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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 408 |
| AarI | CACCTGC | 2 cut(s) | 293, 898 |
| Acc36I | ACCTGC | 2 cut(s) | 293, 898 |
| Acc65I | GGTACC | 1 cut(s) | 758 |
| AccB1I | GGYRCC | 6 cut(s) | 214, 329, 658, 758, 1316, 1406 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 178, 1326 |
| AccBSI | CCGCTC | 1 cut(s) | 915 |
| AccI | GTMKAC | 1 cut(s) | 274 |
| AccII | CGCG | 3 cut(s) | 435, 554, 576 |
| AccIII | TCCGGA | 1 cut(s) | 1441 |
| AcoI | YGGCCR | 1 cut(s) | 1032 |
| AcsI | RAATTY | 1 cut(s) | 174 |
| AcuI | CTGAAG | 3 cut(s) | 363, 761, 1157 |
| AfaI | GTAC | 3 cut(s) | 608, 760, 1247 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 178, 323, 326, 339, 668, 741, 1207, 1326, 1402 |
| AflII | CTTAAG | 1 cut(s) | 311 |
| AflIII | ACRYGT | 1 cut(s) | 552 |
| AgsI | TTSAA | 5 cut(s) | 76, 1040, 1054, 1121, 1127 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1023 |
| AjnI | CCWGG | 3 cut(s) | 46, 138, 322 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 959, 991 |
| AluBI | AGCT | 6 cut(s) | 504, 655, 787, 1190, 1337, 1400 |
| AluI | AGCT | 6 cut(s) | 504, 655, 787, 1190, 1337, 1400 |
| Alw21I | GWGCWC | 1 cut(s) | 477 |
| Alw26I | GTCTC | 2 cut(s) | 824, 1010 |
| Ama87I | CYCGRG | 2 cut(s) | 1373, 1395 |
| Aor13HI | TCCGGA | 1 cut(s) | 1441 |
| AoxI | GGCC | 5 cut(s) | 689, 743, 840, 1032, 1059 |
| ApaI | GGGCCC | 1 cut(s) | 844 |
| ApoI | RAATTY | 1 cut(s) | 174 |
| AseI | ATTAAT | 1 cut(s) | 585 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1337 |
| Asp718I | GGTACC | 1 cut(s) | 758 |
| AspLEI | GCGC | 4 cut(s) | 200, 286, 578, 702 |
| AspS9I | GGNCC | 5 cut(s) | 234, 571, 690, 840, 841 |
| AsuC2I | CCSGG | 1 cut(s) | 1351 |
| AsuHPI | GGTGA | 7 cut(s) | 317, 484, 742, 922, 1181, 1342, 1445 |
| AsuII | TTCGAA | 1 cut(s) | 1341 |
| AsuNHI | GCTAGC | 1 cut(s) | 619 |
| AvaI | CYCGRG | 2 cut(s) | 1373, 1395 |
| AvaII | GGWCC | 2 cut(s) | 234, 571 |
| AxyI | CCTNAGG | 1 cut(s) | 666 |
| BaeGI | GKGCMC | 2 cut(s) | 334, 844 |
| BanI | GGYRCC | 6 cut(s) | 214, 329, 658, 758, 1316, 1406 |
| BanII | GRGCYC | 3 cut(s) | 844, 1086, 1374 |
| BbsI | GAAGAC | 2 cut(s) | 479, 825 |
| Bbv12I | GWGCWC | 1 cut(s) | 477 |
| BbvCI | CCTCAGC | 1 cut(s) | 1401 |
| BccI | CCATC | 4 cut(s) | 188, 332, 562, 1328 |
| BceAI | ACGGC | 4 cut(s) | 55, 1019, 1047, 1145 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1192, 1226, 1364, 1398 |
