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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 305 |
| AccB1I | GGYRCC | 3 cut(s) | 257, 305, 618 |
| AccBSI | CCGCTC | 4 cut(s) | 311, 531, 679, 832 |
| AccII | CGCG | 2 cut(s) | 374, 795 |
| AclWI | GGATC | 2 cut(s) | 179, 574 |
| AcoI | YGGCCR | 1 cut(s) | 810 |
| AcuI | CTGAAG | 1 cut(s) | 534 |
| AcyI | GRCGYC | 2 cut(s) | 258, 267 |
| AfaI | GTAC | 2 cut(s) | 149, 307 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 299, 315, 352, 670, 766, 859 |
| AgsI | TTSAA | 2 cut(s) | 590, 805 |
| AjnI | CCWGG | 2 cut(s) | 783, 852 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 327, 359 |
| AluBI | AGCT | 5 cut(s) | 124, 606, 643, 718, 739 |
| AluI | AGCT | 5 cut(s) | 124, 606, 643, 718, 739 |
| Alw21I | GWGCWC | 2 cut(s) | 466, 645 |
| Alw26I | GTCTC | 1 cut(s) | 710 |
| AlwI | GGATC | 2 cut(s) | 179, 574 |
| Ama87I | CYCGRG | 2 cut(s) | 40, 669 |
| AoxI | GGCC | 3 cut(s) | 20, 456, 810 |
| ApaI | GGGCCC | 1 cut(s) | 460 |
| ApeKI | GCWGC | 6 cut(s) | 164, 229, 238, 356, 362, 368 |
| Asp718I | GGTACC | 1 cut(s) | 305 |
| AspLEI | GCGC | 1 cut(s) | 260 |
| AspS9I | GGNCC | 6 cut(s) | 20, 277, 290, 456, 457, 571 |
| AsuC2I | CCSGG | 1 cut(s) | 72 |
| AsuHPI | GGTGA | 3 cut(s) | 57, 242, 508 |
| AsuII | TTCGAA | 1 cut(s) | 99 |
| AvaI | CYCGRG | 2 cut(s) | 40, 669 |
| AvaII | GGWCC | 3 cut(s) | 277, 290, 571 |
| BaeGI | GKGCMC | 2 cut(s) | 460, 621 |
| BalI | TGGCCA | 1 cut(s) | 812 |
| BanI | GGYRCC | 3 cut(s) | 257, 305, 618 |
| BanII | GRGCYC | 2 cut(s) | 460, 645 |
| Bbv12I | GWGCWC | 2 cut(s) | 466, 645 |
| BbvI | GCAGC | 6 cut(s) | 151, 216, 250, 343, 349, 355 |
| BccI | CCATC | 3 cut(s) | 188, 257, 557 |
| BceAI | ACGGC | 1 cut(s) | 369 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 146, 180 |
| BciT130I | CCWGG | 2 cut(s) | 785, 854 |
| BcnI | CCSGG | 1 cut(s) | 72 |
| BcoDI | GTCTC | 1 cut(s) | 710 |
| BfaI | CTAG | 1 cut(s) | 765 |
| BfoI | RGCGCY | 1 cut(s) | 261 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 161 |
| BlpI | GCTNAGC | 2 cut(s) | 607, 735 |
| Bme1390I | CCNGG | 3 cut(s) | 72, 785, 854 |
| Bme18I | GGWCC | 3 cut(s) | 277, 290, 571 |
| BmeT110I | CYCGRG | 2 cut(s) | 40, 669 |
| BmgT120I | GGNCC | 6 cut(s) | 20, 277, 290, 456, 457, 571 |
