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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 236 |
| Acc65I | GGTACC | 1 cut(s) | 341 |
| AccB1I | GGYRCC | 1 cut(s) | 341 |
| AccBSI | CCGCTC | 3 cut(s) | 289, 316, 707 |
| AccII | CGCG | 1 cut(s) | 9 |
| AcoI | YGGCCR | 3 cut(s) | 391, 592, 666 |
| AcsI | RAATTY | 1 cut(s) | 638 |
| AcuI | CTGAAG | 2 cut(s) | 286, 720 |
| AcyI | GRCGYC | 2 cut(s) | 233, 564 |
| AfaI | GTAC | 1 cut(s) | 343 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 13 |
| AjnI | CCWGG | 3 cut(s) | 423, 555, 651 |
| AleI | CACNNNNGTG | 1 cut(s) | 50 |
| AluBI | AGCT | 6 cut(s) | 29, 91, 295, 381, 577, 628 |
| AluI | AGCT | 6 cut(s) | 29, 91, 295, 381, 577, 628 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 309 |
| Ama87I | CYCGRG | 1 cut(s) | 567 |
| AoxI | GGCC | 6 cut(s) | 15, 384, 391, 592, 666, 702 |
| ApeKI | GCWGC | 7 cut(s) | 91, 172, 295, 460, 529, 604, 628 |
| ApoI | RAATTY | 1 cut(s) | 638 |
| Asp718I | GGTACC | 1 cut(s) | 341 |
| AspLEI | GCGC | 1 cut(s) | 465 |
| AspS9I | GGNCC | 3 cut(s) | 15, 56, 553 |
| AsuC2I | CCSGG | 1 cut(s) | 596 |
| AsuHPI | GGTGA | 6 cut(s) | 134, 241, 247, 363, 556, 634 |
| AvaI | CYCGRG | 1 cut(s) | 567 |
| AvaII | GGWCC | 2 cut(s) | 56, 553 |
| BanI | GGYRCC | 1 cut(s) | 341 |
| BarI | GAAGNNNNNNTAC | 3 cut(s) | 36, 718, 750 |
| BbvCI | CCTCAGC | 1 cut(s) | 615 |
| BbvI | GCAGC | 7 cut(s) | 78, 184, 282, 447, 541, 615, 616 |
| BccI | CCATC | 5 cut(s) | 83, 188, 332, 402, 448 |
| BceAI | ACGGC | 1 cut(s) | 431 |
| BciT130I | CCWGG | 3 cut(s) | 425, 557, 653 |
| BciVI | GTATCC | 2 cut(s) | 346, 659 |
| BcnI | CCSGG | 1 cut(s) | 596 |
| BfaI | CTAG | 2 cut(s) | 279, 744 |
| BfmI | CTRYAG | 2 cut(s) | 24, 92 |
| BfuI | GTATCC | 2 cut(s) | 346, 659 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 452 |
| Bme1390I | CCNGG | 4 cut(s) | 425, 557, 596, 653 |
| Bme18I | GGWCC | 2 cut(s) | 56, 553 |
| BmeT110I | CYCGRG | 1 cut(s) | 567 |
| BmgT120I | GGNCC | 3 cut(s) | 15, 56, 553 |
| BmiI | GGNNCC | 3 cut(s) | 39, 57, 343 |
| BmrFI | CCNGG | 4 cut(s) | 425, 557, 596, 653 |
| BmsI | GCATC | 1 cut(s) | 315 |
| Bpu10I | CCTNAGC | 1 cut(s) | 615 |
| BpuMI | CCSGG | 1 cut(s) | 596 |
| BsaHI | GRCGYC | 2 cut(s) | 233, 564 |
| BsaJI | CCNNGG | 5 cut(s) | 7, 48, 468, 540, 669 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 218, 233, 248, 263 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 13 |
| Bse118I | RCCGGY | 1 cut(s) | 218 |
| BseBI | CCWGG | 3 cut(s) | 425, 557, 653 |
| BseDI | CCNNGG | 5 cut(s) | 7, 48, 468, 540, 669 |
| BseGI | GGATG | 5 cut(s) | 75, 142, 199, 343, 440 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BseMII | CTCAG | 1 cut(s) | 606 |
| BseRI | GAGGAG | 1 cut(s) | 140 |