| BciT130I | CCWGG | 3 cut(s) | 48, 140, 324 |
| BciVI | GTATCC | 1 cut(s) | 526 |
| BcnI | CCSGG | 1 cut(s) | 1351 |
| BcoDI | GTCTC | 2 cut(s) | 824, 1010 |
| BfaI | CTAG | 3 cut(s) | 620, 920, 1359 |
| BfmI | CTRYAG | 1 cut(s) | 1284 |
| BfoI | RGCGCY | 2 cut(s) | 201, 287 |
| BfrI | CTTAAG | 1 cut(s) | 311 |
| BfuAI | ACCTGC | 2 cut(s) | 293, 898 |
| BfuI | GTATCC | 1 cut(s) | 526 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 48, 106, 670 |
| BlpI | GCTNAGC | 1 cut(s) | 627 |
| Bme1390I | CCNGG | 4 cut(s) | 48, 140, 324, 1351 |
| Bme18I | GGWCC | 2 cut(s) | 234, 571 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1023 |
| BmeT110I | CYCGRG | 2 cut(s) | 1373, 1395 |
| BmgT120I | GGNCC | 5 cut(s) | 234, 571, 690, 840, 841 |
| BmrFI | CCNGG | 4 cut(s) | 48, 140, 324, 1351 |
| BmrI | ACTGGG | 2 cut(s) | 729, 1336 |
| BmsI | GCATC | 2 cut(s) | 84, 98 |
| BmtI | GCTAGC | 1 cut(s) | 623 |
| BmuI | ACTGGG | 2 cut(s) | 729, 1336 |
| BoxI | GACNNNNGTC | 2 cut(s) | 483, 638 |
| BpiI | GAAGAC | 2 cut(s) | 479, 825 |
| BpmI | CTGGAG | 2 cut(s) | 617, 1184 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1401, 1414 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 627 |
| Bpu14I | TTCGAA | 1 cut(s) | 1341 |
| BpuMI | CCSGG | 1 cut(s) | 1351 |
| Bsa29I | ATCGAT | 1 cut(s) | 92 |
| BsaAI | YACGTR | 1 cut(s) | 278 |
| BsaI | GGTCTC | 1 cut(s) | 824 |
| BsaJI | CCNNGG | 6 cut(s) | 139, 241, 287, 323, 712, 740 |
| BsaWI | WCCGGW | 1 cut(s) | 1441 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 590, 620, 709, 739, 959, 989, 1453, 1483 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 178, 323, 326, 339, 668, 741, 1207, 1326, 1402 |
| Bse1I | ACTGG | 2 cut(s) | 735, 1331 |
| Bse21I | CCTNAGG | 1 cut(s) | 666 |
| BseAI | TCCGGA | 1 cut(s) | 1441 |
| BseBI | CCWGG | 3 cut(s) | 48, 140, 324 |
| BseCI | ATCGAT | 1 cut(s) | 92 |
| BseDI | CCNNGG | 6 cut(s) | 139, 241, 287, 323, 712, 740 |
| BseGI | GGATG | 2 cut(s) | 85, 1018 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 178, 323, 326, 339, 668, 741, 1207, 1326, 1402 |
| BseMII | CTCAG | 7 cut(s) | 6, 641, 951, 1182, 1392, 1428, 1469 |
| BseNI | ACTGG | 2 cut(s) | 735, 1331 |
| BseRI | GAGGAG | 1 cut(s) | 1210 |
| BseSI | GKGCMC | 2 cut(s) | 334, 844 |
| BseX3I | CGGCCG | 1 cut(s) | 1032 |
| BseYI | CCCAGC | 1 cut(s) | 614 |
