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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 7 cut(s) | 14, 201, 258, 269, 337, 344, 347 |
| AclWI | GGATC | 2 cut(s) | 34, 243 |
| AcoI | YGGCCR | 2 cut(s) | 220, 419 |
| AcuI | CTGAAG | 2 cut(s) | 45, 238 |
| AcvI | CACGTG | 1 cut(s) | 334 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 129, 171, 258 |
| AgsI | TTSAA | 1 cut(s) | 438 |
| AjnI | CCWGG | 3 cut(s) | 107, 167, 314 |
| AluBI | AGCT | 5 cut(s) | 65, 144, 177, 294, 322 |
| AluI | AGCT | 5 cut(s) | 65, 144, 177, 294, 322 |
| Alw21I | GWGCWC | 1 cut(s) | 146 |
| AlwI | GGATC | 2 cut(s) | 34, 243 |
| Ama87I | CYCGRG | 2 cut(s) | 4, 128 |
| AoxI | GGCC | 6 cut(s) | 68, 162, 184, 220, 407, 419 |
| ApeKI | GCWGC | 1 cut(s) | 93 |
| AspLEI | GCGC | 1 cut(s) | 35 |
| AspS9I | GGNCC | 3 cut(s) | 76, 120, 162 |
| AsuC2I | CCSGG | 2 cut(s) | 129, 130 |
| AsuHPI | GGTGA | 1 cut(s) | 297 |
| AvaI | CYCGRG | 2 cut(s) | 4, 128 |
| AvaII | GGWCC | 2 cut(s) | 76, 120 |
| BaeGI | GKGCMC | 1 cut(s) | 333 |
| BalI | TGGCCA | 2 cut(s) | 222, 421 |
| BanII | GRGCYC | 1 cut(s) | 146 |
| BbrPI | CACGTG | 1 cut(s) | 334 |
| Bbv12I | GWGCWC | 1 cut(s) | 146 |
| BbvCI | CCTCAGC | 1 cut(s) | 323 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BccI | CCATC | 1 cut(s) | 411 |
| BciT130I | CCWGG | 3 cut(s) | 109, 169, 316 |
| BcnI | CCSGG | 2 cut(s) | 129, 130 |
| BfaI | CTAG | 2 cut(s) | 272, 441 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 355 |
| BisI | GCNGC | 4 cut(s) | 94, 269, 344, 347 |
| BlsI | GCNGC | 4 cut(s) | 95, 270, 345, 348 |
| Bme1390I | CCNGG | 5 cut(s) | 109, 129, 130, 169, 316 |
| Bme18I | GGWCC | 2 cut(s) | 76, 120 |
| BmeT110I | CYCGRG | 2 cut(s) | 4, 128 |
| BmgT120I | GGNCC | 3 cut(s) | 76, 120, 162 |
| BmrFI | CCNGG | 5 cut(s) | 109, 129, 130, 169, 316 |
| BpmI | CTGGAG | 2 cut(s) | 151, 316 |
| Bpu10I | CCTNAGC | 2 cut(s) | 145, 323 |
| BpuMI | CCSGG | 2 cut(s) | 129, 130 |
| BsaAI | YACGTR | 1 cut(s) | 334 |
| BsaJI | CCNNGG | 6 cut(s) | 127, 128, 168, 187, 315, 350 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 129, 171, 258 |
| Bse118I | RCCGGY | 1 cut(s) | 409 |
| Bse1I | ACTGG | 1 cut(s) | 223 |
| BseBI | CCWGG | 3 cut(s) | 109, 169, 316 |
| BseDI | CCNNGG | 6 cut(s) | 127, 128, 168, 187, 315, 350 |
| BseGI | GGATG | 1 cut(s) | 209 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 129, 171, 258 |
| BseMII | CTCAG | 4 cut(s) | 159, 272, 314, 386 |
| BseNI | ACTGG | 1 cut(s) | 223 |
| BseRI | GAGGAG | 1 cut(s) | 166 |
