CYCGRG | 2 cut(s) | 340, 438 |
| EcoRII | CCWGG | 2 cut(s) | 105, 207 |
| EcoT14I | CCWWGG | 1 cut(s) | 21 |
| EgeI | GGCGCC | 1 cut(s) | 241 |
| EheI | GGCGCC | 1 cut(s) | 241 |
| ErhI | CCWWGG | 1 cut(s) | 21 |
| FaeI | CATG | 1 cut(s) | 268 |
| FaiI | YATR | 5 cut(s) | 151, 171, 266, 435, 455 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 346, 378, 540 |
| FaqI | GGGAC | 1 cut(s) | 394 |
| FatI | CATG | 1 cut(s) | 264 |
| FauI | CCCGC | 3 cut(s) | 344, 421, 485 |
| FokI | GGATG | 3 cut(s) | 302, 386, 458 |
| FspBI | CTAG | 2 cut(s) | 63, 285 |
| GlaI | GCGC | 4 cut(s) | 127, 241, 276, 361 |
| GsuI | CTGGAG | 2 cut(s) | 107, 128 |
| HaeII | RGCGCY | 2 cut(s) | 243, 363 |
| HaeIII | GGCC | 6 cut(s) | 17, 71, 200, 212, 315, 432 |
| HapII | CCGG | 3 cut(s) | 201, 439, 515 |
| HgaI | GACGC | 3 cut(s) | 249, 396, 527 |
| HhaI | GCGC | 4 cut(s) | 128, 242, 277, 362 |
| Hin1I | GRCGYC | 3 cut(s) | 240, 260, 407 |
| Hin1II | CATG | 1 cut(s) | 268 |
| Hin6I | GCGC | 4 cut(s) | 126, 240, 275, 360 |
| HinP1I | GCGC | 4 cut(s) | 126, 240, 275, 360 |
| HinfI | GANTC | 3 cut(s) | 53, 146, 377 |
| HpaII | CCGG | 3 cut(s) | 201, 439, 515 |
| HphI | GGTGA | 1 cut(s) | 104 |
| Hpy188I | TCNGA | 3 cut(s) | 403, 487, 569 |
| HpyAV | CCTTC | 6 cut(s) | 25, 53, 169, 190, 518, 533 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 229, 302 |
| HpyF3I | CTNAG | 2 cut(s) | 114, 321 |
| Hsp92I | GRCGYC | 3 cut(s) | 240, 260, 407 |
| Hsp92II | CATG | 1 cut(s) | 268 |
| HspAI | GCGC | 4 cut(s) | 126, 240, 275, 360 |
| KasI | GGCGCC | 1 cut(s) | 239 |
| KspI | CCGCGG | 1 cut(s) | 481 |
| Kzo9I | GATC | 4 cut(s) | 7, 120, 270, 482 |
| LmnI | GCTCC | 1 cut(s) | 298 |
| Lsp1109I | GCAGC | 4 cut(s) | 115, 146, 213, 241 |
| LweI | GCATC | 1 cut(s) | 280 |
| MaeI | CTAG | 2 cut(s) | 63, 285 |
| MalI | GATC | 4 cut(s) | 9, 122, 272, 484 |
| MbiI | CCGCTC | 1 cut(s) | 339 |
| MboI | GATC | 4 cut(s) | 7, 120, 270, 482 |
| MflI | RGATCY | 2 cut(s) | 120, 482 |
| MhlI | GDGCHC | 2 cut(s) | 208, 337 |
| MlsI | TGGCCA | 1 cut(s) | 212 |
| MluNI | TGGCCA | 1 cut(s) | 212 |
| Mly113I | GGCGCC | 1 cut(s) | 240 |
| MlyI | GAGTC | 3 cut(s) | 62, 155, 371 |
| MmeI | TCCRAC | 1 cut(s) | 381 |
| MnlI | CCTC | 6 cut(s) | 67, 82, 103, 109, 328, 397 |
| Mox20I | TGGCCA | 1 cut(s) | 212 |
| MroXI | GAANNNNTTC | 1 cut(s) | 42 |
| MscI | TGGCCA | 1 cut(s) | 212 |
| MseI | TTAA | 1 cut(s) | 78 |
| Msp20I | TGGCCA | 1 cut(s) | 212 |