| BsgI | GTGCAG | 3 cut(s) | 240, 727, 926 |
| Bsh1236I | CGCG | 3 cut(s) | 435, 554, 576 |
| Bsh1285I | CGRYCG | 2 cut(s) | 642, 1035 |
| BshFI | GGCC | 5 cut(s) | 691, 745, 842, 1034, 1061 |
| BshNI | GGYRCC | 6 cut(s) | 214, 329, 658, 758, 1316, 1406 |
| BshVI | ATCGAT | 1 cut(s) | 92 |
| BsiEI | CGRYCG | 2 cut(s) | 642, 1035 |
| BsiHKAI | GWGCWC | 1 cut(s) | 477 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1373, 1395 |
| BsiSI | CCGG | 2 cut(s) | 1350, 1442 |
| BslFI | GGGAC | 1 cut(s) | 782 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 178, 323, 326, 339, 668, 741, 1207, 1326, 1402 |
| BsmAI | GTCTC | 2 cut(s) | 824, 1010 |
| BsmFI | GGGAC | 1 cut(s) | 782 |
| BsnI | GGCC | 5 cut(s) | 691, 745, 842, 1034, 1061 |
| Bso31I | GGTCTC | 1 cut(s) | 824 |
| BsoBI | CYCGRG | 2 cut(s) | 1373, 1395 |
| Bsp119I | TTCGAA | 1 cut(s) | 1341 |
| Bsp120I | GGGCCC | 1 cut(s) | 840 |
| Bsp1286I | GDGCHC | 5 cut(s) | 334, 477, 844, 1086, 1374 |
| Bsp13I | TCCGGA | 1 cut(s) | 1441 |
| Bsp1407I | TGTACA | 1 cut(s) | 606 |
| Bsp143I | GATC | 3 cut(s) | 129, 513, 643 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 627 |
| BspANI | GGCC | 5 cut(s) | 691, 745, 842, 1034, 1061 |
| BspCNI | CTCAG | 7 cut(s) | 7, 640, 952, 1183, 1393, 1427, 1468 |
| BspDI | ATCGAT | 1 cut(s) | 92 |
| BspEI | TCCGGA | 1 cut(s) | 1441 |
| BspFNI | CGCG | 3 cut(s) | 435, 554, 576 |
| BspMAI | CTGCAG | 1 cut(s) | 1288 |
| BspMI | ACCTGC | 2 cut(s) | 293, 898 |
| BspOI | GCTAGC | 1 cut(s) | 623 |
| BspT104I | TTCGAA | 1 cut(s) | 1341 |
| BspT107I | GGYRCC | 6 cut(s) | 214, 329, 658, 758, 1316, 1406 |
| BspTI | CTTAAG | 1 cut(s) | 311 |
| BspTNI | GGTCTC | 1 cut(s) | 824 |
| BsrBI | CCGCTC | 1 cut(s) | 915 |
| BsrGI | TGTACA | 1 cut(s) | 606 |
| BsrI | ACTGG | 2 cut(s) | 735, 1331 |
| BssECI | CCNNGG | 6 cut(s) | 139, 241, 287, 323, 712, 740 |
| BssMI | GATC | 3 cut(s) | 129, 513, 643 |
| BssNAI | GTATAC | 1 cut(s) | 275 |
| BssT1I | CCWWGG | 1 cut(s) | 287 |
| Bst1107I | GTATAC | 1 cut(s) | 275 |
| Bst2UI | CCWGG | 3 cut(s) | 48, 140, 324 |
| Bst4CI | ACNGT | 5 cut(s) | 242, 496, 640, 886, 1021 |
| Bst6I | CTCTTC | 3 cut(s) | 420, 807, 848 |
| BstAFI | CTTAAG | 1 cut(s) | 311 |
| BstAUI | TGTACA | 1 cut(s) | 606 |
| BstBAI | YACGTR | 1 cut(s) | 278 |
| BstBI | TTCGAA | 1 cut(s) | 1341 |
| BstDEI | CTNAG | 9 cut(s) | 15, 627, 666, 960, 1191, 1401, 1414, 1455, 1497 |
| BstDSI | CCRYGG | 1 cut(s) | 241 |
