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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 403 |
| AccB1I | GGYRCC | 4 cut(s) | 93, 110, 249, 445 |
| AccII | CGCG | 2 cut(s) | 235, 505 |
| AclWI | GGATC | 2 cut(s) | 316, 329 |
| AcoI | YGGCCR | 1 cut(s) | 460 |
| AcyI | GRCGYC | 3 cut(s) | 71, 111, 353 |
| AfaI | GTAC | 1 cut(s) | 502 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 30, 132, 168, 222, 297, 465 |
| AflIII | ACRYGT | 1 cut(s) | 497 |
| AjiI | CACGTC | 1 cut(s) | 498 |
| AleI | CACNNNNGTG | 1 cut(s) | 330 |
| Alw21I | GWGCWC | 1 cut(s) | 340 |
| Alw26I | GTCTC | 2 cut(s) | 39, 389 |
| AlwI | GGATC | 2 cut(s) | 316, 329 |
| Ama87I | CYCGRG | 2 cut(s) | 10, 42 |
| AoxI | GGCC | 6 cut(s) | 14, 21, 151, 159, 409, 460 |
| AspLEI | GCGC | 2 cut(s) | 56, 113 |
| AsuC2I | CCSGG | 2 cut(s) | 67, 413 |
| AsuHPI | GGTGA | 1 cut(s) | 95 |
| AvaI | CYCGRG | 2 cut(s) | 10, 42 |
| AvaII | GGWCC | 5 cut(s) | 39, 141, 178, 269, 405 |
| AxyI | CCTNAGG | 1 cut(s) | 441 |
| BaeGI | GKGCMC | 2 cut(s) | 216, 450 |
| BamHI | GGATCC | 1 cut(s) | 321 |
| BanI | GGYRCC | 4 cut(s) | 93, 110, 249, 445 |
| Bbv12I | GWGCWC | 1 cut(s) | 340 |
| BccI | CCATC | 1 cut(s) | 362 |
| BceAI | ACGGC | 1 cut(s) | 138 |
| BcnI | CCSGG | 2 cut(s) | 67, 413 |
| BcoDI | GTCTC | 2 cut(s) | 39, 389 |
| BfoI | RGCGCY | 2 cut(s) | 57, 114 |
| BisI | GCNGC | 9 cut(s) | 21, 92, 162, 186, 197, 253, 256, 281, 291 |
| BlsI | GCNGC | 9 cut(s) | 22, 93, 163, 187, 198, 254, 257, 282, 292 |
| Bme1390I | CCNGG | 2 cut(s) | 67, 413 |
| Bme18I | GGWCC | 5 cut(s) | 39, 141, 178, 269, 405 |
| BmeT110I | CYCGRG | 2 cut(s) | 10, 42 |
| BmgBI | CACGTC | 1 cut(s) | 498 |
| BmrFI | CCNGG | 2 cut(s) | 67, 413 |
| BpuMI | CCSGG | 2 cut(s) | 67, 413 |
| BsaHI | GRCGYC | 3 cut(s) | 71, 111, 353 |
| BsaI | GGTCTC | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 5 cut(s) | 9, 75, 106, 154, 450 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 30, 132, 168, 222, 297, 465 |
| Bse118I | RCCGGY | 5 cut(s) | 16, 50, 164, 222, 458 |
| Bse21I | CCTNAGG | 1 cut(s) | 441 |
| BseDI | CCNNGG | 5 cut(s) | 9, 75, 106, 154, 450 |
| BseGI | GGATG | 2 cut(s) | 62, 373 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 30, 132, 168, 222, 297, 465 |
| BseRI | GAGGAG | 2 cut(s) | 389, 407 |
| BseSI | GKGCMC | 2 cut(s) | 216, 450 |
| BseX3I | CGGCCG | 1 cut(s) | 460 |
| Bsh1236I | CGCG | 2 cut(s) | 235, 505 |
| Bsh1285I | CGRYCG | 3 cut(s) | 35, 463, 517 |
| BshFI | GGCC | 6 cut(s) | 16, 23, 153, 161, 411, 462 |