| BseXI | GCAGC | 7 cut(s) | 78, 184, 282, 447, 541, 615, 616 |
| BseYI | CCCAGC | 1 cut(s) | 319 |
| Bsh1236I | CGCG | 1 cut(s) | 9 |
| BshFI | GGCC | 6 cut(s) | 17, 386, 393, 594, 668, 704 |
| BshNI | GGYRCC | 1 cut(s) | 341 |
| BsiHKCI | CYCGRG | 1 cut(s) | 567 |
| BsiSI | CCGG | 2 cut(s) | 219, 595 |
| BslFI | GGGAC | 3 cut(s) | 69, 525, 611 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BsmFI | GGGAC | 3 cut(s) | 69, 525, 611 |
| BsnI | GGCC | 6 cut(s) | 17, 386, 393, 594, 668, 704 |
| BsoBI | CYCGRG | 1 cut(s) | 567 |
| BspANI | GGCC | 6 cut(s) | 17, 386, 393, 594, 668, 704 |
| BspCNI | CTCAG | 1 cut(s) | 607 |
| BspFNI | CGCG | 1 cut(s) | 9 |
| BspLI | GGNNCC | 3 cut(s) | 39, 57, 343 |
| BspMAI | CTGCAG | 1 cut(s) | 96 |
| BspQI | GCTCTTC | 1 cut(s) | 305 |
| BspT107I | GGYRCC | 1 cut(s) | 341 |
| BsrBI | CCGCTC | 3 cut(s) | 289, 316, 707 |
| BsrFI | RCCGGY | 1 cut(s) | 218 |
| BssAI | RCCGGY | 1 cut(s) | 218 |
| BssECI | CCNNGG | 5 cut(s) | 7, 48, 468, 540, 669 |
| BssNI | GRCGYC | 2 cut(s) | 233, 564 |
| BssT1I | CCWWGG | 2 cut(s) | 540, 669 |
| Bst2UI | CCWGG | 3 cut(s) | 425, 557, 653 |
| Bst4CI | ACNGT | 2 cut(s) | 122, 663 |
| Bst6I | CTCTTC | 4 cut(s) | 95, 173, 305, 671 |
| BstACI | GRCGYC | 2 cut(s) | 233, 564 |
| BstC8I | GCNNGC | 4 cut(s) | 170, 220, 709, 713 |
| BstDEI | CTNAG | 1 cut(s) | 615 |
| BstDSI | CCRYGG | 1 cut(s) | 7 |
| BstF5I | GGATG | 5 cut(s) | 75, 142, 199, 343, 440 |
| BstFNI | CGCG | 1 cut(s) | 9 |
| BstHHI | GCGC | 1 cut(s) | 465 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 295, 452, 620 |
| BstNI | CCWGG | 3 cut(s) | 425, 557, 653 |
| BstNSI | RCATGY | 1 cut(s) | 604 |
| BstSCI | CCNGG | 4 cut(s) | 423, 555, 594, 651 |
| BstSFI | CTRYAG | 2 cut(s) | 24, 92 |
| BstUI | CGCG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 7 cut(s) | 78, 184, 282, 447, 541, 615, 616 |
| BsuI | GTATCC | 2 cut(s) | 346, 659 |
| BsuRI | GGCC | 6 cut(s) | 17, 386, 393, 594, 668, 704 |
| BtgI | CCRYGG | 1 cut(s) | 7 |
| BtsCI | GGATG | 5 cut(s) | 75, 142, 199, 343, 440 |
| BtsI | GCAGTG | 3 cut(s) | 289, 359, 462 |
| BtsIMutI | CAGTG | 3 cut(s) | 289, 359, 462 |
| Cac8I | GCNNGC | 4 cut(s) | 170, 220, 709, 713 |
| CaiI | CAGNNNCTG | 1 cut(s) | 309 |
| CfoI | GCGC | 1 cut(s) | 465 |
| Cfr10I | RCCGGY | 1 cut(s) | 218 |
| Cfr13I | GGNCC | 3 cut(s) | 15, 56, 553 |
| Cfr42I | CCGCGG | 1 cut(s) | 10 |
| CseI | GACGC | 1 cut(s) | 572 |
| CsiI | ACCWGGT | 1 cut(s) | 555 |
| Csp6I | GTAC | 1 cut(s) | 342 |
| CviAII | CATG | 2 cut(s) | 346, 601 |
| CviQI | GTAC | 1 cut(s) | 342 |
| DdeI | CTNAG | 1 cut(s) | 615 |
| EaeI | YGGCCR | 3 cut(s) | 391, 592, 666 |
| Eam1104I | CTCTTC | 4 cut(s) | 95, 173, 305, 671 |
| EarI | CTCTTC | 4 cut(s) | 95, 173, 305, 671 |