| BstF5I | GGATG | 2 cut(s) | 85, 1018 |
| BstFNI | CGCG | 3 cut(s) | 435, 554, 576 |
| BstH2I | RGCGCY | 2 cut(s) | 201, 287 |
| BstHHI | GCGC | 4 cut(s) | 200, 286, 578, 702 |
| BstKTI | GATC | 3 cut(s) | 132, 516, 646 |
| BstMAI | GTCTC | 2 cut(s) | 824, 1010 |
| BstMBI | GATC | 3 cut(s) | 129, 513, 643 |
| BstMCI | CGRYCG | 2 cut(s) | 642, 1035 |
| BstNI | CCWGG | 3 cut(s) | 48, 140, 324 |
| BstNSI | RCATGY | 2 cut(s) | 113, 1303 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 483, 638 |
| BstSCI | CCNGG | 4 cut(s) | 46, 138, 322, 1349 |
| BstSFI | CTRYAG | 1 cut(s) | 1284 |
| BstSLI | GKGCMC | 2 cut(s) | 334, 844 |
| BstSNI | TACGTA | 1 cut(s) | 278 |
| BstUI | CGCG | 3 cut(s) | 435, 554, 576 |
| BstV2I | GAAGAC | 2 cut(s) | 479, 825 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 568 |
| BstZ17I | GTATAC | 1 cut(s) | 275 |
| BstZI | CGGCCG | 1 cut(s) | 1032 |
| Bsu15I | ATCGAT | 1 cut(s) | 92 |
| Bsu36I | CCTNAGG | 1 cut(s) | 666 |
| BsuI | GTATCC | 1 cut(s) | 526 |
| BsuRI | GGCC | 5 cut(s) | 691, 745, 842, 1034, 1061 |
| BsuTUI | ATCGAT | 1 cut(s) | 92 |
| BtgI | CCRYGG | 1 cut(s) | 241 |
| BtgZI | GCGATG | 1 cut(s) | 819 |
| BtsCI | GGATG | 2 cut(s) | 85, 1018 |
| BtsI | GCAGTG | 2 cut(s) | 302, 1387 |
| BtsIMutI | CAGTG | 4 cut(s) | 302, 1026, 1083, 1387 |
| BveI | ACCTGC | 2 cut(s) | 293, 898 |
| CfoI | GCGC | 4 cut(s) | 200, 286, 578, 702 |
| Cfr13I | GGNCC | 5 cut(s) | 234, 571, 690, 840, 841 |
| ClaI | ATCGAT | 1 cut(s) | 92 |
| CseI | GACGC | 5 cut(s) | 53, 424, 713, 1013, 1427 |
| Csp6I | GTAC | 3 cut(s) | 607, 759, 1246 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 867, 902 |
| CviAII | CATG | 7 cut(s) | 110, 118, 419, 1088, 1258, 1300, 1504 |
| CviQI | GTAC | 3 cut(s) | 607, 759, 1246 |
| DdeI | CTNAG | 9 cut(s) | 15, 627, 666, 960, 1191, 1401, 1414, 1455, 1497 |
| DpnI | GATC | 3 cut(s) | 131, 515, 645 |
| DpnII | GATC | 3 cut(s) | 129, 513, 643 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1023 |
| EaeI | YGGCCR | 1 cut(s) | 1032 |
| EagI | CGGCCG | 1 cut(s) | 1032 |
| Eam1104I | CTCTTC | 3 cut(s) | 420, 807, 848 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1023 |
| EarI | CTCTTC | 3 cut(s) | 420, 807, 848 |
| EciI | GGCGGA | 4 cut(s) | 29, 57, 125, 261 |
| EclXI | CGGCCG | 1 cut(s) | 1032 |
| Eco105I | TACGTA | 1 cut(s) | 278 |
| Eco130I | CCWWGG | 1 cut(s) | 287 |
| Eco147I | AGGCCT | 1 cut(s) | 745 |
