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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 234, 638, 761 |
| AccBSI | CCGCTC | 3 cut(s) | 79, 298, 788 |
| AccI | GTMKAC | 1 cut(s) | 162 |
| AccII | CGCG | 3 cut(s) | 47, 120, 273 |
| AclWI | GGATC | 3 cut(s) | 366, 385, 802 |
| AcoI | YGGCCR | 1 cut(s) | 738 |
| AcuI | CTGAAG | 4 cut(s) | 152, 374, 380, 599 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 124, 297, 355, 400 |
| AleI | CACNNNNGTG | 1 cut(s) | 767 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 74, 106, 125, 157 |
| AluBI | AGCT | 6 cut(s) | 196, 217, 280, 371, 464, 691 |
| AluI | AGCT | 6 cut(s) | 196, 217, 280, 371, 464, 691 |
| Alw26I | GTCTC | 1 cut(s) | 328 |
| AlwI | GGATC | 3 cut(s) | 366, 385, 802 |
| Ama87I | CYCGRG | 2 cut(s) | 110, 750 |
| AoxI | GGCC | 2 cut(s) | 591, 738 |
| ApeKI | GCWGC | 2 cut(s) | 5, 485 |
| AspS9I | GGNCC | 2 cut(s) | 301, 591 |
| AsuC2I | CCSGG | 1 cut(s) | 625 |
| AsuHPI | GGTGA | 4 cut(s) | 280, 556, 616, 781 |
| AsuII | TTCGAA | 1 cut(s) | 714 |
| AsuNHI | GCTAGC | 1 cut(s) | 217 |
| AvaI | CYCGRG | 2 cut(s) | 110, 750 |
| AvaII | GGWCC | 1 cut(s) | 301 |
| BaeGI | GKGCMC | 1 cut(s) | 643 |
| BanI | GGYRCC | 3 cut(s) | 234, 638, 761 |
| BanII | GRGCYC | 1 cut(s) | 782 |
| BauI | CACGAG | 2 cut(s) | 305, 723 |
| BbvI | GCAGC | 1 cut(s) | 472 |
| BccI | CCATC | 4 cut(s) | 122, 529, 602, 752 |
| BceAI | ACGGC | 2 cut(s) | 135, 476 |
| BclI | TGATCA | 1 cut(s) | 799 |
| BcnI | CCSGG | 1 cut(s) | 625 |
| BcoDI | GTCTC | 1 cut(s) | 328 |
| BfaI | CTAG | 4 cut(s) | 35, 189, 218, 332 |
| BfmI | CTRYAG | 1 cut(s) | 420 |
| BisI | GCNGC | 7 cut(s) | 6, 233, 411, 486, 489, 741, 811 |
| BlsI | GCNGC | 7 cut(s) | 7, 234, 412, 487, 490, 742, 812 |
| Bme1390I | CCNGG | 1 cut(s) | 625 |
| Bme18I | GGWCC | 1 cut(s) | 301 |
| BmeT110I | CYCGRG | 2 cut(s) | 110, 750 |
| BmgT120I | GGNCC | 2 cut(s) | 301, 591 |
| BmiI | GGNNCC | 6 cut(s) | 116, 236, 302, 592, 640, 763 |
| BmrFI | CCNGG | 1 cut(s) | 625 |
| BmsI | GCATC | 4 cut(s) | 127, 194, 256, 762 |
| BmtI | GCTAGC | 1 cut(s) | 221 |
| BoxI | GACNNNNGTC | 1 cut(s) | 150 |
| BpmI | CTGGAG | 1 cut(s) | 458 |
| Bpu10I | CCTNAGC | 2 cut(s) | 372, 646 |
| Bpu14I | TTCGAA | 1 cut(s) | 714 |
| BpuMI | CCSGG | 1 cut(s) | 625 |
| BsaJI | CCNNGG | 2 cut(s) | 118, 765 |
