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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 129 |
| AarI | CACCTGC | 1 cut(s) | 628 |
| AbsI | CCTCGAGG | 1 cut(s) | 646 |
| Acc36I | ACCTGC | 1 cut(s) | 628 |
| AccB1I | GGYRCC | 2 cut(s) | 665, 1113 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 42 |
| AccBSI | CCGCTC | 6 cut(s) | 116, 315, 822, 898, 1036, 1111 |
| AccI | GTMKAC | 2 cut(s) | 77, 459 |
| AccII | CGCG | 4 cut(s) | 141, 156, 250, 1152 |
| AclWI | GGATC | 2 cut(s) | 377, 1048 |
| AcsI | RAATTY | 1 cut(s) | 851 |
| AcvI | CACGTG | 1 cut(s) | 843 |
| AcyI | GRCGYC | 2 cut(s) | 74, 1114 |
| AfaI | GTAC | 3 cut(s) | 347, 440, 525 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 14, 42, 541, 756, 871, 1027, 1123 |
| AflIII | ACRYGT | 1 cut(s) | 842 |
| AgeI | ACCGGT | 2 cut(s) | 215, 397 |
| AgsI | TTSAA | 3 cut(s) | 683, 851, 947 |
| AjnI | CCWGG | 1 cut(s) | 509 |
| AleI | CACNNNNGTG | 1 cut(s) | 891 |
| AluBI | AGCT | 5 cut(s) | 691, 963, 1042, 1159, 1209 |
| AluI | AGCT | 5 cut(s) | 691, 963, 1042, 1159, 1209 |
| Alw26I | GTCTC | 7 cut(s) | 9, 407, 720, 917, 1067, 1173, 1206 |
| AlwI | GGATC | 2 cut(s) | 377, 1048 |
| Ama87I | CYCGRG | 5 cut(s) | 536, 646, 866, 1026, 1183 |
| AoxI | GGCC | 5 cut(s) | 575, 650, 747, 774, 1083 |
| ApaI | GGGCCC | 1 cut(s) | 579 |
| ApeKI | GCWGC | 6 cut(s) | 506, 530, 659, 691, 991, 1039 |
| ApoI | RAATTY | 1 cut(s) | 851 |
| AseI | ATTAAT | 1 cut(s) | 324 |
| AsiGI | ACCGGT | 2 cut(s) | 215, 397 |
| AspLEI | GCGC | 3 cut(s) | 252, 494, 1116 |
| AspS9I | GGNCC | 5 cut(s) | 18, 310, 575, 576, 747 |
| AsuC2I | CCSGG | 1 cut(s) | 270 |
| AsuHPI | GGTGA | 8 cut(s) | 205, 373, 412, 556, 652, 799, 945, 1000 |
| AvaI | CYCGRG | 5 cut(s) | 536, 646, 866, 1026, 1183 |
| AvaII | GGWCC | 2 cut(s) | 18, 310 |
| BaeGI | GKGCMC | 1 cut(s) | 579 |
| BanI | GGYRCC | 2 cut(s) | 665, 1113 |
| BanII | GRGCYC | 1 cut(s) | 579 |
| BauI | CACGAG | 1 cut(s) | 995 |
| BbrPI | CACGTG | 1 cut(s) | 843 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| BbvCI | CCTCAGC | 1 cut(s) | 1043 |
| BbvI | GCAGC | 6 cut(s) | 493, 542, 646, 678, 978, 1051 |
| BccI | CCATC | 1 cut(s) | 670 |
| BciT130I | CCWGG | 1 cut(s) | 511 |
| BcnI | CCSGG | 1 cut(s) | 270 |
| BcoDI | GTCTC | 7 cut(s) | 9, 407, 720, 917, 1067, 1173, 1206 |
| BfaI | CTAG | 4 cut(s) | 483, 827, 902, 1210 |
