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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 135 |
| AccBSI | CCGCTC | 1 cut(s) | 133 |
| AccII | CGCG | 1 cut(s) | 174 |
| AciI | CCGC | 3 cut(s) | 133, 149, 174 |
| AclWI | GGATC | 2 cut(s) | 70, 267 |
| AcuI | CTGAAG | 1 cut(s) | 86 |
| AcyI | GRCGYC | 1 cut(s) | 136 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 49, 53, 145 |
| AluBI | AGCT | 5 cut(s) | 97, 118, 181, 232, 248 |
| AluI | AGCT | 5 cut(s) | 97, 118, 181, 232, 248 |
| Alw26I | GTCTC | 1 cut(s) | 89 |
| AlwI | GGATC | 2 cut(s) | 70, 267 |
| AoxI | GGCC | 1 cut(s) | 105 |
| ApeKI | GCWGC | 2 cut(s) | 13, 32 |
| AspLEI | GCGC | 1 cut(s) | 138 |
| AspS9I | GGNCC | 1 cut(s) | 202 |
| AvaII | GGWCC | 1 cut(s) | 202 |
| BanI | GGYRCC | 1 cut(s) | 135 |
| BauI | CACGAG | 1 cut(s) | 17 |
| BbvI | GCAGC | 1 cut(s) | 19 |
| BceAI | ACGGC | 1 cut(s) | 176 |
| BcoDI | GTCTC | 1 cut(s) | 89 |
| BfaI | CTAG | 1 cut(s) | 233 |
| BfoI | RGCGCY | 1 cut(s) | 139 |
| BisI | GCNGC | 4 cut(s) | 14, 33, 134, 175 |
| BlsI | GCNGC | 4 cut(s) | 15, 34, 135, 176 |
| Bme18I | GGWCC | 1 cut(s) | 202 |
| BmgT120I | GGNCC | 1 cut(s) | 202 |
| BmiI | GGNNCC | 1 cut(s) | 137 |
| BmsI | GCATC | 3 cut(s) | 44, 67, 157 |
| BpmI | CTGGAG | 1 cut(s) | 71 |
| Bpu10I | CCTNAGC | 1 cut(s) | 98 |
| BsaHI | GRCGYC | 1 cut(s) | 136 |
| BsaI | GGTCTC | 1 cut(s) | 89 |
| BsaJI | CCNNGG | 4 cut(s) | 47, 79, 144, 162 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 49, 53, 145 |
| Bse1I | ACTGG | 1 cut(s) | 88 |
| BseDI | CCNNGG | 4 cut(s) | 47, 79, 144, 162 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 49, 53, 145 |
| BseMII | CTCAG | 2 cut(s) | 173, 242 |
| BseNI | ACTGG | 1 cut(s) | 88 |
| BseXI | GCAGC | 1 cut(s) | 19 |
| Bsh1236I | CGCG | 1 cut(s) | 174 |
| BshFI | GGCC | 1 cut(s) | 107 |
| BshNI | GGYRCC | 1 cut(s) | 135 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 49, 53, 145 |
| BsmAI | GTCTC | 1 cut(s) | 89 |
| BsnI | GGCC | 1 cut(s) | 107 |
| Bso31I | GGTCTC | 1 cut(s) | 89 |
| Bsp143I | GATC | 2 cut(s) | 75, 259 |
| BspACI | CCGC | 3 cut(s) | 133, 149, 174 |
| BspANI | GGCC | 1 cut(s) | 107 |
| BspCNI | CTCAG | 2 cut(s) | 174, 241 |
| BspFNI | CGCG | 1 cut(s) | 174 |
| BspLI | GGNNCC | 1 cut(s) | 137 |
| BspPI | GGATC | 2 cut(s) | 70, 267 |
| BspT107I | GGYRCC | 1 cut(s) | 135 |
| BspTNI | GGTCTC | 1 cut(s) | 89 |
| BsrBI | CCGCTC | 1 cut(s) | 133 |