| Eco24I | GRGCYC | 3 cut(s) | 844, 1086, 1374 |
| Eco31I | GGTCTC | 1 cut(s) | 824 |
| Eco47I | GGWCC | 2 cut(s) | 234, 571 |
| Eco52I | CGGCCG | 1 cut(s) | 1032 |
| Eco57I | CTGAAG | 3 cut(s) | 363, 761, 1157 |
| Eco81I | CCTNAGG | 1 cut(s) | 666 |
| Eco88I | CYCGRG | 2 cut(s) | 1373, 1395 |
| EcoO109I | RGGNCCY | 2 cut(s) | 690, 840 |
| EcoRII | CCWGG | 3 cut(s) | 46, 138, 322 |
| EcoT14I | CCWWGG | 1 cut(s) | 287 |
| EcoT22I | ATGCAT | 1 cut(s) | 123 |
| EcoT38I | GRGCYC | 3 cut(s) | 844, 1086, 1374 |
| ErhI | CCWWGG | 1 cut(s) | 287 |
| FaeI | CATG | 7 cut(s) | 113, 121, 422, 1091, 1261, 1303, 1507 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 116, 148 |
| FaqI | GGGAC | 1 cut(s) | 782 |
| FatI | CATG | 7 cut(s) | 109, 117, 418, 1087, 1257, 1299, 1503 |
| FauI | CCCGC | 6 cut(s) | 24, 345, 642, 673, 851, 1354 |
| FauNDI | CATATG | 1 cut(s) | 937 |
| FblI | GTMKAC | 1 cut(s) | 274 |
| FokI | GGATG | 2 cut(s) | 92, 1025 |
| FriOI | GRGCYC | 3 cut(s) | 844, 1086, 1374 |
| FspBI | CTAG | 3 cut(s) | 620, 920, 1359 |
| GlaI | GCGC | 4 cut(s) | 199, 285, 577, 701 |
| GsaI | CCCAGC | 1 cut(s) | 618 |
| GsuI | CTGGAG | 2 cut(s) | 617, 1184 |
| HaeII | RGCGCY | 2 cut(s) | 201, 287 |
| HaeIII | GGCC | 5 cut(s) | 691, 745, 842, 1034, 1061 |
| HapII | CCGG | 2 cut(s) | 1350, 1442 |
| HgaI | GACGC | 5 cut(s) | 53, 424, 713, 1013, 1427 |
| HhaI | GCGC | 4 cut(s) | 200, 286, 578, 702 |
| Hin1II | CATG | 7 cut(s) | 113, 121, 422, 1091, 1261, 1303, 1507 |
| Hin6I | GCGC | 4 cut(s) | 198, 284, 576, 700 |
| HinP1I | GCGC | 4 cut(s) | 198, 284, 576, 700 |
| HindIII | AAGCTT | 1 cut(s) | 1335 |
| HinfI | GANTC | 5 cut(s) | 463, 923, 956, 1451, 1462 |
| HpaII | CCGG | 2 cut(s) | 1350, 1442 |
| HphI | GGTGA | 7 cut(s) | 317, 484, 742, 922, 1181, 1342, 1445 |
| Hpy166II | GTNNAC | 4 cut(s) | 275, 308, 609, 728 |
| Hpy188I | TCNGA | 7 cut(s) | 532, 741, 780, 951, 961, 1029, 1365 |
| Hpy188III | TCNNGA | 5 cut(s) | 381, 596, 920, 1156, 1442 |
| Hpy8I | GTNNAC | 4 cut(s) | 275, 308, 609, 728 |
| Hpy99I | CGWCG | 4 cut(s) | 532, 640, 1007, 1033 |
| HpyAV | CCTTC | 7 cut(s) | 70, 387, 1060, 1072, 1132, 1267, 1306 |
| HpyCH4III | ACNGT | 5 cut(s) | 242, 496, 640, 886, 1021 |
| HpyCH4IV | ACGT | 3 cut(s) | 277, 471, 771 |
| HpyCH4V | TGCA | 8 cut(s) | 121, 257, 295, 403, 708, 907, 935, 1286 |
| HpyF3I | CTNAG | 9 cut(s) | 15, 627, 666, 960, 1191, 1401, 1414, 1455, 1497 |