| BfoI | RGCGCY | 1 cut(s) | 1117 |
| BfuAI | ACCTGC | 1 cut(s) | 628 |
| Bme1390I | CCNGG | 2 cut(s) | 270, 511 |
| Bme18I | GGWCC | 2 cut(s) | 18, 310 |
| BmeT110I | CYCGRG | 5 cut(s) | 536, 646, 866, 1026, 1183 |
| BmgT120I | GGNCC | 5 cut(s) | 18, 310, 575, 576, 747 |
| BmiI | GGNNCC | 8 cut(s) | 19, 577, 578, 609, 633, 667, 748, 1115 |
| BmrFI | CCNGG | 2 cut(s) | 270, 511 |
| BmsI | GCATC | 2 cut(s) | 423, 1135 |
| BoxI | GACNNNNGTC | 2 cut(s) | 204, 979 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1166, 1198 |
| BpmI | CTGGAG | 2 cut(s) | 402, 1049 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1043 |
| BpuMI | CCSGG | 1 cut(s) | 270 |
| BsaAI | YACGTR | 1 cut(s) | 843 |
| BsaHI | GRCGYC | 2 cut(s) | 74, 1114 |
| BsaI | GGTCTC | 2 cut(s) | 917, 1067 |
| BsaJI | CCNNGG | 8 cut(s) | 8, 36, 306, 471, 510, 1025, 1057, 1122 |
| BsaWI | WCCGGW | 2 cut(s) | 215, 397 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 329, 359, 1186 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 14, 42, 541, 756, 871, 1027, 1123 |
| Bse118I | RCCGGY | 3 cut(s) | 215, 397, 662 |
| Bse1I | ACTGG | 3 cut(s) | 406, 419, 493 |
| BseBI | CCWGG | 1 cut(s) | 511 |
| BseDI | CCNNGG | 8 cut(s) | 8, 36, 306, 471, 510, 1025, 1057, 1122 |
| BseGI | GGATG | 3 cut(s) | 925, 1108, 1150 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 14, 42, 541, 756, 871, 1027, 1123 |
| BseMII | CTCAG | 4 cut(s) | 330, 380, 466, 1034 |
| BseNI | ACTGG | 3 cut(s) | 406, 419, 493 |
| BseRI | GAGGAG | 3 cut(s) | 734, 821, 1064 |
| BseSI | GKGCMC | 1 cut(s) | 579 |
| BseXI | GCAGC | 6 cut(s) | 493, 542, 646, 678, 978, 1051 |
| BseYI | CCCAGC | 2 cut(s) | 353, 1075 |
| BsgI | GTGCAG | 1 cut(s) | 977 |
| Bsh1236I | CGCG | 4 cut(s) | 141, 156, 250, 1152 |
| BshFI | GGCC | 5 cut(s) | 577, 652, 749, 776, 1085 |
| BshNI | GGYRCC | 2 cut(s) | 665, 1113 |
| BshTI | ACCGGT | 2 cut(s) | 215, 397 |
| BsiHKCI | CYCGRG | 5 cut(s) | 536, 646, 866, 1026, 1183 |
| BsiSI | CCGG | 4 cut(s) | 216, 269, 398, 663 |
| BslFI | GGGAC | 1 cut(s) | 31 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 14, 42, 541, 756, 871, 1027, 1123 |
| BsmAI | GTCTC | 7 cut(s) | 9, 407, 720, 917, 1067, 1173, 1206 |
| BsmBI | CGTCTC | 1 cut(s) | 720 |
| BsmFI | GGGAC | 1 cut(s) | 31 |
| BsnI | GGCC | 5 cut(s) | 577, 652, 749, 776, 1085 |