| BshNI | GGYRCC | 4 cut(s) | 93, 110, 249, 445 |
| BsiEI | CGRYCG | 3 cut(s) | 35, 463, 517 |
| BsiHKAI | GWGCWC | 1 cut(s) | 340 |
| BsiHKCI | CYCGRG | 2 cut(s) | 10, 42 |
| BslFI | GGGAC | 2 cut(s) | 82, 164 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 30, 132, 168, 222, 297, 465 |
| BsmAI | GTCTC | 2 cut(s) | 39, 389 |
| BsmFI | GGGAC | 2 cut(s) | 82, 164 |
| BsnI | GGCC | 6 cut(s) | 16, 23, 153, 161, 411, 462 |
| Bso31I | GGTCTC | 1 cut(s) | 389 |
| BsoBI | CYCGRG | 2 cut(s) | 10, 42 |
| Bsp1286I | GDGCHC | 3 cut(s) | 216, 340, 450 |
| Bsp143I | GATC | 1 cut(s) | 321 |
| Bsp68I | TCGCGA | 1 cut(s) | 235 |
| BspANI | GGCC | 6 cut(s) | 16, 23, 153, 161, 411, 462 |
| BspFNI | CGCG | 2 cut(s) | 235, 505 |
| BspPI | GGATC | 2 cut(s) | 316, 329 |
| BspT107I | GGYRCC | 4 cut(s) | 93, 110, 249, 445 |
| BspTNI | GGTCTC | 1 cut(s) | 389 |
| BsrFI | RCCGGY | 5 cut(s) | 16, 50, 164, 222, 458 |
| BssAI | RCCGGY | 5 cut(s) | 16, 50, 164, 222, 458 |
| BssECI | CCNNGG | 5 cut(s) | 9, 75, 106, 154, 450 |
| BssMI | GATC | 1 cut(s) | 321 |
| BssNI | GRCGYC | 3 cut(s) | 71, 111, 353 |
| BssT1I | CCWWGG | 1 cut(s) | 106 |
| Bst4CI | ACNGT | 3 cut(s) | 33, 119, 273 |
| BstACI | GRCGYC | 3 cut(s) | 71, 111, 353 |
| BstC8I | GCNNGC | 8 cut(s) | 18, 25, 166, 216, 316, 437, 460, 473 |
| BstDEI | CTNAG | 2 cut(s) | 57, 441 |
| BstDSI | CCRYGG | 3 cut(s) | 75, 154, 450 |
| BstF5I | GGATG | 2 cut(s) | 62, 373 |
| BstFNI | CGCG | 2 cut(s) | 235, 505 |
| BstH2I | RGCGCY | 2 cut(s) | 57, 114 |
| BstHHI | GCGC | 2 cut(s) | 56, 113 |
| BstKTI | GATC | 1 cut(s) | 324 |
| BstMAI | GTCTC | 2 cut(s) | 39, 389 |
| BstMBI | GATC | 1 cut(s) | 321 |
| BstMCI | CGRYCG | 3 cut(s) | 35, 463, 517 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 79, 88, 232, 422, 445, 468 |
| BstSCI | CCNGG | 2 cut(s) | 65, 411 |
| BstSLI | GKGCMC | 2 cut(s) | 216, 450 |
| BstUI | CGCG | 2 cut(s) | 235, 505 |
| BstX2I | RGATCY | 1 cut(s) | 321 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 332 |
| BstYI | RGATCY | 1 cut(s) | 321 |
| BstZI | CGGCCG | 1 cut(s) | 460 |
| Bsu36I | CCTNAGG | 1 cut(s) | 441 |
| BsuRI | GGCC | 6 cut(s) | 16, 23, 153, 161, 411, 462 |
| BtgI | CCRYGG | 3 cut(s) | 75, 154, 450 |
| BtrI | CACGTC | 1 cut(s) | 498 |
| BtsCI | GGATG | 2 cut(s) | 62, 373 |
| BtuMI | TCGCGA | 1 cut(s) | 235 |
| Cac8I | GCNNGC | 8 cut(s) | 18, 25, 166, 216, 316, 437, 460, 473 |
| CfoI | GCGC | 2 cut(s) | 56, 113 |
| Cfr10I | RCCGGY | 5 cut(s) | 16, 50, 164, 222, 458 |
| CseI | GACGC | 2 cut(s) | 79, 361 |