| HpySE526I | ACGT | 3 cut(s) | 277, 471, 771 |
| Hsp92II | CATG | 7 cut(s) | 113, 121, 422, 1091, 1261, 1303, 1507 |
| HspAI | GCGC | 4 cut(s) | 198, 284, 576, 700 |
| Kpn2I | TCCGGA | 1 cut(s) | 1441 |
| KpnI | GGTACC | 1 cut(s) | 762 |
| Kzo9I | GATC | 3 cut(s) | 129, 513, 643 |
| LmnI | GCTCC | 9 cut(s) | 369, 501, 652, 683, 874, 999, 1089, 1197, 1369 |
| LweI | GCATC | 2 cut(s) | 84, 98 |
| MaeI | CTAG | 3 cut(s) | 620, 920, 1359 |
| MaeII | ACGT | 3 cut(s) | 277, 471, 771 |
| MaeIII | GTNAC | 4 cut(s) | 7, 145, 467, 1107 |
| MalI | GATC | 3 cut(s) | 131, 515, 645 |
| MbiI | CCGCTC | 1 cut(s) | 915 |
| MboI | GATC | 3 cut(s) | 129, 513, 643 |
| MboII | GAAGA | 9 cut(s) | 124, 437, 479, 767, 793, 821, 824, 830, 865 |
| MhlI | GDGCHC | 5 cut(s) | 334, 477, 844, 1086, 1374 |
| MluCI | AATT | 6 cut(s) | 23, 174, 267, 520, 1235, 1513 |
| MluI | ACGCGT | 1 cut(s) | 552 |
| MlyI | GAGTC | 2 cut(s) | 917, 1456 |
| MmeI | TCCRAC | 4 cut(s) | 261, 510, 990, 1052 |
| Mph1103I | ATGCAT | 1 cut(s) | 123 |
| MroI | TCCGGA | 1 cut(s) | 1441 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1337 |
| MseI | TTAA | 5 cut(s) | 26, 312, 386, 585, 1230 |
| MspA1I | CMGCKG | 6 cut(s) | 14, 614, 649, 755, 1217, 1459 |
| MspCI | CTTAAG | 1 cut(s) | 311 |
| MspI | CCGG | 2 cut(s) | 1350, 1442 |
| MspR9I | CCNGG | 4 cut(s) | 48, 140, 324, 1351 |
| MvaI | CCWGG | 3 cut(s) | 48, 140, 324 |
| MvnI | CGCG | 3 cut(s) | 435, 554, 576 |
| NciI | CCSGG | 1 cut(s) | 1351 |
| NdeI | CATATG | 1 cut(s) | 937 |
| NdeII | GATC | 3 cut(s) | 129, 513, 643 |
| NheI | GCTAGC | 1 cut(s) | 619 |
| NlaIII | CATG | 7 cut(s) | 113, 121, 422, 1091, 1261, 1303, 1507 |
| NmeAIII | GCCGAG | 2 cut(s) | 737, 1037 |
| NmuCI | GTSAC | 2 cut(s) | 145, 1107 |
| NsiI | ATGCAT | 1 cut(s) | 123 |
| NspI | RCATGY | 2 cut(s) | 113, 1303 |
| NspV | TTCGAA | 1 cut(s) | 1341 |
| PaeI | GCATGC | 1 cut(s) | 113 |
| PaqCI | CACCTGC | 2 cut(s) | 293, 898 |
| PceI | AGGCCT | 1 cut(s) | 745 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1337 |
| PfeI | GAWTC | 3 cut(s) | 463, 956, 1451 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 178, 1326 |
| PleI | GAGTC | 2 cut(s) | 917, 1456 |
| PpsI | GAGTC | 2 cut(s) | 917, 1456 |
| Ppu21I | YACGTR | 1 cut(s) | 278 |
| PshAI | GACNNNNGTC | 2 cut(s) | 483, 638 |
| PshBI | ATTAAT | 1 cut(s) | 585 |
| PsiI | TTATAA | 1 cut(s) | 408 |
| Psp6I | CCWGG | 3 cut(s) | 46, 138, 322 |