| BsrI | ACTGG | 1 cut(s) | 88 |
| BssECI | CCNNGG | 4 cut(s) | 47, 79, 144, 162 |
| BssMI | GATC | 2 cut(s) | 75, 259 |
| BssNI | GRCGYC | 1 cut(s) | 136 |
| BssSI | CACGAG | 1 cut(s) | 17 |
| BssT1I | CCWWGG | 4 cut(s) | 47, 79, 144, 162 |
| Bst2BI | CACGAG | 1 cut(s) | 17 |
| BstACI | GRCGYC | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 3 cut(s) | 120, 172, 179 |
| BstDEI | CTNAG | 3 cut(s) | 98, 182, 228 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 143 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstFNI | CGCG | 1 cut(s) | 174 |
| BstH2I | RGCGCY | 1 cut(s) | 139 |
| BstHHI | GCGC | 1 cut(s) | 138 |
| BstKTI | GATC | 2 cut(s) | 78, 262 |
| BstMAI | GTCTC | 1 cut(s) | 89 |
| BstMBI | GATC | 2 cut(s) | 75, 259 |
| BstUI | CGCG | 1 cut(s) | 174 |
| BstV1I | GCAGC | 1 cut(s) | 19 |
| BstX2I | RGATCY | 1 cut(s) | 75 |
| BstYI | RGATCY | 1 cut(s) | 75 |
| BsuRI | GGCC | 1 cut(s) | 107 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| BtsIMutI | CAGTG | 1 cut(s) | 95 |
| Cac8I | GCNNGC | 3 cut(s) | 120, 172, 179 |
| CfoI | GCGC | 1 cut(s) | 138 |
| Cfr13I | GGNCC | 1 cut(s) | 202 |
| CviAII | CATG | 1 cut(s) | 221 |
| CviJI | RGCY | 8 cut(s) | 13, 46, 97, 107, 118, 181, 232, 248 |
| CviKI_1 | RGCY | 8 cut(s) | 13, 46, 97, 107, 118, 181, 232, 248 |
| DdeI | CTNAG | 3 cut(s) | 98, 182, 228 |
| DinI | GGCGCC | 1 cut(s) | 137 |
| DpnI | GATC | 2 cut(s) | 77, 261 |
| DpnII | GATC | 2 cut(s) | 75, 259 |
| EciI | GGCGGA | 1 cut(s) | 164 |
| Eco130I | CCWWGG | 4 cut(s) | 47, 79, 144, 162 |
| Eco31I | GGTCTC | 1 cut(s) | 89 |
| Eco47I | GGWCC | 1 cut(s) | 202 |
| Eco57I | CTGAAG | 1 cut(s) | 86 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 143 |
| EcoO109I | RGGNCCY | 1 cut(s) | 202 |
| EcoT14I | CCWWGG | 4 cut(s) | 47, 79, 144, 162 |
| EgeI | GGCGCC | 1 cut(s) | 137 |
| EheI | GGCGCC | 1 cut(s) | 137 |
| ErhI | CCWWGG | 4 cut(s) | 47, 79, 144, 162 |
| FaeI | CATG | 1 cut(s) | 224 |
| FaiI | YATR | 2 cut(s) | 222, 245 |
| FatI | CATG | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 4 cut(s) | 14, 33, 134, 175 |
| FokI | GGATG | 1 cut(s) | 179 |
| Fsp4HI | GCNGC | 4 cut(s) | 14, 33, 134, 175 |
| FspBI | CTAG | 1 cut(s) | 233 |
| GlaI | GCGC | 1 cut(s) | 137 |
| GluI | GCNGC | 4 cut(s) | 14, 33, 134, 175 |
| GsuI | CTGGAG | 1 cut(s) | 71 |
| HaeII | RGCGCY | 1 cut(s) | 139 |
| HaeIII | GGCC | 1 cut(s) | 107 |
