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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 442, 932 |
| AccBSI | CCGCTC | 2 cut(s) | 502, 688 |
| AccI | GTMKAC | 1 cut(s) | 342 |
| AccII | CGCG | 1 cut(s) | 347 |
| AclWI | GGATC | 2 cut(s) | 329, 763 |
| AcoI | YGGCCR | 1 cut(s) | 939 |
| AcsI | RAATTY | 2 cut(s) | 482, 761 |
| AcyI | GRCGYC | 2 cut(s) | 644, 666 |
| AfaI | GTAC | 1 cut(s) | 49 |
| AfeI | AGCGCT | 2 cut(s) | 192, 276 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 205, 269, 415, 595, 675, 732, 778 |
| AgsI | TTSAA | 2 cut(s) | 414, 776 |
| AjnI | CCWGG | 2 cut(s) | 126, 834 |
| AluBI | AGCT | 3 cut(s) | 532, 709, 814 |
| AluI | AGCT | 3 cut(s) | 532, 709, 814 |
| Alw26I | GTCTC | 5 cut(s) | 319, 362, 706, 869, 911 |
| AlwI | GGATC | 2 cut(s) | 329, 763 |
| Ama87I | CYCGRG | 2 cut(s) | 300, 533 |
| Aor51HI | AGCGCT | 2 cut(s) | 192, 276 |
| AoxI | GGCC | 8 cut(s) | 156, 247, 434, 544, 597, 906, 927, 939 |
| ApeKI | GCWGC | 4 cut(s) | 529, 622, 730, 863 |
| ApoI | RAATTY | 2 cut(s) | 482, 761 |
| AspLEI | GCGC | 4 cut(s) | 193, 277, 564, 971 |
| AspS9I | GGNCC | 5 cut(s) | 157, 208, 248, 379, 434 |
| AsuC2I | CCSGG | 2 cut(s) | 63, 658 |
| AsuHPI | GGTGA | 1 cut(s) | 817 |
| AvaI | CYCGRG | 2 cut(s) | 300, 533 |
| AvaII | GGWCC | 2 cut(s) | 208, 379 |
| BalI | TGGCCA | 1 cut(s) | 941 |
| BanI | GGYRCC | 2 cut(s) | 442, 932 |
| BauI | CACGAG | 1 cut(s) | 80 |
| BbvCI | CCTCAGC | 1 cut(s) | 801 |
| BbvI | GCAGC | 4 cut(s) | 541, 609, 717, 875 |
| BccI | CCATC | 2 cut(s) | 390, 484 |
| BceAI | ACGGC | 3 cut(s) | 557, 653, 936 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 71, 105 |
| BciT130I | CCWGG | 2 cut(s) | 128, 836 |
| BcnI | CCSGG | 2 cut(s) | 63, 658 |
| BcoDI | GTCTC | 5 cut(s) | 319, 362, 706, 869, 911 |
| BfaI | CTAG | 3 cut(s) | 152, 710, 792 |
| BfoI | RGCGCY | 3 cut(s) | 194, 278, 972 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 255 |
| BlpI | GCTNAGC | 1 cut(s) | 194 |
| Bme1390I | CCNGG | 4 cut(s) | 63, 128, 658, 836 |
| Bme18I | GGWCC | 2 cut(s) | 208, 379 |
| BmeT110I | CYCGRG | 2 cut(s) | 300, 533 |
| BmgT120I | GGNCC | 5 cut(s) | 157, 208, 248, 379, 434 |
| BmiI | GGNNCC | 5 cut(s) | 210, 250, 380, 444, 934 |
| BmrFI | CCNGG | 4 cut(s) | 63, 128, 658, 836 |
| BmsI | GCATC | 2 cut(s) | 117, 216 |
| BoxI | GACNNNNGTC | 1 cut(s) | 170 |
| BpmI | CTGGAG | 1 cut(s) | 836 |
| Bpu10I | CCTNAGC | 2 cut(s) | 750, 801 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 194 |
| BpuEI | CTTGAG | 1 cut(s) | 569 |
| BpuMI | CCSGG | 2 cut(s) | 63, 658 |
| BsaHI | GRCGYC | 2 cut(s) | 644, 666 |
| BsaI | GGTCTC | 1 cut(s) | 362 |