| Bso31I | GGTCTC | 2 cut(s) | 917, 1067 |
| BsoBI | CYCGRG | 5 cut(s) | 536, 646, 866, 1026, 1183 |
| Bsp120I | GGGCCC | 1 cut(s) | 575 |
| Bsp1286I | GDGCHC | 1 cut(s) | 579 |
| Bsp143I | GATC | 4 cut(s) | 235, 382, 738, 1053 |
| Bsp19I | CCATGG | 2 cut(s) | 306, 471 |
| Bsp68I | TCGCGA | 1 cut(s) | 1152 |
| BspANI | GGCC | 5 cut(s) | 577, 652, 749, 776, 1085 |
| BspCNI | CTCAG | 4 cut(s) | 329, 379, 465, 1035 |
| BspFNI | CGCG | 4 cut(s) | 141, 156, 250, 1152 |
| BspLI | GGNNCC | 8 cut(s) | 19, 577, 578, 609, 633, 667, 748, 1115 |
| BspMI | ACCTGC | 1 cut(s) | 628 |
| BspPI | GGATC | 2 cut(s) | 377, 1048 |
| BspT107I | GGYRCC | 2 cut(s) | 665, 1113 |
| BspTNI | GGTCTC | 2 cut(s) | 917, 1067 |
| BsrBI | CCGCTC | 6 cut(s) | 116, 315, 822, 898, 1036, 1111 |
| BsrFI | RCCGGY | 3 cut(s) | 215, 397, 662 |
| BsrI | ACTGG | 3 cut(s) | 406, 419, 493 |
| BssAI | RCCGGY | 3 cut(s) | 215, 397, 662 |
| BssECI | CCNNGG | 8 cut(s) | 8, 36, 306, 471, 510, 1025, 1057, 1122 |
| BssMI | GATC | 4 cut(s) | 235, 382, 738, 1053 |
| BssNI | GRCGYC | 2 cut(s) | 74, 1114 |
| BssSI | CACGAG | 1 cut(s) | 995 |
| BssT1I | CCWWGG | 5 cut(s) | 8, 306, 471, 1057, 1122 |
| Bst2BI | CACGAG | 1 cut(s) | 995 |
| Bst2UI | CCWGG | 1 cut(s) | 511 |
| Bst6I | CTCTTC | 3 cut(s) | 141, 711, 755 |
| BstACI | GRCGYC | 2 cut(s) | 74, 1114 |
| BstBAI | YACGTR | 1 cut(s) | 843 |
| BstC8I | GCNNGC | 7 cut(s) | 118, 122, 283, 561, 751, 755, 1150 |
| BstDEI | CTNAG | 4 cut(s) | 316, 366, 452, 1043 |
| BstDSI | CCRYGG | 3 cut(s) | 36, 306, 471 |
| BstEII | GGTNACC | 1 cut(s) | 640 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1121 |
| BstF5I | GGATG | 3 cut(s) | 925, 1108, 1150 |
| BstFNI | CGCG | 4 cut(s) | 141, 156, 250, 1152 |
| BstH2I | RGCGCY | 1 cut(s) | 1117 |
| BstHHI | GCGC | 3 cut(s) | 252, 494, 1116 |
| BstKTI | GATC | 4 cut(s) | 238, 385, 741, 1056 |
| BstMAI | GTCTC | 7 cut(s) | 9, 407, 720, 917, 1067, 1173, 1206 |
| BstMBI | GATC | 4 cut(s) | 235, 382, 738, 1053 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 433, 498, 665, 1145 |
| BstNI | CCWGG | 1 cut(s) | 511 |
| BstNSI | RCATGY | 1 cut(s) | 346 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 204, 979 |
| BstPI | GGTNACC | 1 cut(s) | 640 |
| BstSCI | CCNGG | 2 cut(s) | 268, 509 |
| BstSLI | GKGCMC | 1 cut(s) | 579 |
| BstUI | CGCG | 4 cut(s) | 141, 156, 250, 1152 |