| HhaI | GCGC | 1 cut(s) | 138 |
| Hin1I | GRCGYC | 1 cut(s) | 136 |
| Hin1II | CATG | 1 cut(s) | 224 |
| Hin6I | GCGC | 1 cut(s) | 136 |
| HinP1I | GCGC | 1 cut(s) | 136 |
| HpyAV | CCTTC | 2 cut(s) | 61, 250 |
| HpyCH4V | TGCA | 2 cut(s) | 16, 35 |
| HpyF3I | CTNAG | 3 cut(s) | 98, 182, 228 |
| Hsp92I | GRCGYC | 1 cut(s) | 136 |
| Hsp92II | CATG | 1 cut(s) | 224 |
| HspAI | GCGC | 1 cut(s) | 136 |
| KasI | GGCGCC | 1 cut(s) | 135 |
| Kzo9I | GATC | 2 cut(s) | 75, 259 |
| LmnI | GCTCC | 1 cut(s) | 94 |
| LpnPI | CCDG | 5 cut(s) | 56, 101, 104, 152, 185 |
| Lsp1109I | GCAGC | 1 cut(s) | 19 |
| LweI | GCATC | 3 cut(s) | 44, 67, 157 |
| MaeI | CTAG | 1 cut(s) | 233 |
| MaeIII | GTNAC | 1 cut(s) | 155 |
| MalI | GATC | 2 cut(s) | 77, 261 |
| MbiI | CCGCTC | 1 cut(s) | 133 |
| MboI | GATC | 2 cut(s) | 75, 259 |
| MboII | GAAGA | 1 cut(s) | 85 |
| MflI | RGATCY | 1 cut(s) | 75 |
| Mly113I | GGCGCC | 1 cut(s) | 136 |
| MnlI | CCTC | 2 cut(s) | 97, 215 |
| MvnI | CGCG | 1 cut(s) | 174 |
| NarI | GGCGCC | 1 cut(s) | 136 |
| NdeII | GATC | 2 cut(s) | 75, 259 |
| NlaIII | CATG | 1 cut(s) | 224 |
| NlaIV | GGNNCC | 1 cut(s) | 137 |
| NmuCI | GTSAC | 1 cut(s) | 155 |
| PkrI | GCNGC | 4 cut(s) | 15, 34, 135, 176 |
| PluTI | GGCGCC | 1 cut(s) | 139 |
| PpuMI | RGGWCCY | 1 cut(s) | 202 |
| Psp5II | RGGWCCY | 1 cut(s) | 202 |
| PspN4I | GGNNCC | 1 cut(s) | 137 |
| PspPI | GGNCC | 1 cut(s) | 202 |
| PspPPI | RGGWCCY | 1 cut(s) | 202 |
| PsuI | RGATCY | 1 cut(s) | 75 |
| SatI | GCNGC | 4 cut(s) | 14, 33, 134, 175 |
| Sau3AI | GATC | 2 cut(s) | 75, 259 |
| Sau96I | GGNCC | 1 cut(s) | 202 |
| SetI | ASST | 7 cut(s) | 85, 99, 120, 183, 207, 234, 250 |
| SfaNI | GCATC | 3 cut(s) | 44, 67, 157 |
| SfoI | GGCGCC | 1 cut(s) | 137 |
| SinI | GGWCC | 1 cut(s) | 202 |
| SsiI | CCGC | 3 cut(s) | 133, 149, 174 |
| SspDI | GGCGCC | 1 cut(s) | 135 |
| SspMI | CTAG | 1 cut(s) | 233 |
| StyI | CCWWGG | 4 cut(s) | 47, 79, 144, 162 |
| TaqI | TCGA | 1 cut(s) | 207 |
| TauI | GCSGC | 2 cut(s) | 136, 177 |
| TscAI | CASTG | 1 cut(s) | 95 |
| TseFI | GTSAC | 1 cut(s) | 155 |
| TseI | GCWGC | 2 cut(s) | 13, 32 |
| Tsp45I | GTSAC | 1 cut(s) | 155 |
| TspGWI | ACGGA | 1 cut(s) | 226 |
| TspRI | CASTG | 1 cut(s) | 95 |
| VpaK11BI | GGWCC | 1 cut(s) | 202 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 143 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 50, 115 |
| XspI | CTAG | 1 cut(s) | 233 |