| BsaJI | CCNNGG | 6 cut(s) | 244, 313, 656, 835, 870, 936 |
| BsaWI | WCCGGW | 1 cut(s) | 337 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 40, 70 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 205, 269, 415, 595, 675, 732, 778 |
| Bse118I | RCCGGY | 1 cut(s) | 929 |
| Bse1I | ACTGG | 1 cut(s) | 199 |
| BseBI | CCWGG | 2 cut(s) | 128, 836 |
| BseDI | CCNNGG | 6 cut(s) | 244, 313, 656, 835, 870, 936 |
| BseGI | GGATG | 2 cut(s) | 355, 364 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 205, 269, 415, 595, 675, 732, 778 |
| BseMII | CTCAG | 5 cut(s) | 185, 194, 489, 792, 906 |
| BseNI | ACTGG | 1 cut(s) | 199 |
| BseXI | GCAGC | 4 cut(s) | 541, 609, 717, 875 |
| BseYI | CCCAGC | 1 cut(s) | 431 |
| BsgI | GTGCAG | 1 cut(s) | 608 |
| Bsh1236I | CGCG | 1 cut(s) | 347 |
| Bsh1285I | CGRYCG | 2 cut(s) | 171, 342 |
| BshFI | GGCC | 8 cut(s) | 158, 249, 436, 546, 599, 908, 929, 941 |
| BshNI | GGYRCC | 2 cut(s) | 442, 932 |
| BsiEI | CGRYCG | 2 cut(s) | 171, 342 |
| BsiHKCI | CYCGRG | 2 cut(s) | 300, 533 |
| BsiSI | CCGG | 4 cut(s) | 62, 338, 658, 930 |
| BslFI | GGGAC | 3 cut(s) | 194, 571, 692 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 205, 269, 415, 595, 675, 732, 778 |
| BsmAI | GTCTC | 5 cut(s) | 319, 362, 706, 869, 911 |
| BsmBI | CGTCTC | 3 cut(s) | 706, 869, 911 |
| BsmFI | GGGAC | 3 cut(s) | 194, 571, 692 |
| BsnI | GGCC | 8 cut(s) | 158, 249, 436, 546, 599, 908, 929, 941 |
| Bso31I | GGTCTC | 1 cut(s) | 362 |
| BsoBI | CYCGRG | 2 cut(s) | 300, 533 |
| Bsp143I | GATC | 5 cut(s) | 168, 334, 454, 694, 768 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 194 |
| Bsp19I | CCATGG | 1 cut(s) | 936 |
| BspANI | GGCC | 8 cut(s) | 158, 249, 436, 546, 599, 908, 929, 941 |
| BspCNI | CTCAG | 5 cut(s) | 186, 193, 490, 793, 907 |
| BspFNI | CGCG | 1 cut(s) | 347 |
| BspLI | GGNNCC | 5 cut(s) | 210, 250, 380, 444, 934 |
| BspPI | GGATC | 2 cut(s) | 329, 763 |
| BspT107I | GGYRCC | 2 cut(s) | 442, 932 |
| BspTNI | GGTCTC | 1 cut(s) | 362 |
| BsrBI | CCGCTC | 2 cut(s) | 502, 688 |
| BsrFI | RCCGGY | 1 cut(s) | 929 |
| BsrI | ACTGG | 1 cut(s) | 199 |
| BssAI | RCCGGY | 1 cut(s) | 929 |
| BssECI | CCNNGG | 6 cut(s) | 244, 313, 656, 835, 870, 936 |
| BssMI | GATC | 5 cut(s) | 168, 334, 454, 694, 768 |
| BssNI | GRCGYC | 2 cut(s) | 644, 666 |
| BssSI | CACGAG | 1 cut(s) | 80 |
| BssT1I | CCWWGG | 2 cut(s) | 313, 936 |
| Bst2BI | CACGAG | 1 cut(s) | 80 |
| Bst2UI | CCWGG | 2 cut(s) | 128, 836 |
| Bst4CI | ACNGT | 1 cut(s) | 871 |
| Bst6I | CTCTTC | 1 cut(s) | 348 |
| BstACI | GRCGYC | 2 cut(s) | 644, 666 |
| BstC8I | GCNNGC | 4 cut(s) | 76, 260, 527, 832 |