| BmiI | GGNNCC | 6 cut(s) | 259, 307, 336, 457, 458, 620 |
| BmrFI | CCNGG | 3 cut(s) | 72, 785, 854 |
| BmsI | GCATC | 5 cut(s) | 225, 475, 715, 769, 778 |
| BpmI | CTGGAG | 3 cut(s) | 318, 474, 875 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 607, 735 |
| Bpu14I | TTCGAA | 1 cut(s) | 99 |
| BpuEI | CTTGAG | 1 cut(s) | 297 |
| BpuMI | CCSGG | 1 cut(s) | 72 |
| Bsa29I | ATCGAT | 1 cut(s) | 183 |
| BsaHI | GRCGYC | 2 cut(s) | 258, 267 |
| BsaI | GGTCTC | 1 cut(s) | 710 |
| BsaJI | CCNNGG | 8 cut(s) | 253, 273, 372, 668, 709, 729, 783, 793 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 131, 161 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 299, 315, 352, 670, 766, 859 |
| Bse1I | ACTGG | 1 cut(s) | 301 |
| BseBI | CCWGG | 2 cut(s) | 785, 854 |
| BseCI | ATCGAT | 1 cut(s) | 183 |
| BseDI | CCNNGG | 8 cut(s) | 253, 273, 372, 668, 709, 729, 783, 793 |
| BseGI | GGATG | 4 cut(s) | 490, 568, 730, 793 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 299, 315, 352, 670, 766, 859 |
| BseMII | CTCAG | 4 cut(s) | 203, 479, 621, 677 |
| BseNI | ACTGG | 1 cut(s) | 301 |
| BseRI | GAGGAG | 5 cut(s) | 60, 315, 443, 446, 707 |
| BseSI | GKGCMC | 2 cut(s) | 460, 621 |
| BseXI | GCAGC | 6 cut(s) | 151, 216, 250, 343, 349, 355 |
| Bsh1236I | CGCG | 2 cut(s) | 374, 795 |
| Bsh1285I | CGRYCG | 1 cut(s) | 342 |
| BshFI | GGCC | 3 cut(s) | 22, 458, 812 |
| BshNI | GGYRCC | 3 cut(s) | 257, 305, 618 |
| BshVI | ATCGAT | 1 cut(s) | 183 |
| BsiEI | CGRYCG | 1 cut(s) | 342 |
| BsiHKAI | GWGCWC | 2 cut(s) | 466, 645 |
| BsiHKCI | CYCGRG | 2 cut(s) | 40, 669 |
| BsiSI | CCGG | 1 cut(s) | 71 |
| BslFI | GGGAC | 3 cut(s) | 254, 329, 875 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 299, 315, 352, 670, 766, 859 |
| BsmAI | GTCTC | 1 cut(s) | 710 |
| BsmFI | GGGAC | 3 cut(s) | 254, 329, 875 |
| BsmI | GAATGC | 1 cut(s) | 779 |
| BsnI | GGCC | 3 cut(s) | 22, 458, 812 |
| Bso31I | GGTCTC | 1 cut(s) | 710 |
| BsoBI | CYCGRG | 2 cut(s) | 40, 669 |
| Bsp119I | TTCGAA | 1 cut(s) | 99 |
| Bsp120I | GGGCCC | 1 cut(s) | 456 |
| Bsp1286I | GDGCHC | 4 cut(s) | 460, 466, 621, 645 |
| Bsp143I | GATC | 5 cut(s) | 184, 339, 441, 566, 880 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 607, 735 |
| BspANI | GGCC | 3 cut(s) | 22, 458, 812 |