| BstV1I | GCAGC | 6 cut(s) | 493, 542, 646, 678, 978, 1051 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| BstX2I | RGATCY | 1 cut(s) | 1053 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 307, 676 |
| BstYI | RGATCY | 1 cut(s) | 1053 |
| BsuRI | GGCC | 5 cut(s) | 577, 652, 749, 776, 1085 |
| BtgI | CCRYGG | 3 cut(s) | 36, 306, 471 |
| BtsCI | GGATG | 3 cut(s) | 925, 1108, 1150 |
| BtsIMutI | CAGTG | 1 cut(s) | 426 |
| BtuMI | TCGCGA | 1 cut(s) | 1152 |
| BveI | ACCTGC | 1 cut(s) | 628 |
| Cac8I | GCNNGC | 7 cut(s) | 118, 122, 283, 561, 751, 755, 1150 |
| CfoI | GCGC | 3 cut(s) | 252, 494, 1116 |
| Cfr10I | RCCGGY | 3 cut(s) | 215, 397, 662 |
| Cfr13I | GGNCC | 5 cut(s) | 18, 310, 575, 576, 747 |
| CseI | GACGC | 4 cut(s) | 63, 256, 740, 1145 |
| Csp6I | GTAC | 3 cut(s) | 346, 439, 524 |
| CspAI | ACCGGT | 2 cut(s) | 215, 397 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 553, 588 |
| CviAII | CATG | 4 cut(s) | 307, 343, 472, 1198 |
| CviQI | GTAC | 3 cut(s) | 346, 439, 524 |
| DdeI | CTNAG | 4 cut(s) | 316, 366, 452, 1043 |
| DinI | GGCGCC | 1 cut(s) | 1115 |
| DpnI | GATC | 4 cut(s) | 237, 384, 740, 1055 |
| DpnII | GATC | 4 cut(s) | 235, 382, 738, 1053 |
| Eam1104I | CTCTTC | 3 cut(s) | 141, 711, 755 |
| EarI | CTCTTC | 3 cut(s) | 141, 711, 755 |
| EciI | GGCGGA | 2 cut(s) | 255, 927 |
| Eco130I | CCWWGG | 5 cut(s) | 8, 306, 471, 1057, 1122 |
| Eco147I | AGGCCT | 2 cut(s) | 652, 776 |
| Eco24I | GRGCYC | 1 cut(s) | 579 |
| Eco31I | GGTCTC | 2 cut(s) | 917, 1067 |
| Eco47I | GGWCC | 2 cut(s) | 18, 310 |
| Eco72I | CACGTG | 1 cut(s) | 843 |
| Eco88I | CYCGRG | 5 cut(s) | 536, 646, 866, 1026, 1183 |
| Eco91I | GGTNACC | 1 cut(s) | 640 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1121 |
| EcoO109I | RGGNCCY | 3 cut(s) | 18, 576, 747 |
| EcoO65I | GGTNACC | 1 cut(s) | 640 |
| EcoRI | GAATTC | 1 cut(s) | 851 |
| EcoRII | CCWGG | 1 cut(s) | 509 |
| EcoT14I | CCWWGG | 5 cut(s) | 8, 306, 471, 1057, 1122 |
| EcoT38I | GRGCYC | 1 cut(s) | 579 |
| EgeI | GGCGCC | 1 cut(s) | 1115 |
| EheI | GGCGCC | 1 cut(s) | 1115 |
| ErhI | CCWWGG | 5 cut(s) | 8, 306, 471, 1057, 1122 |
| Esp3I | CGTCTC | 1 cut(s) | 720 |
| FaeI | CATG | 4 cut(s) | 310, 346, 475, 1201 |
| FaiI | YATR | 7 cut(s) | 129, 291, 308, 344, 473, 1142, 1199 |
| FaqI | GGGAC | 1 cut(s) | 31 |
| FatI | CATG | 4 cut(s) | 306, 342, 471, 1197 |