| BstDEI | CTNAG | 7 cut(s) | 180, 194, 204, 498, 750, 801, 915 |
| BstDSI | CCRYGG | 2 cut(s) | 870, 936 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 413 |
| BstF5I | GGATG | 2 cut(s) | 355, 364 |
| BstFNI | CGCG | 1 cut(s) | 347 |
| BstH2I | RGCGCY | 3 cut(s) | 194, 278, 972 |
| BstHHI | GCGC | 4 cut(s) | 193, 277, 564, 971 |
| BstKTI | GATC | 5 cut(s) | 171, 337, 457, 697, 771 |
| BstMAI | GTCTC | 5 cut(s) | 319, 362, 706, 869, 911 |
| BstMBI | GATC | 5 cut(s) | 168, 334, 454, 694, 768 |
| BstMCI | CGRYCG | 2 cut(s) | 171, 342 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 255, 442, 476, 647, 797, 863 |
| BstNI | CCWGG | 2 cut(s) | 128, 836 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 170 |
| BstSCI | CCNGG | 4 cut(s) | 61, 126, 656, 834 |
| BstUI | CGCG | 1 cut(s) | 347 |
| BstV1I | GCAGC | 4 cut(s) | 541, 609, 717, 875 |
| BstX2I | RGATCY | 1 cut(s) | 768 |
| BstYI | RGATCY | 1 cut(s) | 768 |
| BsuRI | GGCC | 8 cut(s) | 158, 249, 436, 546, 599, 908, 929, 941 |
| BtgI | CCRYGG | 2 cut(s) | 870, 936 |
| BtsCI | GGATG | 2 cut(s) | 355, 364 |
| Cac8I | GCNNGC | 4 cut(s) | 76, 260, 527, 832 |
| CfoI | GCGC | 4 cut(s) | 193, 277, 564, 971 |
| Cfr10I | RCCGGY | 1 cut(s) | 929 |
| Cfr13I | GGNCC | 5 cut(s) | 157, 208, 248, 379, 434 |
| CseI | GACGC | 3 cut(s) | 353, 633, 674 |
| Csp6I | GTAC | 1 cut(s) | 48 |
| CviAII | CATG | 2 cut(s) | 136, 937 |
| CviQI | GTAC | 1 cut(s) | 48 |
| DdeI | CTNAG | 7 cut(s) | 180, 194, 204, 498, 750, 801, 915 |
| DpnI | GATC | 5 cut(s) | 170, 336, 456, 696, 770 |
| DpnII | GATC | 5 cut(s) | 168, 334, 454, 694, 768 |
| DraI | TTTAAA | 1 cut(s) | 883 |
| EaeI | YGGCCR | 1 cut(s) | 939 |
| Eam1104I | CTCTTC | 1 cut(s) | 348 |
| EarI | CTCTTC | 1 cut(s) | 348 |
| Eco130I | CCWWGG | 2 cut(s) | 313, 936 |
| Eco31I | GGTCTC | 1 cut(s) | 362 |
| Eco47I | GGWCC | 2 cut(s) | 208, 379 |
| Eco47III | AGCGCT | 2 cut(s) | 192, 276 |
| Eco88I | CYCGRG | 2 cut(s) | 300, 533 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 413 |
| EcoO109I | RGGNCCY | 1 cut(s) | 208 |
| EcoRII | CCWGG | 2 cut(s) | 126, 834 |
| EcoT14I | CCWWGG | 2 cut(s) | 313, 936 |
| ErhI | CCWWGG | 2 cut(s) | 313, 936 |
| Esp3I | CGTCTC | 3 cut(s) | 706, 869, 911 |
| FaeI | CATG | 2 cut(s) | 139, 940 |
| FaqI | GGGAC | 3 cut(s) | 194, 571, 692 |
| FatI | CATG | 2 cut(s) | 135, 936 |
| FauI | CCCGC | 2 cut(s) | 495, 726 |
| FauNDI | CATATG | 1 cut(s) | 475 |
| FblI | GTMKAC | 1 cut(s) | 342 |
| FokI | GGATG | 2 cut(s) | 362, 371 |
| FspBI | CTAG | 3 cut(s) | 152, 710, 792 |
| GlaI | GCGC | 4 cut(s) | 192, 276, 563, 970 |
| GsaI | CCCAGC | 1 cut(s) | 435 |
| GsuI | CTGGAG | 1 cut(s) | 836 |