| EciI | GGCGGA | 1 cut(s) | 433 |
| Eco130I | CCWWGG | 2 cut(s) | 540, 669 |
| Eco47I | GGWCC | 2 cut(s) | 56, 553 |
| Eco57I | CTGAAG | 2 cut(s) | 286, 720 |
| Eco88I | CYCGRG | 1 cut(s) | 567 |
| EcoRI | GAATTC | 1 cut(s) | 638 |
| EcoRII | CCWGG | 3 cut(s) | 423, 555, 651 |
| EcoT14I | CCWWGG | 2 cut(s) | 540, 669 |
| ErhI | CCWWGG | 2 cut(s) | 540, 669 |
| FaeI | CATG | 2 cut(s) | 349, 604 |
| FaiI | YATR | 6 cut(s) | 26, 152, 335, 347, 602, 609 |
| FaqI | GGGAC | 3 cut(s) | 69, 525, 611 |
| FatI | CATG | 2 cut(s) | 345, 600 |
| FauI | CCCGC | 5 cut(s) | 215, 282, 342, 490, 690 |
| FokI | GGATG | 5 cut(s) | 62, 149, 206, 350, 427 |
| FspBI | CTAG | 2 cut(s) | 279, 744 |
| GlaI | GCGC | 1 cut(s) | 464 |
| GsaI | CCCAGC | 1 cut(s) | 323 |
| HaeIII | GGCC | 6 cut(s) | 17, 386, 393, 594, 668, 704 |
| HapII | CCGG | 2 cut(s) | 219, 595 |
| HgaI | GACGC | 1 cut(s) | 572 |
| HhaI | GCGC | 1 cut(s) | 465 |
| Hin1I | GRCGYC | 2 cut(s) | 233, 564 |
| Hin1II | CATG | 2 cut(s) | 349, 604 |
| Hin6I | GCGC | 1 cut(s) | 463 |
| HinP1I | GCGC | 1 cut(s) | 463 |
| HincII | GTYRAC | 2 cut(s) | 214, 475 |
| HindII | GTYRAC | 2 cut(s) | 214, 475 |
| HinfI | GANTC | 2 cut(s) | 248, 513 |
| HpaII | CCGG | 2 cut(s) | 219, 595 |
| HphI | GGTGA | 6 cut(s) | 134, 241, 247, 363, 556, 634 |
| Hpy166II | GTNNAC | 5 cut(s) | 145, 214, 475, 553, 562 |
| Hpy188I | TCNGA | 4 cut(s) | 238, 469, 719, 739 |
| Hpy8I | GTNNAC | 5 cut(s) | 145, 214, 475, 553, 562 |
| HpyAV | CCTTC | 9 cut(s) | 6, 184, 193, 262, 397, 481, 502, 541, 744 |
| HpyCH4III | ACNGT | 2 cut(s) | 122, 663 |
| HpyCH4IV | ACGT | 2 cut(s) | 233, 582 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 94, 364, 604, 631 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 295, 452, 620 |
| HpyF3I | CTNAG | 1 cut(s) | 615 |
| HpySE526I | ACGT | 2 cut(s) | 233, 582 |
| Hsp92I | GRCGYC | 2 cut(s) | 233, 564 |
| Hsp92II | CATG | 2 cut(s) | 349, 604 |
| HspAI | GCGC | 1 cut(s) | 463 |
| KpnI | GGTACC | 1 cut(s) | 345 |
| KroI | GCCGGC | 1 cut(s) | 218 |
| KroNI | GCCGGC | 1 cut(s) | 220 |
| KspI | CCGCGG | 1 cut(s) | 10 |
| LguI | GCTCTTC | 1 cut(s) | 305 |
| LmnI | GCTCC | 3 cut(s) | 37, 292, 470 |
| Lsp1109I | GCAGC | 7 cut(s) | 78, 184, 282, 447, 541, 615, 616 |
| LweI | GCATC | 1 cut(s) | 315 |
| MabI | ACCWGGT | 1 cut(s) | 555 |
| MaeI | CTAG | 2 cut(s) | 279, 744 |
| MaeII | ACGT | 2 cut(s) | 233, 582 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MbiI | CCGCTC | 3 cut(s) | 289, 316, 707 |
| MboII | GAAGA | 6 cut(s) | 112, 190, 292, 517, 688, 732 |
| MluCI | AATT | 1 cut(s) | 638 |
| MlyI | GAGTC | 2 cut(s) | 242, 507 |
| MreI | CGCCGGCG | 1 cut(s) | 218 |
| MroNI | GCCGGC | 1 cut(s) | 218 |
| MslI | CAYNNNNRTG | 1 cut(s) | 50 |
| MspA1I | CMGCKG | 4 cut(s) | 9, 91, 157, 697 |