| FauI | CCCGC | 5 cut(s) | 6, 49, 109, 494, 807 |
| FblI | GTMKAC | 2 cut(s) | 77, 459 |
| FokI | GGATG | 3 cut(s) | 932, 1115, 1157 |
| FriOI | GRGCYC | 1 cut(s) | 579 |
| FspBI | CTAG | 4 cut(s) | 483, 827, 902, 1210 |
| GlaI | GCGC | 3 cut(s) | 251, 493, 1115 |
| GsaI | CCCAGC | 2 cut(s) | 357, 1079 |
| GsuI | CTGGAG | 2 cut(s) | 402, 1049 |
| HaeII | RGCGCY | 1 cut(s) | 1117 |
| HaeIII | GGCC | 5 cut(s) | 577, 652, 749, 776, 1085 |
| HapII | CCGG | 4 cut(s) | 216, 269, 398, 663 |
| HgaI | GACGC | 4 cut(s) | 63, 256, 740, 1145 |
| HhaI | GCGC | 3 cut(s) | 252, 494, 1116 |
| Hin1I | GRCGYC | 2 cut(s) | 74, 1114 |
| Hin1II | CATG | 4 cut(s) | 310, 346, 475, 1201 |
| Hin6I | GCGC | 3 cut(s) | 250, 492, 1114 |
| HinP1I | GCGC | 3 cut(s) | 250, 492, 1114 |
| HincII | GTYRAC | 2 cut(s) | 78, 246 |
| HindII | GTYRAC | 2 cut(s) | 78, 246 |
| HinfI | GANTC | 6 cut(s) | 184, 260, 364, 415, 830, 1181 |
| HpaII | CCGG | 4 cut(s) | 216, 269, 398, 663 |
| HphI | GGTGA | 8 cut(s) | 205, 373, 412, 556, 652, 799, 945, 1000 |
| Hpy166II | GTNNAC | 3 cut(s) | 78, 246, 460 |
| Hpy188I | TCNGA | 4 cut(s) | 97, 113, 319, 412 |
| Hpy188III | TCNNGA | 6 cut(s) | 85, 827, 856, 1066, 1151, 1185 |
| Hpy8I | GTNNAC | 3 cut(s) | 78, 246, 460 |
| Hpy99I | CGWCG | 6 cut(s) | 79, 380, 573, 734, 989, 1139 |
| HpyAV | CCTTC | 7 cut(s) | 31, 212, 535, 577, 598, 778, 1075 |
| HpyCH4IV | ACGT | 1 cut(s) | 842 |
| HpyCH4V | TGCA | 1 cut(s) | 994 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 433, 498, 665, 1145 |
| HpyF3I | CTNAG | 4 cut(s) | 316, 366, 452, 1043 |
| HpySE526I | ACGT | 1 cut(s) | 842 |
| Hsp92I | GRCGYC | 2 cut(s) | 74, 1114 |
| Hsp92II | CATG | 4 cut(s) | 310, 346, 475, 1201 |
| HspAI | GCGC | 3 cut(s) | 250, 492, 1114 |
| KasI | GGCGCC | 1 cut(s) | 1113 |
| Kzo9I | GATC | 4 cut(s) | 235, 382, 738, 1053 |
| LmnI | GCTCC | 2 cut(s) | 516, 631 |
| Lsp1109I | GCAGC | 6 cut(s) | 493, 542, 646, 678, 978, 1051 |
| LweI | GCATC | 2 cut(s) | 423, 1135 |
| MaeI | CTAG | 4 cut(s) | 483, 827, 902, 1210 |
| MaeII | ACGT | 1 cut(s) | 842 |
| MaeIII | GTNAC | 6 cut(s) | 361, 613, 640, 787, 951, 1012 |
| MalI | GATC | 4 cut(s) | 237, 384, 740, 1055 |
| MbiI | CCGCTC | 6 cut(s) | 116, 315, 822, 898, 1036, 1111 |
| MboI | GATC | 4 cut(s) | 235, 382, 738, 1053 |
| MboII | GAAGA | 6 cut(s) | 155, 158, 200, 725, 728, 772 |
