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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 3 cut(s) | 244, 261, 273 |
| AccII | CGCG | 2 cut(s) | 387, 449 |
| AclWI | GGATC | 1 cut(s) | 329 |
| AcoI | YGGCCR | 2 cut(s) | 228, 393 |
| AcuI | CTGAAG | 1 cut(s) | 10 |
| AcyI | GRCGYC | 2 cut(s) | 80, 213 |
| AfaI | GTAC | 2 cut(s) | 413, 475 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 136, 159, 243, 260, 317, 318, 391, 499 |
| AflIII | ACRYGT | 1 cut(s) | 305 |
| AgsI | TTSAA | 1 cut(s) | 506 |
| AjiI | CACGTC | 1 cut(s) | 46 |
| AjnI | CCWGG | 3 cut(s) | 72, 153, 493 |
| AluBI | AGCT | 3 cut(s) | 109, 346, 458 |
| AluI | AGCT | 3 cut(s) | 109, 346, 458 |
| Alw21I | GWGCWC | 1 cut(s) | 111 |
| AlwI | GGATC | 1 cut(s) | 329 |
| AoxI | GGCC | 6 cut(s) | 127, 150, 192, 228, 393, 444 |
| ApeKI | GCWGC | 3 cut(s) | 58, 315, 389 |
| AspLEI | GCGC | 2 cut(s) | 389, 481 |
| AspS9I | GGNCC | 2 cut(s) | 127, 151 |
| AsuHPI | GGTGA | 1 cut(s) | 365 |
| BaeGI | GKGCMC | 1 cut(s) | 45 |
| BanII | GRGCYC | 1 cut(s) | 111 |
| Bbv12I | GWGCWC | 1 cut(s) | 111 |
| BbvCI | CCTCAGC | 1 cut(s) | 333 |
| BbvI | GCAGC | 3 cut(s) | 45, 302, 376 |
| BceAI | ACGGC | 3 cut(s) | 35, 48, 215 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 185, 219 |
| BciT130I | CCWGG | 3 cut(s) | 74, 155, 495 |
| BmcAI | AGTACT | 1 cut(s) | 475 |
| Bme1390I | CCNGG | 3 cut(s) | 74, 155, 495 |
| BmgBI | CACGTC | 1 cut(s) | 46 |
| BmgT120I | GGNCC | 2 cut(s) | 127, 151 |
| BmiI | GGNNCC | 1 cut(s) | 383 |
| BmrFI | CCNGG | 3 cut(s) | 74, 155, 495 |
| BmsI | GCATC | 1 cut(s) | 193 |
| BpmI | CTGGAG | 1 cut(s) | 368 |
| Bpu10I | CCTNAGC | 2 cut(s) | 110, 333 |
| BsaHI | GRCGYC | 2 cut(s) | 80, 213 |
| BsaJI | CCNNGG | 4 cut(s) | 153, 217, 402, 493 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 136, 159, 243, 260, 317, 318, 391, 499 |
| BseBI | CCWGG | 3 cut(s) | 74, 155, 495 |
| BseDI | CCNNGG | 4 cut(s) | 153, 217, 402, 493 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 136, 159, 243, 260, 317, 318, 391, 499 |
| BseMII | CTCAG | 3 cut(s) | 124, 324, 359 |
| BseRI | GAGGAG | 1 cut(s) | 131 |
| BseSI | GKGCMC | 1 cut(s) | 45 |
| BseX3I | CGGCCG | 1 cut(s) | 393 |
| BseXI | GCAGC | 3 cut(s) | 45, 302, 376 |
| Bsh1236I | CGCG | 2 cut(s) | 387, 449 |