| BspCNI | CTCAG | 4 cut(s) | 202, 478, 620, 678 |
| BspDI | ATCGAT | 1 cut(s) | 183 |
| BspFNI | CGCG | 2 cut(s) | 374, 795 |
| BspHI | TCATGA | 1 cut(s) | 444 |
| BspLI | GGNNCC | 6 cut(s) | 259, 307, 336, 457, 458, 620 |
| BspPI | GGATC | 2 cut(s) | 179, 574 |
| BspQI | GCTCTTC | 1 cut(s) | 650 |
| BspT104I | TTCGAA | 1 cut(s) | 99 |
| BspT107I | GGYRCC | 3 cut(s) | 257, 305, 618 |
| BspTNI | GGTCTC | 1 cut(s) | 710 |
| BsrBI | CCGCTC | 4 cut(s) | 311, 531, 679, 832 |
| BsrI | ACTGG | 1 cut(s) | 301 |
| BssECI | CCNNGG | 8 cut(s) | 253, 273, 372, 668, 709, 729, 783, 793 |
| BssMI | GATC | 5 cut(s) | 184, 339, 441, 566, 880 |
| BssNI | GRCGYC | 2 cut(s) | 258, 267 |
| BssT1I | CCWWGG | 3 cut(s) | 253, 709, 729 |
| Bst2UI | CCWGG | 2 cut(s) | 785, 854 |
| Bst4CI | ACNGT | 4 cut(s) | 86, 502, 508, 594 |
| Bst6I | CTCTTC | 1 cut(s) | 650 |
| BstACI | GRCGYC | 2 cut(s) | 258, 267 |
| BstBI | TTCGAA | 1 cut(s) | 99 |
| BstC8I | GCNNGC | 3 cut(s) | 665, 720, 793 |
| BstDEI | CTNAG | 5 cut(s) | 189, 465, 607, 686, 735 |
| BstDSI | CCRYGG | 3 cut(s) | 273, 372, 793 |
| BstF5I | GGATG | 4 cut(s) | 490, 568, 730, 793 |
| BstFNI | CGCG | 2 cut(s) | 374, 795 |
| BstH2I | RGCGCY | 1 cut(s) | 261 |
| BstHHI | GCGC | 1 cut(s) | 260 |
| BstKTI | GATC | 5 cut(s) | 187, 342, 444, 569, 883 |
| BstMAI | GTCTC | 1 cut(s) | 710 |
| BstMBI | GATC | 5 cut(s) | 184, 339, 441, 566, 880 |
| BstMCI | CGRYCG | 1 cut(s) | 342 |
| BstNI | CCWGG | 2 cut(s) | 785, 854 |
| BstNSI | RCATGY | 1 cut(s) | 148 |
| BstSCI | CCNGG | 3 cut(s) | 70, 783, 852 |
| BstSLI | GKGCMC | 2 cut(s) | 460, 621 |
| BstUI | CGCG | 2 cut(s) | 374, 795 |
| BstV1I | GCAGC | 6 cut(s) | 151, 216, 250, 343, 349, 355 |
| Bsu15I | ATCGAT | 1 cut(s) | 183 |
| BsuRI | GGCC | 3 cut(s) | 22, 458, 812 |
| BsuTUI | ATCGAT | 1 cut(s) | 183 |
| BtgI | CCRYGG | 3 cut(s) | 273, 372, 793 |
| BtgZI | GCGATG | 1 cut(s) | 792 |
| BtsCI | GGATG | 4 cut(s) | 490, 568, 730, 793 |
| BtsI | GCAGTG | 2 cut(s) | 57, 207 |
| BtsIMutI | CAGTG | 2 cut(s) | 57, 207 |
| Cac8I | GCNNGC | 3 cut(s) | 665, 720, 793 |
| CciI | TCATGA | 1 cut(s) | 444 |
| CfoI | GCGC | 1 cut(s) | 260 |
| Cfr13I | GGNCC | 6 cut(s) | 20, 277, 290, 456, 457, 571 |
| Cfr42I | CCGCGG | 2 cut(s) | 375, 796 |
| ClaI | ATCGAT | 1 cut(s) | 183 |
| CpoI | CGGWCCG | 1 cut(s) | 571 |