| HaeII | RGCGCY | 3 cut(s) | 194, 278, 972 |
| HaeIII | GGCC | 8 cut(s) | 158, 249, 436, 546, 599, 908, 929, 941 |
| HapII | CCGG | 4 cut(s) | 62, 338, 658, 930 |
| HgaI | GACGC | 3 cut(s) | 353, 633, 674 |
| HhaI | GCGC | 4 cut(s) | 193, 277, 564, 971 |
| Hin1I | GRCGYC | 2 cut(s) | 644, 666 |
| Hin1II | CATG | 2 cut(s) | 139, 940 |
| Hin6I | GCGC | 4 cut(s) | 191, 275, 562, 969 |
| HinP1I | GCGC | 4 cut(s) | 191, 275, 562, 969 |
| HincII | GTYRAC | 3 cut(s) | 175, 343, 577 |
| HindII | GTYRAC | 3 cut(s) | 175, 343, 577 |
| HinfI | GANTC | 4 cut(s) | 53, 298, 461, 494 |
| HpaI | GTTAAC | 1 cut(s) | 577 |
| HpaII | CCGG | 4 cut(s) | 62, 338, 658, 930 |
| HphI | GGTGA | 1 cut(s) | 817 |
| Hpy166II | GTNNAC | 3 cut(s) | 175, 343, 577 |
| Hpy188I | TCNGA | 2 cut(s) | 183, 499 |
| Hpy188III | TCNNGA | 2 cut(s) | 112, 458 |
| Hpy8I | GTNNAC | 3 cut(s) | 175, 343, 577 |
| Hpy99I | CGWCG | 3 cut(s) | 287, 347, 451 |
| HpyAV | CCTTC | 5 cut(s) | 388, 782, 898, 919, 958 |
| HpyCH4III | ACNGT | 1 cut(s) | 871 |
| HpyCH4IV | ACGT | 1 cut(s) | 878 |
| HpyCH4V | TGCA | 1 cut(s) | 625 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 255, 442, 476, 647, 797, 863 |
| HpyF3I | CTNAG | 7 cut(s) | 180, 194, 204, 498, 750, 801, 915 |
| HpySE526I | ACGT | 1 cut(s) | 878 |
| Hsp92I | GRCGYC | 2 cut(s) | 644, 666 |
| Hsp92II | CATG | 2 cut(s) | 139, 940 |
| HspAI | GCGC | 4 cut(s) | 191, 275, 562, 969 |
| KspAI | GTTAAC | 1 cut(s) | 577 |
| Kzo9I | GATC | 5 cut(s) | 168, 334, 454, 694, 768 |
| LmnI | GCTCC | 3 cut(s) | 272, 282, 685 |
| Lsp1109I | GCAGC | 4 cut(s) | 541, 609, 717, 875 |
| LweI | GCATC | 2 cut(s) | 117, 216 |
| MaeI | CTAG | 3 cut(s) | 152, 710, 792 |
| MaeII | ACGT | 1 cut(s) | 878 |
| MaeIII | GTNAC | 2 cut(s) | 265, 295 |
| MalI | GATC | 5 cut(s) | 170, 336, 456, 696, 770 |
| MbiI | CCGCTC | 2 cut(s) | 502, 688 |
| MboI | GATC | 5 cut(s) | 168, 334, 454, 694, 768 |
| MboII | GAAGA | 4 cut(s) | 365, 403, 505, 820 |
| MfeI | CAATTG | 1 cut(s) | 976 |
| MflI | RGATCY | 1 cut(s) | 768 |
| MlsI | TGGCCA | 1 cut(s) | 941 |
| MluCI | AATT | 5 cut(s) | 121, 482, 629, 761, 976 |
| MluNI | TGGCCA | 1 cut(s) | 941 |
| MlyI | GAGTC | 3 cut(s) | 292, 455, 503 |
| Mox20I | TGGCCA | 1 cut(s) | 941 |
| MscI | TGGCCA | 1 cut(s) | 941 |
| MseI | TTAA | 2 cut(s) | 576, 882 |
| Msp20I | TGGCCA | 1 cut(s) | 941 |
| MspA1I | CMGCKG | 3 cut(s) | 290, 388, 431 |
| MspI | CCGG | 4 cut(s) | 62, 338, 658, 930 |
| MspR9I | CCNGG | 4 cut(s) | 63, 128, 658, 836 |
| MssI | GTTTAAAC | 1 cut(s) | 883 |
| MunI | CAATTG | 1 cut(s) | 976 |
| MvaI | CCWGG | 2 cut(s) | 128, 836 |