| Bsh1285I | CGRYCG | 1 cut(s) | 396 |
| BshFI | GGCC | 6 cut(s) | 129, 152, 194, 230, 395, 446 |
| BsiEI | CGRYCG | 1 cut(s) | 396 |
| BsiHKAI | GWGCWC | 1 cut(s) | 111 |
| BslFI | GGGAC | 2 cut(s) | 152, 294 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 136, 159, 243, 260, 317, 318, 391, 499 |
| BsmFI | GGGAC | 2 cut(s) | 152, 294 |
| BsnI | GGCC | 6 cut(s) | 129, 152, 194, 230, 395, 446 |
| Bsp1286I | GDGCHC | 2 cut(s) | 45, 111 |
| Bsp143I | GATC | 1 cut(s) | 321 |
| BspANI | GGCC | 6 cut(s) | 129, 152, 194, 230, 395, 446 |
| BspCNI | CTCAG | 3 cut(s) | 123, 325, 360 |
| BspFNI | CGCG | 2 cut(s) | 387, 449 |
| BspLI | GGNNCC | 1 cut(s) | 383 |
| BspPI | GGATC | 1 cut(s) | 329 |
| BsrBI | CCGCTC | 3 cut(s) | 244, 261, 273 |
| BssECI | CCNNGG | 4 cut(s) | 153, 217, 402, 493 |
| BssMI | GATC | 1 cut(s) | 321 |
| BssNI | GRCGYC | 2 cut(s) | 80, 213 |
| BssT1I | CCWWGG | 1 cut(s) | 402 |
| Bst2UI | CCWGG | 3 cut(s) | 74, 155, 495 |
| Bst4CI | ACNGT | 1 cut(s) | 200 |
| BstACI | GRCGYC | 2 cut(s) | 80, 213 |
| BstC8I | GCNNGC | 3 cut(s) | 127, 364, 483 |
| BstDEI | CTNAG | 3 cut(s) | 110, 333, 368 |
| BstDSI | CCRYGG | 1 cut(s) | 217 |
| BstFNI | CGCG | 2 cut(s) | 387, 449 |
| BstHHI | GCGC | 2 cut(s) | 389, 481 |
| BstKTI | GATC | 1 cut(s) | 324 |
| BstMBI | GATC | 1 cut(s) | 321 |
| BstMCI | CGRYCG | 1 cut(s) | 396 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 212, 250, 395, 398, 443, 446, 455 |
| BstNI | CCWGG | 3 cut(s) | 74, 155, 495 |
| BstNSI | RCATGY | 1 cut(s) | 309 |
| BstSCI | CCNGG | 3 cut(s) | 72, 153, 493 |
| BstSLI | GKGCMC | 1 cut(s) | 45 |
| BstUI | CGCG | 2 cut(s) | 387, 449 |
| BstV1I | GCAGC | 3 cut(s) | 45, 302, 376 |
| BstZI | CGGCCG | 1 cut(s) | 393 |
| BsuRI | GGCC | 6 cut(s) | 129, 152, 194, 230, 395, 446 |
| BtgI | CCRYGG | 1 cut(s) | 217 |
| BtrI | CACGTC | 1 cut(s) | 46 |
| BtsIMutI | CAGTG | 1 cut(s) | 425 |
| Cac8I | GCNNGC | 3 cut(s) | 127, 364, 483 |
| CciNI | GCGGCCGC | 1 cut(s) | 393 |
| CfoI | GCGC | 2 cut(s) | 389, 481 |
| Cfr13I | GGNCC | 2 cut(s) | 127, 151 |
| CseI | GACGC | 3 cut(s) | 69, 189, 221 |
| Csp6I | GTAC | 2 cut(s) | 412, 474 |
| CviAII | CATG | 2 cut(s) | 62, 306 |
| CviQI | GTAC | 2 cut(s) | 412, 474 |
| DdeI | CTNAG | 3 cut(s) | 110, 333, 368 |
| DpnI | GATC | 1 cut(s) | 323 |