| CseI | GACGC | 1 cut(s) | 256 |
| Csp6I | GTAC | 2 cut(s) | 148, 306 |
| CspI | CGGWCCG | 1 cut(s) | 571 |
| CviAII | CATG | 4 cut(s) | 59, 145, 445, 638 |
| CviQI | GTAC | 2 cut(s) | 148, 306 |
| DdeI | CTNAG | 5 cut(s) | 189, 465, 607, 686, 735 |
| DinI | GGCGCC | 1 cut(s) | 259 |
| DpnI | GATC | 5 cut(s) | 186, 341, 443, 568, 882 |
| DpnII | GATC | 5 cut(s) | 184, 339, 441, 566, 880 |
| EaeI | YGGCCR | 1 cut(s) | 810 |
| Eam1104I | CTCTTC | 1 cut(s) | 650 |
| EarI | CTCTTC | 1 cut(s) | 650 |
| EciI | GGCGGA | 4 cut(s) | 134, 563, 737, 785 |
| Ecl136II | GAGCTC | 1 cut(s) | 643 |
| Eco130I | CCWWGG | 3 cut(s) | 253, 709, 729 |
| Eco24I | GRGCYC | 2 cut(s) | 460, 645 |
| Eco31I | GGTCTC | 1 cut(s) | 710 |
| Eco32I | GATATC | 1 cut(s) | 846 |
| Eco47I | GGWCC | 3 cut(s) | 277, 290, 571 |
| Eco53kI | GAGCTC | 1 cut(s) | 643 |
| Eco57I | CTGAAG | 1 cut(s) | 534 |
| Eco88I | CYCGRG | 2 cut(s) | 40, 669 |
| EcoICRI | GAGCTC | 1 cut(s) | 643 |
| EcoO109I | RGGNCCY | 1 cut(s) | 456 |
| EcoRII | CCWGG | 2 cut(s) | 783, 852 |
| EcoRV | GATATC | 1 cut(s) | 846 |
| EcoT14I | CCWWGG | 3 cut(s) | 253, 709, 729 |
| EcoT38I | GRGCYC | 2 cut(s) | 460, 645 |
| EgeI | GGCGCC | 1 cut(s) | 259 |
| EheI | GGCGCC | 1 cut(s) | 259 |
| ErhI | CCWWGG | 3 cut(s) | 253, 709, 729 |
| FaeI | CATG | 4 cut(s) | 62, 148, 448, 641 |
| FaiI | YATR | 9 cut(s) | 60, 110, 146, 446, 452, 601, 603, 639, 866 |
| FaqI | GGGAC | 3 cut(s) | 254, 329, 875 |
| FatI | CATG | 4 cut(s) | 58, 144, 444, 637 |
| FauI | CCCGC | 3 cut(s) | 354, 524, 800 |
| FokI | GGATG | 4 cut(s) | 497, 575, 737, 800 |
| FriOI | GRGCYC | 2 cut(s) | 460, 645 |
| FspBI | CTAG | 1 cut(s) | 765 |
| GlaI | GCGC | 1 cut(s) | 259 |
| GsuI | CTGGAG | 3 cut(s) | 318, 474, 875 |
| HaeII | RGCGCY | 1 cut(s) | 261 |
| HaeIII | GGCC | 3 cut(s) | 22, 458, 812 |
| HapII | CCGG | 1 cut(s) | 71 |
| HgaI | GACGC | 1 cut(s) | 256 |
| HhaI | GCGC | 1 cut(s) | 260 |
| Hin1I | GRCGYC | 2 cut(s) | 258, 267 |
| Hin1II | CATG | 4 cut(s) | 62, 148, 448, 641 |
| Hin6I | GCGC | 1 cut(s) | 258 |
| HinP1I | GCGC | 1 cut(s) | 258 |
| HindIII | AAGCTT | 1 cut(s) | 737 |
| HinfI | GANTC | 4 cut(s) | 62, 205, 539, 913 |
| HpaII | CCGG | 1 cut(s) | 71 |
| HphI | GGTGA | 3 cut(s) | 57, 242, 508 |
| Hpy188I | TCNGA | 4 cut(s) | 192, 214, 468, 745 |