| BsaWI | WCCGGW | 1 cut(s) | 673 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 74, 104, 308, 338, 685, 715 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 124, 297, 355, 400 |
| BseDI | CCNNGG | 2 cut(s) | 118, 765 |
| BseGI | GGATG | 2 cut(s) | 133, 271 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 124, 297, 355, 400 |
| BseMII | CTCAG | 4 cut(s) | 456, 471, 624, 701 |
| BseRI | GAGGAG | 1 cut(s) | 512 |
| BseSI | GKGCMC | 1 cut(s) | 643 |
| BseXI | GCAGC | 1 cut(s) | 472 |
| BsgI | GTGCAG | 1 cut(s) | 41 |
| Bsh1236I | CGCG | 3 cut(s) | 47, 120, 273 |
| BshFI | GGCC | 2 cut(s) | 593, 740 |
| BshNI | GGYRCC | 3 cut(s) | 234, 638, 761 |
| BsiHKCI | CYCGRG | 2 cut(s) | 110, 750 |
| BsiSI | CCGG | 2 cut(s) | 624, 674 |
| BslFI | GGGAC | 4 cut(s) | 269, 314, 416, 598 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 124, 297, 355, 400 |
| BsmAI | GTCTC | 1 cut(s) | 328 |
| BsmFI | GGGAC | 4 cut(s) | 269, 314, 416, 598 |
| BsnI | GGCC | 2 cut(s) | 593, 740 |
| BsoBI | CYCGRG | 2 cut(s) | 110, 750 |
| Bsp119I | TTCGAA | 1 cut(s) | 714 |
| Bsp1286I | GDGCHC | 2 cut(s) | 643, 782 |
| Bsp143I | GATC | 4 cut(s) | 358, 390, 794, 799 |
| Bsp19I | CCATGG | 1 cut(s) | 765 |
| BspANI | GGCC | 2 cut(s) | 593, 740 |
| BspCNI | CTCAG | 4 cut(s) | 457, 472, 625, 700 |
| BspFNI | CGCG | 3 cut(s) | 47, 120, 273 |
| BspLI | GGNNCC | 6 cut(s) | 116, 236, 302, 592, 640, 763 |
| BspMAI | CTGCAG | 1 cut(s) | 424 |
| BspOI | GCTAGC | 1 cut(s) | 221 |
| BspPI | GGATC | 3 cut(s) | 366, 385, 802 |
| BspT104I | TTCGAA | 1 cut(s) | 714 |
| BspT107I | GGYRCC | 3 cut(s) | 234, 638, 761 |
| BsrBI | CCGCTC | 3 cut(s) | 79, 298, 788 |
| BssECI | CCNNGG | 2 cut(s) | 118, 765 |
| BssMI | GATC | 4 cut(s) | 358, 390, 794, 799 |
| BssSI | CACGAG | 2 cut(s) | 305, 723 |
| BssT1I | CCWWGG | 1 cut(s) | 765 |
| Bst2BI | CACGAG | 2 cut(s) | 305, 723 |
| Bst4CI | ACNGT | 1 cut(s) | 160 |
| Bst6I | CTCTTC | 2 cut(s) | 425, 464 |
| BstBI | TTCGAA | 1 cut(s) | 714 |
| BstC8I | GCNNGC | 6 cut(s) | 24, 28, 219, 271, 643, 668 |
| BstDEI | CTNAG | 7 cut(s) | 372, 378, 465, 480, 633, 646, 687 |
| BstDSI | CCRYGG | 2 cut(s) | 118, 765 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 353 |
| BstF5I | GGATG | 2 cut(s) | 133, 271 |
| BstFNI | CGCG | 3 cut(s) | 47, 120, 273 |
| BstKTI | GATC | 4 cut(s) | 361, 393, 797, 802 |
| BstMAI | GTCTC | 1 cut(s) | 328 |