| DpnII | GATC | 1 cut(s) | 321 |
| EaeI | YGGCCR | 2 cut(s) | 228, 393 |
| EagI | CGGCCG | 1 cut(s) | 393 |
| EciI | GGCGGA | 1 cut(s) | 450 |
| Ecl136II | GAGCTC | 1 cut(s) | 109 |
| EclXI | CGGCCG | 1 cut(s) | 393 |
| Eco130I | CCWWGG | 1 cut(s) | 402 |
| Eco24I | GRGCYC | 1 cut(s) | 111 |
| Eco52I | CGGCCG | 1 cut(s) | 393 |
| Eco53kI | GAGCTC | 1 cut(s) | 109 |
| Eco57I | CTGAAG | 1 cut(s) | 10 |
| EcoICRI | GAGCTC | 1 cut(s) | 109 |
| EcoRII | CCWGG | 3 cut(s) | 72, 153, 493 |
| EcoT14I | CCWWGG | 1 cut(s) | 402 |
| EcoT38I | GRGCYC | 1 cut(s) | 111 |
| ErhI | CCWWGG | 1 cut(s) | 402 |
| FaeI | CATG | 2 cut(s) | 65, 309 |
| FaiI | YATR | 2 cut(s) | 63, 307 |
| FaqI | GGGAC | 2 cut(s) | 152, 294 |
| FatI | CATG | 2 cut(s) | 61, 305 |
| FauI | CCCGC | 5 cut(s) | 118, 237, 254, 311, 371 |
| FriOI | GRGCYC | 1 cut(s) | 111 |
| GlaI | GCGC | 2 cut(s) | 388, 480 |
| GsuI | CTGGAG | 1 cut(s) | 368 |
| HaeIII | GGCC | 6 cut(s) | 129, 152, 194, 230, 395, 446 |
| HgaI | GACGC | 3 cut(s) | 69, 189, 221 |
| HhaI | GCGC | 2 cut(s) | 389, 481 |
| Hin1I | GRCGYC | 2 cut(s) | 80, 213 |
| Hin1II | CATG | 2 cut(s) | 65, 309 |
| Hin6I | GCGC | 2 cut(s) | 387, 479 |
| HinP1I | GCGC | 2 cut(s) | 387, 479 |
| HincII | GTYRAC | 1 cut(s) | 13 |
| HindII | GTYRAC | 1 cut(s) | 13 |
| HinfI | GANTC | 1 cut(s) | 407 |
| HpaI | GTTAAC | 1 cut(s) | 13 |
| HphI | GGTGA | 1 cut(s) | 365 |
| Hpy166II | GTNNAC | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 1 cut(s) | 326 |
| Hpy8I | GTNNAC | 1 cut(s) | 13 |
| Hpy99I | CGWCG | 2 cut(s) | 50, 183 |
| HpyAV | CCTTC | 3 cut(s) | 34, 436, 445 |
| HpyCH4III | ACNGT | 1 cut(s) | 200 |
| HpyCH4IV | ACGT | 1 cut(s) | 45 |
| HpyCH4V | TGCA | 1 cut(s) | 61 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 212, 250, 395, 398, 443, 446, 455 |
| HpyF3I | CTNAG | 3 cut(s) | 110, 333, 368 |
| HpySE526I | ACGT | 1 cut(s) | 45 |
| Hsp92I | GRCGYC | 2 cut(s) | 80, 213 |
| Hsp92II | CATG | 2 cut(s) | 65, 309 |
| HspAI | GCGC | 2 cut(s) | 387, 479 |
| KspAI | GTTAAC | 1 cut(s) | 13 |
| Kzo9I | GATC | 1 cut(s) | 321 |
| LmnI | GCTCC | 5 cut(s) | 106, 270, 297, 381, 463 |
| Lsp1109I | GCAGC | 3 cut(s) | 45, 302, 376 |
| LweI | GCATC | 1 cut(s) | 193 |
| MaeII | ACGT | 1 cut(s) | 45 |
| MalI | GATC | 1 cut(s) | 323 |