| MflI | RGATCY | 1 cut(s) | 1053 |
| MhlI | GDGCHC | 1 cut(s) | 579 |
| MluCI | AATT | 2 cut(s) | 328, 851 |
| Mly113I | GGCGCC | 1 cut(s) | 1114 |
| MlyI | GAGTC | 3 cut(s) | 358, 409, 1175 |
| MmeI | TCCRAC | 3 cut(s) | 75, 127, 609 |
| MseI | TTAA | 2 cut(s) | 90, 324 |
| MslI | CAYNNNNRTG | 2 cut(s) | 674, 891 |
| MspA1I | CMGCKG | 3 cut(s) | 353, 757, 1042 |
| MspI | CCGG | 4 cut(s) | 216, 269, 398, 663 |
| MspR9I | CCNGG | 2 cut(s) | 270, 511 |
| MvaI | CCWGG | 1 cut(s) | 511 |
| MvnI | CGCG | 4 cut(s) | 141, 156, 250, 1152 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 433, 498, 665, 1145 |
| NarI | GGCGCC | 1 cut(s) | 1114 |
| NciI | CCSGG | 1 cut(s) | 270 |
| NcoI | CCATGG | 2 cut(s) | 306, 471 |
| NdeII | GATC | 4 cut(s) | 235, 382, 738, 1053 |
| NlaIII | CATG | 4 cut(s) | 310, 346, 475, 1201 |
| NlaIV | GGNNCC | 8 cut(s) | 19, 577, 578, 609, 633, 667, 748, 1115 |
| NmuCI | GTSAC | 5 cut(s) | 361, 640, 787, 951, 1012 |
| NruI | TCGCGA | 1 cut(s) | 1152 |
| NspI | RCATGY | 1 cut(s) | 346 |
| OliI | CACNNNNGTG | 1 cut(s) | 891 |
| PaeR7I | CTCGAG | 2 cut(s) | 646, 1183 |
| PaqCI | CACCTGC | 1 cut(s) | 628 |
| PceI | AGGCCT | 2 cut(s) | 652, 776 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 993, 1190 |
| PfeI | GAWTC | 3 cut(s) | 184, 260, 830 |
| PflFI | GACNNNGTC | 1 cut(s) | 1198 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 42 |
| PinAI | ACCGGT | 2 cut(s) | 215, 397 |
| PleI | GAGTC | 3 cut(s) | 358, 409, 1175 |
| PluTI | GGCGCC | 1 cut(s) | 1117 |
| PmaCI | CACGTG | 1 cut(s) | 843 |
| PmlI | CACGTG | 1 cut(s) | 843 |
| PpsI | GAGTC | 3 cut(s) | 358, 409, 1175 |
| Ppu21I | YACGTR | 1 cut(s) | 843 |
| PpuMI | RGGWCCY | 1 cut(s) | 18 |
| PshAI | GACNNNNGTC | 2 cut(s) | 204, 979 |
| PshBI | ATTAAT | 1 cut(s) | 324 |
| PsiI | TTATAA | 1 cut(s) | 129 |
| Psp5II | RGGWCCY | 1 cut(s) | 18 |
| Psp6I | CCWGG | 1 cut(s) | 509 |
| PspCI | CACGTG | 1 cut(s) | 843 |
| PspEI | GGTNACC | 1 cut(s) | 640 |
| PspFI | CCCAGC | 2 cut(s) | 353, 1075 |
| PspGI | CCWGG | 1 cut(s) | 509 |
| PspN4I | GGNNCC | 8 cut(s) | 19, 577, 578, 609, 633, 667, 748, 1115 |
| PspOMI | GGGCCC | 1 cut(s) | 575 |
| PspPI | GGNCC | 5 cut(s) | 18, 310, 575, 576, 747 |
| PspPPI | RGGWCCY | 1 cut(s) | 18 |
| PspXI | VCTCGAGB | 1 cut(s) | 646 |
| PsuI | RGATCY | 1 cut(s) | 1053 |
| PsyI | GACNNNGTC | 1 cut(s) | 1198 |