| BstMBI | GATC | 4 cut(s) | 358, 390, 794, 799 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 53, 419, 548 |
| BstNSI | RCATGY | 1 cut(s) | 577 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 150 |
| BstSCI | CCNGG | 1 cut(s) | 623 |
| BstSFI | CTRYAG | 1 cut(s) | 420 |
| BstSLI | GKGCMC | 1 cut(s) | 643 |
| BstUI | CGCG | 3 cut(s) | 47, 120, 273 |
| BstV1I | GCAGC | 1 cut(s) | 472 |
| BstX2I | RGATCY | 2 cut(s) | 390, 794 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 601 |
| BstYI | RGATCY | 2 cut(s) | 390, 794 |
| BsuRI | GGCC | 2 cut(s) | 593, 740 |
| BtgI | CCRYGG | 2 cut(s) | 118, 765 |
| BtsCI | GGATG | 2 cut(s) | 133, 271 |
| Cac8I | GCNNGC | 6 cut(s) | 24, 28, 219, 271, 643, 668 |
| Cfr13I | GGNCC | 2 cut(s) | 301, 591 |
| Cfr42I | CCGCGG | 1 cut(s) | 121 |
| CseI | GACGC | 4 cut(s) | 36, 129, 600, 659 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 772, 807 |
| CviAII | CATG | 4 cut(s) | 532, 574, 736, 766 |
| DdeI | CTNAG | 7 cut(s) | 372, 378, 465, 480, 633, 646, 687 |
| DpnI | GATC | 4 cut(s) | 360, 392, 796, 801 |
| DpnII | GATC | 4 cut(s) | 358, 390, 794, 799 |
| DraI | TTTAAA | 1 cut(s) | 505 |
| EaeI | YGGCCR | 1 cut(s) | 738 |
| Eam1104I | CTCTTC | 2 cut(s) | 425, 464 |
| EarI | CTCTTC | 2 cut(s) | 425, 464 |
| Eco130I | CCWWGG | 1 cut(s) | 765 |
| Eco24I | GRGCYC | 1 cut(s) | 782 |
| Eco47I | GGWCC | 1 cut(s) | 301 |
| Eco57I | CTGAAG | 4 cut(s) | 152, 374, 380, 599 |
| Eco88I | CYCGRG | 2 cut(s) | 110, 750 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 353 |
| EcoO109I | RGGNCCY | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 1 cut(s) | 765 |
| EcoT38I | GRGCYC | 1 cut(s) | 782 |
| ErhI | CCWWGG | 1 cut(s) | 765 |
| FaeI | CATG | 4 cut(s) | 535, 577, 739, 769 |
| FaqI | GGGAC | 4 cut(s) | 269, 314, 416, 598 |
| FatI | CATG | 4 cut(s) | 531, 573, 735, 765 |
| FauI | CCCGC | 7 cut(s) | 72, 113, 278, 291, 393, 628, 650 |
| FbaI | TGATCA | 1 cut(s) | 799 |
| FblI | GTMKAC | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 7 cut(s) | 6, 233, 411, 486, 489, 741, 811 |
| FokI | GGATG | 2 cut(s) | 140, 278 |
| FriOI | GRGCYC | 1 cut(s) | 782 |
| Fsp4HI | GCNGC | 7 cut(s) | 6, 233, 411, 486, 489, 741, 811 |
| FspBI | CTAG | 4 cut(s) | 35, 189, 218, 332 |
| GluI | GCNGC | 7 cut(s) | 6, 233, 411, 486, 489, 741, 811 |
| GsuI | CTGGAG | 1 cut(s) | 458 |
| HaeIII | GGCC | 2 cut(s) | 593, 740 |