| Csp6I | GTAC | 1 cut(s) | 501 |
| CviAII | CATG | 2 cut(s) | 88, 522 |
| CviQI | GTAC | 1 cut(s) | 501 |
| DdeI | CTNAG | 2 cut(s) | 57, 441 |
| DinI | GGCGCC | 1 cut(s) | 112 |
| DpnI | GATC | 1 cut(s) | 323 |
| DpnII | GATC | 1 cut(s) | 321 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 403 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 403 |
| EaeI | YGGCCR | 1 cut(s) | 460 |
| EagI | CGGCCG | 1 cut(s) | 460 |
| EclXI | CGGCCG | 1 cut(s) | 460 |
| Eco130I | CCWWGG | 1 cut(s) | 106 |
| Eco31I | GGTCTC | 1 cut(s) | 389 |
| Eco47I | GGWCC | 5 cut(s) | 39, 141, 178, 269, 405 |
| Eco52I | CGGCCG | 1 cut(s) | 460 |
| Eco81I | CCTNAGG | 1 cut(s) | 441 |
| Eco88I | CYCGRG | 2 cut(s) | 10, 42 |
| EcoO109I | RGGNCCY | 1 cut(s) | 178 |
| EcoT14I | CCWWGG | 1 cut(s) | 106 |
| EgeI | GGCGCC | 1 cut(s) | 112 |
| EheI | GGCGCC | 1 cut(s) | 112 |
| ErhI | CCWWGG | 1 cut(s) | 106 |
| FaeI | CATG | 2 cut(s) | 91, 525 |
| FaiI | YATR | 5 cut(s) | 6, 29, 89, 194, 523 |
| FaqI | GGGAC | 2 cut(s) | 82, 164 |
| FatI | CATG | 2 cut(s) | 87, 521 |
| FauI | CCCGC | 6 cut(s) | 32, 130, 161, 190, 223, 323 |
| Fnu4HI | GCNGC | 9 cut(s) | 21, 92, 162, 186, 197, 253, 256, 281, 291 |
| FokI | GGATG | 2 cut(s) | 49, 380 |
| Fsp4HI | GCNGC | 9 cut(s) | 21, 92, 162, 186, 197, 253, 256, 281, 291 |
| GlaI | GCGC | 2 cut(s) | 55, 112 |
| GluI | GCNGC | 9 cut(s) | 21, 92, 162, 186, 197, 253, 256, 281, 291 |
| HaeII | RGCGCY | 2 cut(s) | 57, 114 |
| HaeIII | GGCC | 6 cut(s) | 16, 23, 153, 161, 411, 462 |
| HgaI | GACGC | 2 cut(s) | 79, 361 |
| HhaI | GCGC | 2 cut(s) | 56, 113 |
| Hin1I | GRCGYC | 3 cut(s) | 71, 111, 353 |
| Hin1II | CATG | 2 cut(s) | 91, 525 |
| Hin6I | GCGC | 2 cut(s) | 54, 111 |
| HinP1I | GCGC | 2 cut(s) | 54, 111 |
| HinfI | GANTC | 1 cut(s) | 487 |
| HphI | GGTGA | 1 cut(s) | 95 |
| Hpy166II | GTNNAC | 2 cut(s) | 39, 501 |
| Hpy188I | TCNGA | 1 cut(s) | 367 |
| Hpy188III | TCNNGA | 2 cut(s) | 234, 512 |
| Hpy8I | GTNNAC | 2 cut(s) | 39, 501 |
| Hpy99I | CGWCG | 4 cut(s) | 119, 131, 355, 392 |
| HpyAV | CCTTC | 2 cut(s) | 231, 290 |
| HpyCH4III | ACNGT | 3 cut(s) | 33, 119, 273 |
| HpyCH4IV | ACGT | 1 cut(s) | 497 |
| HpyCH4V | TGCA | 1 cut(s) | 471 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 79, 88, 232, 422, 445, 468 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 441 |
| HpySE526I | ACGT | 1 cut(s) | 497 |
| Hsp92I | GRCGYC | 3 cut(s) | 71, 111, 353 |
| Hsp92II | CATG | 2 cut(s) | 91, 525 |
| HspAI | GCGC | 2 cut(s) | 54, 111 |