| MvnI | CGCG | 1 cut(s) | 347 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 255, 442, 476, 647, 797, 863 |
| NciI | CCSGG | 2 cut(s) | 63, 658 |
| NcoI | CCATGG | 1 cut(s) | 936 |
| NdeI | CATATG | 1 cut(s) | 475 |
| NdeII | GATC | 5 cut(s) | 168, 334, 454, 694, 768 |
| NlaIII | CATG | 2 cut(s) | 139, 940 |
| NlaIV | GGNNCC | 5 cut(s) | 210, 250, 380, 444, 934 |
| NmeAIII | GCCGAG | 2 cut(s) | 225, 575 |
| NmuCI | GTSAC | 2 cut(s) | 265, 295 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PfeI | GAWTC | 1 cut(s) | 53 |
| PfoI | TCCNGGA | 1 cut(s) | 126 |
| Ple19I | CGATCG | 1 cut(s) | 171 |
| PleI | GAGTC | 3 cut(s) | 292, 455, 502 |
| PmeI | GTTTAAAC | 1 cut(s) | 883 |
| PpsI | GAGTC | 3 cut(s) | 292, 455, 502 |
| PpuMI | RGGWCCY | 1 cut(s) | 208 |
| PshAI | GACNNNNGTC | 1 cut(s) | 170 |
| Psp5II | RGGWCCY | 1 cut(s) | 208 |
| Psp6I | CCWGG | 2 cut(s) | 126, 834 |
| PspFI | CCCAGC | 1 cut(s) | 431 |
| PspGI | CCWGG | 2 cut(s) | 126, 834 |
| PspN4I | GGNNCC | 5 cut(s) | 210, 250, 380, 444, 934 |
| PspPI | GGNCC | 5 cut(s) | 157, 208, 248, 379, 434 |
| PspPPI | RGGWCCY | 1 cut(s) | 208 |
| PsuI | RGATCY | 1 cut(s) | 768 |
| PvuI | CGATCG | 1 cut(s) | 171 |
| RsaI | GTAC | 1 cut(s) | 49 |
| RsaNI | GTAC | 1 cut(s) | 48 |
| SalI | GTCGAC | 1 cut(s) | 341 |
| SaqAI | TTAA | 2 cut(s) | 576, 882 |
| Sau3AI | GATC | 5 cut(s) | 168, 334, 454, 694, 768 |
| Sau96I | GGNCC | 5 cut(s) | 157, 208, 248, 379, 434 |
| SchI | GAGTC | 3 cut(s) | 292, 455, 503 |
| ScrFI | CCNGG | 4 cut(s) | 63, 128, 658, 836 |
| SfaNI | GCATC | 2 cut(s) | 117, 216 |
| SinI | GGWCC | 2 cut(s) | 208, 379 |
| SmlI | CTYRAG | 1 cut(s) | 548 |
| SmoI | CTYRAG | 1 cut(s) | 548 |
| Sse9I | AATT | 5 cut(s) | 121, 482, 629, 761, 976 |
| SspMI | CTAG | 3 cut(s) | 152, 710, 792 |
| StyD4I | CCNGG | 4 cut(s) | 61, 126, 656, 834 |
| StyI | CCWWGG | 2 cut(s) | 313, 936 |
| TaaI | ACNGT | 1 cut(s) | 871 |
| TaiI | ACGT | 1 cut(s) | 881 |
| TaqI | TCGA | 3 cut(s) | 111, 224, 342 |
| TasI | AATT | 5 cut(s) | 121, 482, 629, 761, 976 |
| TauI | GCSGC | 6 cut(s) | 232, 290, 473, 546, 644, 791 |
| TfiI | GAWTC | 1 cut(s) | 53 |
| Tru1I | TTAA | 2 cut(s) | 576, 882 |
| Tru9I | TTAA | 2 cut(s) | 576, 882 |
| TseFI | GTSAC | 2 cut(s) | 265, 295 |
| TseI | GCWGC | 4 cut(s) | 529, 622, 730, 863 |
| Tsp45I | GTSAC | 2 cut(s) | 265, 295 |
| TspDTI | ATGAA | 1 cut(s) | 366 |
| TspGWI | ACGGA | 1 cut(s) | 178 |
| VpaK11BI | GGWCC | 2 cut(s) | 208, 379 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 413 |
| XapI | RAATTY | 2 cut(s) | 482, 761 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XmiI | GTMKAC | 1 cut(s) | 342 |
| XspI | CTAG | 3 cut(s) | 152, 710, 792 |