| MbiI | CCGCTC | 3 cut(s) | 244, 261, 273 |
| MboI | GATC | 1 cut(s) | 321 |
| MhlI | GDGCHC | 2 cut(s) | 45, 111 |
| MluCI | AATT | 1 cut(s) | 283 |
| MlyI | GAGTC | 1 cut(s) | 416 |
| MmeI | TCCRAC | 1 cut(s) | 275 |
| MnlI | CCTC | 7 cut(s) | 96, 109, 112, 142, 328, 343, 370 |
| MseI | TTAA | 2 cut(s) | 12, 339 |
| MspA1I | CMGCKG | 1 cut(s) | 346 |
| MspR9I | CCNGG | 3 cut(s) | 74, 155, 495 |
| MvaI | CCWGG | 3 cut(s) | 74, 155, 495 |
| MvnI | CGCG | 2 cut(s) | 387, 449 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 212, 250, 395, 398, 443, 446, 455 |
| NdeII | GATC | 1 cut(s) | 321 |
| NlaIII | CATG | 2 cut(s) | 65, 309 |
| NlaIV | GGNNCC | 1 cut(s) | 383 |
| NotI | GCGGCCGC | 1 cut(s) | 393 |
| NspI | RCATGY | 1 cut(s) | 309 |
| PciI | ACATGT | 1 cut(s) | 305 |
| PleI | GAGTC | 1 cut(s) | 415 |
| PpsI | GAGTC | 1 cut(s) | 415 |
| PscI | ACATGT | 1 cut(s) | 305 |
| Psp124BI | GAGCTC | 1 cut(s) | 111 |
| Psp6I | CCWGG | 3 cut(s) | 72, 153, 493 |
| PspGI | CCWGG | 3 cut(s) | 72, 153, 493 |
| PspN4I | GGNNCC | 1 cut(s) | 383 |
| PspPI | GGNCC | 2 cut(s) | 127, 151 |
| PvuII | CAGCTG | 1 cut(s) | 346 |
| RsaI | GTAC | 2 cut(s) | 413, 475 |
| RsaNI | GTAC | 2 cut(s) | 412, 474 |
| SacI | GAGCTC | 1 cut(s) | 111 |
| SaqAI | TTAA | 2 cut(s) | 12, 339 |
| Sau3AI | GATC | 1 cut(s) | 321 |
| Sau96I | GGNCC | 2 cut(s) | 127, 151 |
| ScaI | AGTACT | 1 cut(s) | 475 |
| SchI | GAGTC | 1 cut(s) | 416 |
| ScrFI | CCNGG | 3 cut(s) | 74, 155, 495 |
| SduI | GDGCHC | 2 cut(s) | 45, 111 |
| SetI | ASST | 8 cut(s) | 48, 111, 123, 164, 339, 348, 460, 504 |
| SfaNI | GCATC | 1 cut(s) | 193 |
| Sse9I | AATT | 1 cut(s) | 283 |
| SstI | GAGCTC | 1 cut(s) | 111 |
| StyD4I | CCNGG | 3 cut(s) | 72, 153, 493 |
| StyI | CCWWGG | 1 cut(s) | 402 |
| TaaI | ACNGT | 1 cut(s) | 200 |
| TaiI | ACGT | 1 cut(s) | 48 |
| TaqI | TCGA | 1 cut(s) | 174 |
| TaqII | GACCGA | 1 cut(s) | 446 |
| TasI | AATT | 1 cut(s) | 283 |
| TatI | WGTACW | 1 cut(s) | 473 |
| TauI | GCSGC | 8 cut(s) | 80, 209, 387, 395, 398, 401, 440, 449 |
| Tru1I | TTAA | 2 cut(s) | 12, 339 |
| Tru9I | TTAA | 2 cut(s) | 12, 339 |
| TscAI | CASTG | 1 cut(s) | 432 |
| TseI | GCWGC | 3 cut(s) | 58, 315, 389 |
| TspRI | CASTG | 1 cut(s) | 432 |
| XceI | RCATGY | 1 cut(s) | 309 |
| ZrmI | AGTACT | 1 cut(s) | 475 |