| KasI | GGCGCC | 1 cut(s) | 110 |
| KroI | GCCGGC | 3 cut(s) | 16, 164, 458 |
| KroNI | GCCGGC | 3 cut(s) | 18, 166, 460 |
| Kzo9I | GATC | 1 cut(s) | 321 |
| LmnI | GCTCC | 1 cut(s) | 343 |
| MaeII | ACGT | 1 cut(s) | 497 |
| MalI | GATC | 1 cut(s) | 323 |
| MboI | GATC | 1 cut(s) | 321 |
| MflI | RGATCY | 1 cut(s) | 321 |
| MhlI | GDGCHC | 3 cut(s) | 216, 340, 450 |
| Mly113I | GGCGCC | 1 cut(s) | 111 |
| MlyI | GAGTC | 1 cut(s) | 481 |
| MreI | CGCCGGCG | 1 cut(s) | 164 |
| MroNI | GCCGGC | 3 cut(s) | 16, 164, 458 |
| MslI | CAYNNNNRTG | 1 cut(s) | 330 |
| MspR9I | CCNGG | 2 cut(s) | 67, 413 |
| MvnI | CGCG | 2 cut(s) | 235, 505 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 79, 88, 232, 422, 445, 468 |
| NaeI | GCCGGC | 3 cut(s) | 18, 166, 460 |
| NarI | GGCGCC | 1 cut(s) | 111 |
| NciI | CCSGG | 2 cut(s) | 67, 413 |
| NdeII | GATC | 1 cut(s) | 321 |
| NgoMIV | GCCGGC | 3 cut(s) | 16, 164, 458 |
| NlaIII | CATG | 2 cut(s) | 91, 525 |
| NruI | TCGCGA | 1 cut(s) | 235 |
| OliI | CACNNNNGTG | 1 cut(s) | 330 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 123 |
| PdiI | GCCGGC | 3 cut(s) | 18, 166, 460 |
| PfoI | TCCNGGA | 1 cut(s) | 65 |
| PkrI | GCNGC | 9 cut(s) | 22, 93, 163, 187, 198, 254, 257, 282, 292 |
| PleI | GAGTC | 1 cut(s) | 481 |
| PluTI | GGCGCC | 1 cut(s) | 114 |
| PpsI | GAGTC | 1 cut(s) | 481 |
| PpuMI | RGGWCCY | 1 cut(s) | 178 |
| Psp5II | RGGWCCY | 1 cut(s) | 178 |
| PspPPI | RGGWCCY | 1 cut(s) | 178 |
| PsuI | RGATCY | 1 cut(s) | 321 |
| RruI | TCGCGA | 1 cut(s) | 235 |
| RsaI | GTAC | 1 cut(s) | 502 |
| RsaNI | GTAC | 1 cut(s) | 501 |
| RseI | CAYNNNNRTG | 1 cut(s) | 330 |
| SatI | GCNGC | 9 cut(s) | 21, 92, 162, 186, 197, 253, 256, 281, 291 |
| Sau3AI | GATC | 1 cut(s) | 321 |
| SchI | GAGTC | 1 cut(s) | 481 |
| ScrFI | CCNGG | 2 cut(s) | 67, 413 |
| SduI | GDGCHC | 3 cut(s) | 216, 340, 450 |
| SetI | ASST | 5 cut(s) | 108, 180, 447, 470, 500 |
| SfoI | GGCGCC | 1 cut(s) | 112 |
| SgrAI | CRCCGGYG | 2 cut(s) | 50, 164 |
| SinI | GGWCC | 5 cut(s) | 39, 141, 178, 269, 405 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 330 |
| SspDI | GGCGCC | 1 cut(s) | 110 |
| StyD4I | CCNGG | 2 cut(s) | 65, 411 |
| StyI | CCWWGG | 1 cut(s) | 106 |
| TaaI | ACNGT | 3 cut(s) | 33, 119, 273 |
| TaiI | ACGT | 1 cut(s) | 500 |
| TaqI | TCGA | 2 cut(s) | 286, 303 |
| TauI | GCSGC | 9 cut(s) | 23, 94, 164, 188, 199, 255, 258, 283, 293 |
| VpaK11BI | GGWCC | 5 cut(s) | 39, 141, 178, 269, 405 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 104 |