| PspFI | CCCAGC | 1 cut(s) | 614 |
| PspGI | CCWGG | 3 cut(s) | 46, 138, 322 |
| PspOMI | GGGCCC | 1 cut(s) | 840 |
| PspPI | GGNCC | 5 cut(s) | 234, 571, 690, 840, 841 |
| PstI | CTGCAG | 1 cut(s) | 1288 |
| RsaI | GTAC | 3 cut(s) | 608, 760, 1247 |
| RsaNI | GTAC | 3 cut(s) | 607, 759, 1246 |
| SaqAI | TTAA | 5 cut(s) | 26, 312, 386, 585, 1230 |
| Sau3AI | GATC | 3 cut(s) | 129, 513, 643 |
| Sau96I | GGNCC | 5 cut(s) | 234, 571, 690, 840, 841 |
| SchI | GAGTC | 2 cut(s) | 917, 1456 |
| ScrFI | CCNGG | 4 cut(s) | 48, 140, 324, 1351 |
| SduI | GDGCHC | 5 cut(s) | 334, 477, 844, 1086, 1374 |
| SfaNI | GCATC | 2 cut(s) | 84, 98 |
| SfcI | CTRYAG | 1 cut(s) | 1284 |
| SfuI | TTCGAA | 1 cut(s) | 1341 |
| SinI | GGWCC | 2 cut(s) | 234, 571 |
| SmlI | CTYRAG | 1 cut(s) | 311 |
| SmoI | CTYRAG | 1 cut(s) | 311 |
| SnaBI | TACGTA | 1 cut(s) | 278 |
| SphI | GCATGC | 1 cut(s) | 113 |
| Sse9I | AATT | 6 cut(s) | 23, 174, 267, 520, 1235, 1513 |
| SseBI | AGGCCT | 1 cut(s) | 745 |
| SspMI | CTAG | 3 cut(s) | 620, 920, 1359 |
| StuI | AGGCCT | 1 cut(s) | 745 |
| StyD4I | CCNGG | 4 cut(s) | 46, 138, 322, 1349 |
| StyI | CCWWGG | 1 cut(s) | 287 |
| TaaI | ACNGT | 5 cut(s) | 242, 496, 640, 886, 1021 |
| TaiI | ACGT | 3 cut(s) | 280, 474, 774 |
| TaqII | GACCGA | 1 cut(s) | 968 |
| TasI | AATT | 6 cut(s) | 23, 174, 267, 520, 1235, 1513 |
| TatI | WGTACW | 2 cut(s) | 606, 1245 |
| TauI | GCSGC | 9 cut(s) | 116, 319, 322, 549, 626, 664, 1203, 1217, 1271 |
| TfiI | GAWTC | 3 cut(s) | 463, 956, 1451 |
| Tru1I | TTAA | 5 cut(s) | 26, 312, 386, 585, 1230 |
| Tru9I | TTAA | 5 cut(s) | 26, 312, 386, 585, 1230 |
| TscAI | CASTG | 4 cut(s) | 302, 1026, 1083, 1387 |
| TseFI | GTSAC | 2 cut(s) | 145, 1107 |
| Tsp45I | GTSAC | 2 cut(s) | 145, 1107 |
| TspDTI | ATGAA | 2 cut(s) | 822, 1492 |
| TspGWI | ACGGA | 2 cut(s) | 473, 516 |
| TspRI | CASTG | 4 cut(s) | 302, 1026, 1083, 1387 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 178, 1326 |
| Vha464I | CTTAAG | 1 cut(s) | 311 |
| VpaK11BI | GGWCC | 2 cut(s) | 234, 571 |
| VspI | ATTAAT | 1 cut(s) | 585 |
| XapI | RAATTY | 1 cut(s) | 174 |
| XbaI | TCTAGA | 1 cut(s) | 919 |
| XceI | RCATGY | 2 cut(s) | 113, 1303 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 294 |
| XmiI | GTMKAC | 1 cut(s) | 274 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1337 |
| XspI | CTAG | 3 cut(s) | 620, 920, 1359 |
| Zsp2I | ATGCAT | 1 cut(s) | 123 |