| HapII | CCGG | 2 cut(s) | 624, 674 |
| HgaI | GACGC | 4 cut(s) | 36, 129, 600, 659 |
| Hin1II | CATG | 4 cut(s) | 535, 577, 739, 769 |
| HincII | GTYRAC | 1 cut(s) | 163 |
| HindII | GTYRAC | 1 cut(s) | 163 |
| HinfI | GANTC | 5 cut(s) | 38, 257, 404, 683, 694 |
| HpaII | CCGG | 2 cut(s) | 624, 674 |
| HphI | GGTGA | 4 cut(s) | 280, 556, 616, 781 |
| Hpy166II | GTNNAC | 2 cut(s) | 163, 679 |
| Hpy188I | TCNGA | 5 cut(s) | 66, 145, 481, 634, 799 |
| Hpy188III | TCNNGA | 2 cut(s) | 35, 725 |
| Hpy8I | GTNNAC | 2 cut(s) | 163, 679 |
| HpyAV | CCTTC | 6 cut(s) | 176, 188, 349, 376, 404, 541 |
| HpyCH4III | ACNGT | 1 cut(s) | 160 |
| HpyCH4V | TGCA | 4 cut(s) | 22, 422, 515, 775 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 53, 419, 548 |
| HpyF3I | CTNAG | 7 cut(s) | 372, 378, 465, 480, 633, 646, 687 |
| Hsp92II | CATG | 4 cut(s) | 535, 577, 739, 769 |
| Ksp22I | TGATCA | 1 cut(s) | 799 |
| KspI | CCGCGG | 1 cut(s) | 121 |
| Kzo9I | GATC | 4 cut(s) | 358, 390, 794, 799 |
| LmnI | GCTCC | 1 cut(s) | 193 |
| Lsp1109I | GCAGC | 1 cut(s) | 472 |
| LweI | GCATC | 4 cut(s) | 127, 194, 256, 762 |
| MaeI | CTAG | 4 cut(s) | 35, 189, 218, 332 |
| MaeIII | GTNAC | 1 cut(s) | 286 |
| MalI | GATC | 4 cut(s) | 360, 392, 796, 801 |
| MbiI | CCGCTC | 3 cut(s) | 79, 298, 788 |
| MboI | GATC | 4 cut(s) | 358, 390, 794, 799 |
| MboII | GAAGA | 2 cut(s) | 442, 481 |
| MflI | RGATCY | 2 cut(s) | 390, 794 |
| MhlI | GDGCHC | 2 cut(s) | 643, 782 |
| MluCI | AATT | 1 cut(s) | 509 |
| MlyI | GAGTC | 4 cut(s) | 32, 251, 398, 688 |
| MmeI | TCCRAC | 3 cut(s) | 105, 168, 179 |
| MseI | TTAA | 2 cut(s) | 228, 504 |
| MslI | CAYNNNNRTG | 2 cut(s) | 767, 770 |
| MspA1I | CMGCKG | 3 cut(s) | 120, 400, 691 |
| MspI | CCGG | 2 cut(s) | 624, 674 |
| MspR9I | CCNGG | 1 cut(s) | 625 |
| MssI | GTTTAAAC | 1 cut(s) | 505 |
| MvnI | CGCG | 3 cut(s) | 47, 120, 273 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 53, 419, 548 |
| NciI | CCSGG | 1 cut(s) | 625 |
| NcoI | CCATGG | 1 cut(s) | 765 |
| NdeII | GATC | 4 cut(s) | 358, 390, 794, 799 |
| NheI | GCTAGC | 1 cut(s) | 217 |
| NlaIII | CATG | 4 cut(s) | 535, 577, 739, 769 |
| NlaIV | GGNNCC | 6 cut(s) | 116, 236, 302, 592, 640, 763 |
| NmeAIII | GCCGAG | 1 cut(s) | 433 |
| NmuCI | GTSAC | 1 cut(s) | 286 |
| NspI | RCATGY | 1 cut(s) | 577 |
| NspV | TTCGAA | 1 cut(s) | 714 |