| MspI | CCGG | 2 cut(s) | 219, 595 |
| MspR9I | CCNGG | 4 cut(s) | 425, 557, 596, 653 |
| MvaI | CCWGG | 3 cut(s) | 425, 557, 653 |
| MvnI | CGCG | 1 cut(s) | 9 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 295, 452, 620 |
| NaeI | GCCGGC | 1 cut(s) | 220 |
| NciI | CCSGG | 1 cut(s) | 596 |
| NgoMIV | GCCGGC | 1 cut(s) | 218 |
| NlaIII | CATG | 2 cut(s) | 349, 604 |
| NlaIV | GGNNCC | 3 cut(s) | 39, 57, 343 |
| NmeAIII | GCCGAG | 2 cut(s) | 292, 362 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| NspI | RCATGY | 1 cut(s) | 604 |
| OliI | CACNNNNGTG | 1 cut(s) | 50 |
| PciSI | GCTCTTC | 1 cut(s) | 305 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 671 |
| PdiI | GCCGGC | 1 cut(s) | 220 |
| PflFI | GACNNNGTC | 1 cut(s) | 584 |
| PfoI | TCCNGGA | 1 cut(s) | 651 |
| PleI | GAGTC | 2 cut(s) | 242, 507 |
| PpsI | GAGTC | 2 cut(s) | 242, 507 |
| Psp6I | CCWGG | 3 cut(s) | 423, 555, 651 |
| PspFI | CCCAGC | 1 cut(s) | 319 |
| PspGI | CCWGG | 3 cut(s) | 423, 555, 651 |
| PspN4I | GGNNCC | 3 cut(s) | 39, 57, 343 |
| PspPI | GGNCC | 3 cut(s) | 15, 56, 553 |
| PstI | CTGCAG | 1 cut(s) | 96 |
| PstNI | CAGNNNCTG | 1 cut(s) | 309 |
| PsyI | GACNNNGTC | 1 cut(s) | 584 |
| PvuII | CAGCTG | 1 cut(s) | 91 |
| RsaI | GTAC | 1 cut(s) | 343 |
| RsaNI | GTAC | 1 cut(s) | 342 |
| RseI | CAYNNNNRTG | 1 cut(s) | 50 |
| SacII | CCGCGG | 1 cut(s) | 10 |
| SapI | GCTCTTC | 1 cut(s) | 305 |
| Sau96I | GGNCC | 3 cut(s) | 15, 56, 553 |
| SchI | GAGTC | 2 cut(s) | 242, 507 |
| ScrFI | CCNGG | 4 cut(s) | 425, 557, 596, 653 |
| SexAI | ACCWGGT | 1 cut(s) | 555 |
| SfaNI | GCATC | 1 cut(s) | 315 |
| SfcI | CTRYAG | 2 cut(s) | 24, 92 |
| Sfr303I | CCGCGG | 1 cut(s) | 10 |
| SgrAI | CRCCGGYG | 1 cut(s) | 218 |
| SgrBI | CCGCGG | 1 cut(s) | 10 |
| SinI | GGWCC | 2 cut(s) | 56, 553 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 50 |
| Sse9I | AATT | 1 cut(s) | 638 |
| SspMI | CTAG | 2 cut(s) | 279, 744 |
| StyD4I | CCNGG | 4 cut(s) | 423, 555, 594, 651 |
| StyI | CCWWGG | 2 cut(s) | 540, 669 |
| TaaI | ACNGT | 2 cut(s) | 122, 663 |
| TaiI | ACGT | 2 cut(s) | 236, 585 |
| TasI | AATT | 1 cut(s) | 638 |
| TauI | GCSGC | 4 cut(s) | 43, 157, 319, 707 |
| TscAI | CASTG | 3 cut(s) | 289, 366, 462 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| TseI | GCWGC | 7 cut(s) | 91, 172, 295, 460, 529, 604, 628 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspRI | CASTG | 3 cut(s) | 289, 366, 462 |
| Tth111I | GACNNNGTC | 1 cut(s) | 584 |
| VpaK11BI | GGWCC | 2 cut(s) | 56, 553 |
| XapI | RAATTY | 1 cut(s) | 638 |
| XceI | RCATGY | 1 cut(s) | 604 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 401, 547 |
| XspI | CTAG | 2 cut(s) | 279, 744 |
| ZraI | GACGTC | 1 cut(s) | 234 |