| BseSI | GKGCMC | 1 cut(s) | 333 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BseYI | CCCAGC | 1 cut(s) | 177 |
| BshFI | GGCC | 6 cut(s) | 70, 164, 186, 222, 409, 421 |
| BsiHKAI | GWGCWC | 1 cut(s) | 146 |
| BsiHKCI | CYCGRG | 2 cut(s) | 4, 128 |
| BsiSI | CCGG | 2 cut(s) | 129, 410 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 129, 171, 258 |
| BsnI | GGCC | 6 cut(s) | 70, 164, 186, 222, 409, 421 |
| BsoBI | CYCGRG | 2 cut(s) | 4, 128 |
| Bsp1286I | GDGCHC | 2 cut(s) | 146, 333 |
| Bsp143I | GATC | 4 cut(s) | 26, 155, 248, 274 |
| Bsp19I | CCATGG | 1 cut(s) | 350 |
| BspACI | CCGC | 7 cut(s) | 14, 201, 258, 269, 337, 344, 347 |
| BspANI | GGCC | 6 cut(s) | 70, 164, 186, 222, 409, 421 |
| BspCNI | CTCAG | 4 cut(s) | 158, 273, 315, 387 |
| BspPI | GGATC | 2 cut(s) | 34, 243 |
| BsrFI | RCCGGY | 1 cut(s) | 409 |
| BsrI | ACTGG | 1 cut(s) | 223 |
| BssAI | RCCGGY | 1 cut(s) | 409 |
| BssECI | CCNNGG | 6 cut(s) | 127, 128, 168, 187, 315, 350 |
| BssMI | GATC | 4 cut(s) | 26, 155, 248, 274 |
| BssT1I | CCWWGG | 2 cut(s) | 187, 350 |
| Bst2UI | CCWGG | 3 cut(s) | 109, 169, 316 |
| Bst4CI | ACNGT | 2 cut(s) | 42, 434 |
| BstBAI | YACGTR | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 1 cut(s) | 312 |
| BstDEI | CTNAG | 4 cut(s) | 145, 281, 323, 395 |
| BstDSI | CCRYGG | 1 cut(s) | 350 |
| BstF5I | GGATG | 1 cut(s) | 209 |
| BstHHI | GCGC | 1 cut(s) | 35 |
| BstKTI | GATC | 4 cut(s) | 29, 158, 251, 277 |
| BstMBI | GATC | 4 cut(s) | 26, 155, 248, 274 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 183, 328, 343, 355 |
| BstNI | CCWGG | 3 cut(s) | 109, 169, 316 |
| BstSCI | CCNGG | 5 cut(s) | 107, 127, 128, 167, 314 |
| BstSLI | GKGCMC | 1 cut(s) | 333 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstX2I | RGATCY | 1 cut(s) | 248 |
| BstYI | RGATCY | 1 cut(s) | 248 |
| BsuRI | GGCC | 6 cut(s) | 70, 164, 186, 222, 409, 421 |
| BtgI | CCRYGG | 1 cut(s) | 350 |
| BtgZI | GCGATG | 1 cut(s) | 430 |
| BtsCI | GGATG | 1 cut(s) | 209 |
| BtsIMutI | CAGTG | 1 cut(s) | 377 |
| Cac8I | GCNNGC | 1 cut(s) | 312 |
| CfoI | GCGC | 1 cut(s) | 35 |
| Cfr10I | RCCGGY | 1 cut(s) | 409 |
| Cfr13I | GGNCC | 3 cut(s) | 76, 120, 162 |
| Cfr9I | CCCGGG | 1 cut(s) | 128 |
| CviAII | CATG | 3 cut(s) | 97, 351, 390 |
| DdeI | CTNAG | 4 cut(s) | 145, 281, 323, 395 |
| DpnI | GATC | 4 cut(s) | 28, 157, 250, 276 |
| DpnII | GATC | 4 cut(s) | 26, 155, 248, 274 |
| EaeI | YGGCCR | 2 cut(s) | 220, 419 |
| EciI | GGCGGA | 1 cut(s) | 216 |
| Ecl136II | GAGCTC | 1 cut(s) | 144 |
| Eco130I | CCWWGG | 2 cut(s) | 187, 350 |
| Eco24I | GRGCYC | 1 cut(s) | 146 |