| Hpy188III | TCNNGA | 6 cut(s) | 35, 89, 137, 332, 445, 491 |
| Hpy99I | CGWCG | 2 cut(s) | 214, 355 |
| HpyAV | CCTTC | 5 cut(s) | 281, 466, 596, 799, 898 |
| HpyCH4III | ACNGT | 4 cut(s) | 86, 502, 508, 594 |
| HpyCH4IV | ACGT | 2 cut(s) | 26, 825 |
| HpyCH4V | TGCA | 2 cut(s) | 15, 238 |
| HpyF3I | CTNAG | 5 cut(s) | 189, 465, 607, 686, 735 |
| HpySE526I | ACGT | 2 cut(s) | 26, 825 |
| Hsp92I | GRCGYC | 2 cut(s) | 258, 267 |
| Hsp92II | CATG | 4 cut(s) | 62, 148, 448, 641 |
| HspAI | GCGC | 1 cut(s) | 258 |
| KasI | GGCGCC | 1 cut(s) | 257 |
| KpnI | GGTACC | 1 cut(s) | 309 |
| KspI | CCGCGG | 2 cut(s) | 375, 796 |
| Kzo9I | GATC | 5 cut(s) | 184, 339, 441, 566, 880 |
| LguI | GCTCTTC | 1 cut(s) | 650 |
| LmnI | GCTCC | 5 cut(s) | 47, 121, 493, 676, 715 |
| Lsp1109I | GCAGC | 6 cut(s) | 151, 216, 250, 343, 349, 355 |
| LweI | GCATC | 5 cut(s) | 225, 475, 715, 769, 778 |
| MaeI | CTAG | 1 cut(s) | 765 |
| MaeII | ACGT | 2 cut(s) | 26, 825 |
| MaeIII | GTNAC | 3 cut(s) | 376, 496, 502 |
| MalI | GATC | 5 cut(s) | 186, 341, 443, 568, 882 |
| MbiI | CCGCTC | 4 cut(s) | 311, 531, 679, 832 |
| MboI | GATC | 5 cut(s) | 184, 339, 441, 566, 880 |
| MboII | GAAGA | 3 cut(s) | 481, 527, 637 |
| MhlI | GDGCHC | 4 cut(s) | 460, 466, 621, 645 |
| MlsI | TGGCCA | 1 cut(s) | 812 |
| MluNI | TGGCCA | 1 cut(s) | 812 |
| Mly113I | GGCGCC | 1 cut(s) | 258 |
| MmeI | TCCRAC | 3 cut(s) | 192, 516, 540 |
| Mox20I | TGGCCA | 1 cut(s) | 812 |
| MscI | TGGCCA | 1 cut(s) | 812 |
| MseI | TTAA | 2 cut(s) | 126, 699 |
| Msp20I | TGGCCA | 1 cut(s) | 812 |
| MspA1I | CMGCKG | 4 cut(s) | 362, 368, 374, 795 |
| MspI | CCGG | 1 cut(s) | 71 |
| MspR9I | CCNGG | 3 cut(s) | 72, 785, 854 |
| Mva1269I | GAATGC | 1 cut(s) | 779 |
| MvaI | CCWGG | 2 cut(s) | 785, 854 |
| MvnI | CGCG | 2 cut(s) | 374, 795 |
| NarI | GGCGCC | 1 cut(s) | 258 |
| NciI | CCSGG | 1 cut(s) | 72 |
| NdeII | GATC | 5 cut(s) | 184, 339, 441, 566, 880 |
| NlaIII | CATG | 4 cut(s) | 62, 148, 448, 641 |
| NlaIV | GGNNCC | 6 cut(s) | 259, 307, 336, 457, 458, 620 |
| NmeAIII | GCCGAG | 2 cut(s) | 181, 552 |
| NmuCI | GTSAC | 3 cut(s) | 376, 496, 502 |
| NspI | RCATGY | 1 cut(s) | 148 |
| NspV | TTCGAA | 1 cut(s) | 99 |
| PagI | TCATGA | 1 cut(s) | 444 |