| PvuII | CAGCTG | 1 cut(s) | 1042 |
| RruI | TCGCGA | 1 cut(s) | 1152 |
| RsaI | GTAC | 3 cut(s) | 347, 440, 525 |
| RsaNI | GTAC | 3 cut(s) | 346, 439, 524 |
| RseI | CAYNNNNRTG | 2 cut(s) | 674, 891 |
| SalI | GTCGAC | 1 cut(s) | 76 |
| SaqAI | TTAA | 2 cut(s) | 90, 324 |
| Sau3AI | GATC | 4 cut(s) | 235, 382, 738, 1053 |
| Sau96I | GGNCC | 5 cut(s) | 18, 310, 575, 576, 747 |
| SchI | GAGTC | 3 cut(s) | 358, 409, 1175 |
| ScrFI | CCNGG | 2 cut(s) | 270, 511 |
| SduI | GDGCHC | 1 cut(s) | 579 |
| SfaNI | GCATC | 2 cut(s) | 423, 1135 |
| SfoI | GGCGCC | 1 cut(s) | 1115 |
| Sfr274I | CTCGAG | 2 cut(s) | 646, 1183 |
| SinI | GGWCC | 2 cut(s) | 18, 310 |
| SlaI | CTCGAG | 2 cut(s) | 646, 1183 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 674, 891 |
| SmlI | CTYRAG | 2 cut(s) | 646, 1183 |
| SmoI | CTYRAG | 2 cut(s) | 646, 1183 |
| Sse9I | AATT | 2 cut(s) | 328, 851 |
| SseBI | AGGCCT | 2 cut(s) | 652, 776 |
| SspDI | GGCGCC | 1 cut(s) | 1113 |
| SspMI | CTAG | 4 cut(s) | 483, 827, 902, 1210 |
| StuI | AGGCCT | 2 cut(s) | 652, 776 |
| StyD4I | CCNGG | 2 cut(s) | 268, 509 |
| StyI | CCWWGG | 5 cut(s) | 8, 306, 471, 1057, 1122 |
| TaiI | ACGT | 1 cut(s) | 845 |
| TaqI | TCGA | 8 cut(s) | 62, 77, 234, 431, 647, 804, 965, 1184 |
| TasI | AATT | 2 cut(s) | 328, 851 |
| TauI | GCSGC | 5 cut(s) | 353, 637, 901, 1039, 1114 |
| TfiI | GAWTC | 3 cut(s) | 184, 260, 830 |
| Tru1I | TTAA | 2 cut(s) | 90, 324 |
| Tru9I | TTAA | 2 cut(s) | 90, 324 |
| TscAI | CASTG | 1 cut(s) | 426 |
| TseFI | GTSAC | 5 cut(s) | 361, 640, 787, 951, 1012 |
| TseI | GCWGC | 6 cut(s) | 506, 530, 659, 691, 991, 1039 |
| Tsp45I | GTSAC | 5 cut(s) | 361, 640, 787, 951, 1012 |
| TspDTI | ATGAA | 1 cut(s) | 726 |
| TspGWI | ACGGA | 2 cut(s) | 53, 973 |
| TspRI | CASTG | 1 cut(s) | 426 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1198 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 42 |
| VpaK11BI | GGWCC | 2 cut(s) | 18, 310 |
| VspI | ATTAAT | 1 cut(s) | 324 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1121 |
| XapI | RAATTY | 1 cut(s) | 851 |
| XbaI | TCTAGA | 1 cut(s) | 826 |
| XceI | RCATGY | 1 cut(s) | 346 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1093 |
| XhoI | CTCGAG | 2 cut(s) | 646, 1183 |
| XmiI | GTMKAC | 2 cut(s) | 77, 459 |
| XspI | CTAG | 4 cut(s) | 483, 827, 902, 1210 |