| Eco47I | GGWCC | 2 cut(s) | 76, 120 |
| Eco53kI | GAGCTC | 1 cut(s) | 144 |
| Eco57I | CTGAAG | 2 cut(s) | 45, 238 |
| Eco72I | CACGTG | 1 cut(s) | 334 |
| Eco88I | CYCGRG | 2 cut(s) | 4, 128 |
| EcoICRI | GAGCTC | 1 cut(s) | 144 |
| EcoO109I | RGGNCCY | 1 cut(s) | 162 |
| EcoRII | CCWGG | 3 cut(s) | 107, 167, 314 |
| EcoT14I | CCWWGG | 2 cut(s) | 187, 350 |
| EcoT38I | GRGCYC | 1 cut(s) | 146 |
| ErhI | CCWWGG | 2 cut(s) | 187, 350 |
| FaeI | CATG | 3 cut(s) | 100, 354, 393 |
| FaiI | YATR | 3 cut(s) | 98, 352, 391 |
| FatI | CATG | 3 cut(s) | 96, 350, 389 |
| FauI | CCCGC | 1 cut(s) | 251 |
| Fnu4HI | GCNGC | 4 cut(s) | 94, 269, 344, 347 |
| FokI | GGATG | 1 cut(s) | 216 |
| FriOI | GRGCYC | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 4 cut(s) | 94, 269, 344, 347 |
| FspBI | CTAG | 2 cut(s) | 272, 441 |
| GlaI | GCGC | 1 cut(s) | 34 |
| GluI | GCNGC | 4 cut(s) | 94, 269, 344, 347 |
| GsaI | CCCAGC | 1 cut(s) | 181 |
| GsuI | CTGGAG | 2 cut(s) | 151, 316 |
| HaeIII | GGCC | 6 cut(s) | 70, 164, 186, 222, 409, 421 |
| HapII | CCGG | 2 cut(s) | 129, 410 |
| HhaI | GCGC | 1 cut(s) | 35 |
| Hin1II | CATG | 3 cut(s) | 100, 354, 393 |
| Hin6I | GCGC | 1 cut(s) | 33 |
| HinP1I | GCGC | 1 cut(s) | 33 |
| HincII | GTYRAC | 1 cut(s) | 48 |
| HindII | GTYRAC | 1 cut(s) | 48 |
| HinfI | GANTC | 1 cut(s) | 115 |
| HpaI | GTTAAC | 1 cut(s) | 48 |
| HpaII | CCGG | 2 cut(s) | 129, 410 |
| HphI | GGTGA | 1 cut(s) | 297 |
| Hpy166II | GTNNAC | 1 cut(s) | 48 |
| Hpy188I | TCNGA | 1 cut(s) | 120 |
| Hpy8I | GTNNAC | 1 cut(s) | 48 |
| Hpy99I | CGWCG | 2 cut(s) | 46, 217 |
| HpyAV | CCTTC | 3 cut(s) | 69, 176, 262 |
| HpyCH4III | ACNGT | 2 cut(s) | 42, 434 |
| HpyCH4IV | ACGT | 1 cut(s) | 333 |
| HpyCH4V | TGCA | 1 cut(s) | 96 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 183, 328, 343, 355 |
| HpyF3I | CTNAG | 4 cut(s) | 145, 281, 323, 395 |
| HpySE526I | ACGT | 1 cut(s) | 333 |
| Hsp92II | CATG | 3 cut(s) | 100, 354, 393 |
| HspAI | GCGC | 1 cut(s) | 33 |
| KspAI | GTTAAC | 1 cut(s) | 48 |
| Kzo9I | GATC | 4 cut(s) | 26, 155, 248, 274 |
| LmnI | GCTCC | 4 cut(s) | 141, 174, 209, 319 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| MaeI | CTAG | 2 cut(s) | 272, 441 |
| MaeII | ACGT | 1 cut(s) | 333 |
| MalI | GATC | 4 cut(s) | 28, 157, 250, 276 |
| MboI | GATC | 4 cut(s) | 26, 155, 248, 274 |
| MboII | GAAGA | 1 cut(s) | 300 |
| MflI | RGATCY | 1 cut(s) | 248 |
| MhlI | GDGCHC | 2 cut(s) | 146, 333 |
| MlsI | TGGCCA | 2 cut(s) | 222, 421 |
| MluCI | AATT | 1 cut(s) | 100 |
| MluNI | TGGCCA | 2 cut(s) | 222, 421 |