| PciSI | GCTCTTC | 1 cut(s) | 650 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 388, 575 |
| PctI | GAATGC | 1 cut(s) | 779 |
| PfeI | GAWTC | 4 cut(s) | 62, 205, 539, 913 |
| Ple19I | CGATCG | 1 cut(s) | 342 |
| PluTI | GGCGCC | 1 cut(s) | 261 |
| Psp124BI | GAGCTC | 1 cut(s) | 645 |
| Psp6I | CCWGG | 2 cut(s) | 783, 852 |
| PspGI | CCWGG | 2 cut(s) | 783, 852 |
| PspN4I | GGNNCC | 6 cut(s) | 259, 307, 336, 457, 458, 620 |
| PspOMI | GGGCCC | 1 cut(s) | 456 |
| PspPI | GGNCC | 6 cut(s) | 20, 277, 290, 456, 457, 571 |
| PvuI | CGATCG | 1 cut(s) | 342 |
| RsaI | GTAC | 2 cut(s) | 149, 307 |
| RsaNI | GTAC | 2 cut(s) | 148, 306 |
| Rsr2I | CGGWCCG | 1 cut(s) | 571 |
| RsrII | CGGWCCG | 1 cut(s) | 571 |
| SacI | GAGCTC | 1 cut(s) | 645 |
| SacII | CCGCGG | 2 cut(s) | 375, 796 |
| SapI | GCTCTTC | 1 cut(s) | 650 |
| SaqAI | TTAA | 2 cut(s) | 126, 699 |
| Sau3AI | GATC | 5 cut(s) | 184, 339, 441, 566, 880 |
| Sau96I | GGNCC | 6 cut(s) | 20, 277, 290, 456, 457, 571 |
| ScrFI | CCNGG | 3 cut(s) | 72, 785, 854 |
| SduI | GDGCHC | 4 cut(s) | 460, 466, 621, 645 |
| SfaNI | GCATC | 5 cut(s) | 225, 475, 715, 769, 778 |
| SfoI | GGCGCC | 1 cut(s) | 259 |
| Sfr303I | CCGCGG | 2 cut(s) | 375, 796 |
| SfuI | TTCGAA | 1 cut(s) | 99 |
| SgrBI | CCGCGG | 2 cut(s) | 375, 796 |
| SinI | GGWCC | 3 cut(s) | 277, 290, 571 |
| SmlI | CTYRAG | 1 cut(s) | 312 |
| SmoI | CTYRAG | 1 cut(s) | 312 |
| SspDI | GGCGCC | 1 cut(s) | 257 |
| SspMI | CTAG | 1 cut(s) | 765 |
| SstI | GAGCTC | 1 cut(s) | 645 |
| StyD4I | CCNGG | 3 cut(s) | 70, 783, 852 |
| StyI | CCWWGG | 3 cut(s) | 253, 709, 729 |
| TaaI | ACNGT | 4 cut(s) | 86, 502, 508, 594 |
| TaiI | ACGT | 2 cut(s) | 29, 828 |
| TaqI | TCGA | 2 cut(s) | 99, 183 |
| TaqII | GACCGA | 2 cut(s) | 307, 559 |
| TfiI | GAWTC | 4 cut(s) | 62, 205, 539, 913 |
| Tru1I | TTAA | 2 cut(s) | 126, 699 |
| Tru9I | TTAA | 2 cut(s) | 126, 699 |
| TscAI | CASTG | 2 cut(s) | 57, 207 |
| TseFI | GTSAC | 3 cut(s) | 376, 496, 502 |
| TseI | GCWGC | 6 cut(s) | 164, 229, 238, 356, 362, 368 |
| Tsp45I | GTSAC | 3 cut(s) | 376, 496, 502 |
| TspGWI | ACGGA | 2 cut(s) | 198, 638 |
| TspRI | CASTG | 2 cut(s) | 57, 207 |
| VpaK11BI | GGWCC | 3 cut(s) | 277, 290, 571 |
| XceI | RCATGY | 1 cut(s) | 148 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 251 |
| XspI | CTAG | 1 cut(s) | 765 |