| MspA1I | CMGCKG | 3 cut(s) | 85, 140, 480 |
| MspI | CCGG | 3 cut(s) | 201, 439, 515 |
| MspR9I | CCNGG | 4 cut(s) | 107, 209, 439, 440 |
| MvaI | CCWGG | 2 cut(s) | 107, 209 |
| MvnI | CGCG | 3 cut(s) | 126, 275, 480 |
| NarI | GGCGCC | 1 cut(s) | 240 |
| NciI | CCSGG | 2 cut(s) | 439, 440 |
| NdeII | GATC | 4 cut(s) | 7, 120, 270, 482 |
| NlaIII | CATG | 1 cut(s) | 268 |
| NlaIV | GGNNCC | 7 cut(s) | 122, 205, 241, 316, 334, 389, 451 |
| NmeAIII | GCCGAG | 2 cut(s) | 97, 442 |
| PdmI | GAANNNNTTC | 1 cut(s) | 42 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 249 |
| Ple19I | CGATCG | 1 cut(s) | 273 |
| PleI | GAGTC | 3 cut(s) | 61, 154, 371 |
| PluTI | GGCGCC | 1 cut(s) | 243 |
| PpsI | GAGTC | 3 cut(s) | 61, 154, 371 |
| Psp6I | CCWGG | 2 cut(s) | 105, 207 |
| PspGI | CCWGG | 2 cut(s) | 105, 207 |
| PspN4I | GGNNCC | 7 cut(s) | 122, 205, 241, 316, 334, 389, 451 |
| PspPI | GGNCC | 3 cut(s) | 314, 387, 430 |
| PstI | CTGCAG | 1 cut(s) | 231 |
| PstNI | CAGNNNCTG | 1 cut(s) | 140 |
| PsuI | RGATCY | 2 cut(s) | 120, 482 |
| PvuI | CGATCG | 1 cut(s) | 273 |
| PvuII | CAGCTG | 1 cut(s) | 85 |
| SacII | CCGCGG | 1 cut(s) | 481 |
| SaqAI | TTAA | 1 cut(s) | 78 |
| Sau3AI | GATC | 4 cut(s) | 7, 120, 270, 482 |
| Sau96I | GGNCC | 3 cut(s) | 314, 387, 430 |
| SchI | GAGTC | 3 cut(s) | 62, 155, 371 |
| ScrFI | CCNGG | 4 cut(s) | 107, 209, 439, 440 |
| SduI | GDGCHC | 2 cut(s) | 208, 337 |
| SetI | ASST | 8 cut(s) | 36, 78, 87, 286, 327, 529, 558, 567 |
| SfaNI | GCATC | 1 cut(s) | 280 |
| SfcI | CTRYAG | 2 cut(s) | 227, 471 |
| SfoI | GGCGCC | 1 cut(s) | 241 |
| Sfr303I | CCGCGG | 1 cut(s) | 481 |
| SgrBI | CCGCGG | 1 cut(s) | 481 |
| SinI | GGWCC | 1 cut(s) | 387 |
| SmaI | CCCGGG | 1 cut(s) | 440 |
| SspDI | GGCGCC | 1 cut(s) | 239 |
| SspMI | CTAG | 2 cut(s) | 63, 285 |
| StyD4I | CCNGG | 4 cut(s) | 105, 207, 437, 438 |
| StyI | CCWWGG | 1 cut(s) | 21 |
| TaqII | GACCGA | 1 cut(s) | 200 |
| TauI | GCSGC | 8 cut(s) | 20, 62, 134, 140, 194, 280, 501, 514 |
| Tru1I | TTAA | 1 cut(s) | 78 |
| Tru9I | TTAA | 1 cut(s) | 78 |
| TscAI | CASTG | 1 cut(s) | 186 |
| TseI | GCWGC | 4 cut(s) | 128, 134, 226, 229 |
| TspGWI | ACGGA | 1 cut(s) | 285 |
| TspMI | CCCGGG | 1 cut(s) | 438 |
| TspRI | CASTG | 1 cut(s) | 186 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 249 |
| VpaK11BI | GGWCC | 1 cut(s) | 387 |
| XmaI | CCCGGG | 1 cut(s) | 438 |
| XmnI | GAANNNNTTC | 1 cut(s) | 42 |
| XspI | CTAG | 2 cut(s) | 63, 285 |