| OliI | CACNNNNGTG | 1 cut(s) | 767 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 141 |
| PfeI | GAWTC | 1 cut(s) | 683 |
| PflFI | GACNNNGTC | 1 cut(s) | 320 |
| PkrI | GCNGC | 7 cut(s) | 7, 234, 412, 487, 490, 742, 812 |
| PleI | GAGTC | 4 cut(s) | 32, 251, 398, 688 |
| PmeI | GTTTAAAC | 1 cut(s) | 505 |
| PpsI | GAGTC | 4 cut(s) | 32, 251, 398, 688 |
| PpuMI | RGGWCCY | 1 cut(s) | 301 |
| PshAI | GACNNNNGTC | 1 cut(s) | 150 |
| Psp5II | RGGWCCY | 1 cut(s) | 301 |
| PspN4I | GGNNCC | 6 cut(s) | 116, 236, 302, 592, 640, 763 |
| PspPI | GGNCC | 2 cut(s) | 301, 591 |
| PspPPI | RGGWCCY | 1 cut(s) | 301 |
| PstI | CTGCAG | 1 cut(s) | 424 |
| PsuI | RGATCY | 2 cut(s) | 390, 794 |
| PsyI | GACNNNGTC | 1 cut(s) | 320 |
| PvuII | CAGCTG | 1 cut(s) | 691 |
| RseI | CAYNNNNRTG | 2 cut(s) | 767, 770 |
| SacII | CCGCGG | 1 cut(s) | 121 |
| SalI | GTCGAC | 1 cut(s) | 161 |
| SaqAI | TTAA | 2 cut(s) | 228, 504 |
| SatI | GCNGC | 7 cut(s) | 6, 233, 411, 486, 489, 741, 811 |
| Sau3AI | GATC | 4 cut(s) | 358, 390, 794, 799 |
| Sau96I | GGNCC | 2 cut(s) | 301, 591 |
| SchI | GAGTC | 4 cut(s) | 32, 251, 398, 688 |
| ScrFI | CCNGG | 1 cut(s) | 625 |
| SduI | GDGCHC | 2 cut(s) | 643, 782 |
| SfaNI | GCATC | 4 cut(s) | 127, 194, 256, 762 |
| SfcI | CTRYAG | 1 cut(s) | 420 |
| Sfr303I | CCGCGG | 1 cut(s) | 121 |
| SfuI | TTCGAA | 1 cut(s) | 714 |
| SgrBI | CCGCGG | 1 cut(s) | 121 |
| SinI | GGWCC | 1 cut(s) | 301 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 767, 770 |
| Sse9I | AATT | 1 cut(s) | 509 |
| SspMI | CTAG | 4 cut(s) | 35, 189, 218, 332 |
| StyD4I | CCNGG | 1 cut(s) | 623 |
| StyI | CCWWGG | 1 cut(s) | 765 |
| TaaI | ACNGT | 1 cut(s) | 160 |
| TaqI | TCGA | 3 cut(s) | 162, 597, 714 |
| TasI | AATT | 1 cut(s) | 509 |
| TauI | GCSGC | 5 cut(s) | 235, 413, 491, 743, 813 |
| TfiI | GAWTC | 1 cut(s) | 683 |
| Tru1I | TTAA | 2 cut(s) | 228, 504 |
| Tru9I | TTAA | 2 cut(s) | 228, 504 |
| TseFI | GTSAC | 1 cut(s) | 286 |
| TseI | GCWGC | 2 cut(s) | 5, 485 |
| Tsp45I | GTSAC | 1 cut(s) | 286 |
| TspDTI | ATGAA | 2 cut(s) | 443, 724 |
| Tth111I | GACNNNGTC | 1 cut(s) | 320 |
| VpaK11BI | GGWCC | 1 cut(s) | 301 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 353 |
| XbaI | TCTAGA | 1 cut(s) | 34 |
| XceI | RCATGY | 1 cut(s) | 577 |
| XmiI | GTMKAC | 1 cut(s) | 162 |
| XspI | CTAG | 4 cut(s) | 35, 189, 218, 332 |