| MlyI | GAGTC | 1 cut(s) | 124 |
| MmeI | TCCRAC | 1 cut(s) | 98 |
| MnlI | CCTC | 8 cut(s) | 15, 89, 144, 175, 276, 297, 318, 390 |
| Mox20I | TGGCCA | 2 cut(s) | 222, 421 |
| MscI | TGGCCA | 2 cut(s) | 222, 421 |
| MseI | TTAA | 2 cut(s) | 47, 362 |
| Msp20I | TGGCCA | 2 cut(s) | 222, 421 |
| MspA1I | CMGCKG | 1 cut(s) | 258 |
| MspI | CCGG | 2 cut(s) | 129, 410 |
| MspR9I | CCNGG | 5 cut(s) | 109, 129, 130, 169, 316 |
| MvaI | CCWGG | 3 cut(s) | 109, 169, 316 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 183, 328, 343, 355 |
| NciI | CCSGG | 2 cut(s) | 129, 130 |
| NcoI | CCATGG | 1 cut(s) | 350 |
| NdeII | GATC | 4 cut(s) | 26, 155, 248, 274 |
| NlaIII | CATG | 3 cut(s) | 100, 354, 393 |
| NmeAIII | GCCGAG | 1 cut(s) | 46 |
| PkrI | GCNGC | 4 cut(s) | 95, 270, 345, 348 |
| PleI | GAGTC | 1 cut(s) | 123 |
| PmaCI | CACGTG | 1 cut(s) | 334 |
| PmlI | CACGTG | 1 cut(s) | 334 |
| PpsI | GAGTC | 1 cut(s) | 123 |
| Ppu21I | YACGTR | 1 cut(s) | 334 |
| Psp124BI | GAGCTC | 1 cut(s) | 146 |
| Psp6I | CCWGG | 3 cut(s) | 107, 167, 314 |
| PspCI | CACGTG | 1 cut(s) | 334 |
| PspFI | CCCAGC | 1 cut(s) | 177 |
| PspGI | CCWGG | 3 cut(s) | 107, 167, 314 |
| PspPI | GGNCC | 3 cut(s) | 76, 120, 162 |
| PsuI | RGATCY | 1 cut(s) | 248 |
| SacI | GAGCTC | 1 cut(s) | 146 |
| SaqAI | TTAA | 2 cut(s) | 47, 362 |
| SatI | GCNGC | 4 cut(s) | 94, 269, 344, 347 |
| Sau3AI | GATC | 4 cut(s) | 26, 155, 248, 274 |
| Sau96I | GGNCC | 3 cut(s) | 76, 120, 162 |
| SchI | GAGTC | 1 cut(s) | 124 |
| ScrFI | CCNGG | 5 cut(s) | 109, 129, 130, 169, 316 |
| SduI | GDGCHC | 2 cut(s) | 146, 333 |
| SetI | ASST | 9 cut(s) | 67, 81, 146, 179, 287, 296, 308, 324, 336 |
| SinI | GGWCC | 2 cut(s) | 76, 120 |
| SmaI | CCCGGG | 1 cut(s) | 130 |
| Sse9I | AATT | 1 cut(s) | 100 |
| SsiI | CCGC | 7 cut(s) | 14, 201, 258, 269, 337, 344, 347 |
| SspMI | CTAG | 2 cut(s) | 272, 441 |
| SstI | GAGCTC | 1 cut(s) | 146 |
| StyD4I | CCNGG | 5 cut(s) | 107, 127, 128, 167, 314 |
| StyI | CCWWGG | 2 cut(s) | 187, 350 |
| TaaI | ACNGT | 2 cut(s) | 42, 434 |
| TaiI | ACGT | 1 cut(s) | 336 |
| TasI | AATT | 1 cut(s) | 100 |
| TauI | GCSGC | 3 cut(s) | 271, 346, 349 |
| Tru1I | TTAA | 2 cut(s) | 47, 362 |
| Tru9I | TTAA | 2 cut(s) | 47, 362 |
| TscAI | CASTG | 1 cut(s) | 377 |
| TseI | GCWGC | 1 cut(s) | 93 |
| TspDTI | ATGAA | 1 cut(s) | 113 |
| TspMI | CCCGGG | 1 cut(s) | 128 |
| TspRI | CASTG | 1 cut(s) | 377 |
| VpaK11BI | GGWCC | 2 cut(s) | 76, 120 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 194 |
| XmaI | CCCGGG | 1 cut(s) | 128 |
| XspI | CTAG | 2 cut(s) | 272, 441 |