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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 100 |
| Acc36I | ACCTGC | 1 cut(s) | 100 |
| Acc65I | GGTACC | 1 cut(s) | 233 |
| AccB1I | GGYRCC | 5 cut(s) | 23, 59, 163, 233, 609 |
| AccBSI | CCGCTC | 4 cut(s) | 393, 442, 673, 685 |
| AccII | CGCG | 1 cut(s) | 413 |
| AclWI | GGATC | 1 cut(s) | 760 |
| AcsI | RAATTY | 1 cut(s) | 422 |
| AcuI | CTGAAG | 1 cut(s) | 755 |
| AcyI | GRCGYC | 2 cut(s) | 24, 610 |
| AdeI | CACNNNGTG | 1 cut(s) | 138 |
| AfaI | GTAC | 1 cut(s) | 235 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 69, 141, 355, 442, 619, 775 |
| AgsI | TTSAA | 1 cut(s) | 47 |
| AluBI | AGCT | 5 cut(s) | 56, 534, 571, 706, 811 |
| AluI | AGCT | 5 cut(s) | 56, 534, 571, 706, 811 |
| Alw26I | GTCTC | 2 cut(s) | 302, 703 |
| AlwI | GGATC | 1 cut(s) | 760 |
| Ama87I | CYCGRG | 2 cut(s) | 240, 680 |
| AoxI | GGCC | 6 cut(s) | 90, 143, 218, 318, 345, 579 |
| ApaI | GGGCCC | 1 cut(s) | 147 |
| ApoI | RAATTY | 1 cut(s) | 422 |
| Asp718I | GGTACC | 1 cut(s) | 233 |
| AspLEI | GCGC | 4 cut(s) | 26, 127, 413, 612 |
| AspS9I | GGNCC | 7 cut(s) | 91, 143, 144, 318, 346, 495, 676 |
| AsuC2I | CCSGG | 1 cut(s) | 136 |
| AsuHPI | GGTGA | 2 cut(s) | 124, 370 |
| AvaI | CYCGRG | 2 cut(s) | 240, 680 |
| AvaII | GGWCC | 2 cut(s) | 495, 676 |
| BaeGI | GKGCMC | 2 cut(s) | 147, 168 |
| BanI | GGYRCC | 5 cut(s) | 23, 59, 163, 233, 609 |
| BanII | GRGCYC | 1 cut(s) | 147 |
| BbsI | GAAGAC | 1 cut(s) | 303 |
| BccI | CCATC | 3 cut(s) | 320, 465, 485 |
| BceAI | ACGGC | 1 cut(s) | 511 |
| BciVI | GTATCC | 1 cut(s) | 569 |
| BcnI | CCSGG | 1 cut(s) | 136 |
| BcoDI | GTCTC | 2 cut(s) | 302, 703 |
| BfmI | CTRYAG | 1 cut(s) | 795 |
| BfoI | RGCGCY | 3 cut(s) | 27, 128, 613 |
| BfuAI | ACCTGC | 1 cut(s) | 100 |
| BfuI | GTATCC | 1 cut(s) | 569 |
| BisI | GCNGC | 5 cut(s) | 5, 203, 228, 263, 744 |
| BlsI | GCNGC | 5 cut(s) | 6, 204, 229, 264, 745 |
| Bme1390I | CCNGG | 1 cut(s) | 136 |
| Bme18I | GGWCC | 2 cut(s) | 495, 676 |
| BmeT110I | CYCGRG | 2 cut(s) | 240, 680 |
| BmgT120I | GGNCC | 7 cut(s) | 91, 143, 144, 318, 346, 495, 676 |
| BmrFI | CCNGG | 1 cut(s) | 136 |
| BmsI | GCATC | 3 cut(s) | 198, 631, 769 |
| BoxI | GACNNNNGTC | 1 cut(s) | 551 |
| BpiI | GAAGAC | 1 cut(s) | 303 |
| BpmI | CTGGAG | 2 cut(s) | 218, 728 |
| Bpu10I | CCTNAGC | 2 cut(s) | 438, 747 |
| BpuMI | CCSGG | 1 cut(s) | 136 |
| BsaHI | GRCGYC | 2 cut(s) | 24, 610 |
| BsaI | GGTCTC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 4 cut(s) | 67, 171, 618, 646 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 683, 713 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 69, 141, 355, 442, 619, 775 |
| Bse1I | ACTGG | 1 cut(s) | 179 |
| BseDI | CCNNGG | 4 cut(s) | 67, 171, 618, 646 |
| BseGI | GGATG | 4 cut(s) | 496, 604, 646, 784 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 69, 141, 355, 442, 619, 775 |
| BseMII | CTCAG | 1 cut(s) | 429 |
| BseNI | ACTGG | 1 cut(s) | 179 |
| BseSI | GKGCMC | 2 cut(s) | 147, 168 |
| BseYI | CCCAGC | 1 cut(s) | 571 |
| BsgI | GTGCAG | 1 cut(s) | 128 |
| Bsh1236I | CGCG | 1 cut(s) | 413 |
| BshFI | GGCC | 6 cut(s) | 92, 145, 220, 320, 347, 581 |
| BshNI | GGYRCC | 5 cut(s) | 23, 59, 163, 233, 609 |
| BsiHKCI | CYCGRG | 2 cut(s) | 240, 680 |
| BsiSI | CCGG | 1 cut(s) | 136 |
| BslFI | GGGAC | 2 cut(s) | 508, 689 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 69, 141, 355, 442, 619, 775 |
| BsmAI | GTCTC | 2 cut(s) | 302, 703 |
| BsmFI | GGGAC | 2 cut(s) | 508, 689 |
| BsmI | GAATGC | 1 cut(s) | 632 |
| BsnI | GGCC | 6 cut(s) | 92, 145, 220, 320, 347, 581 |
| Bso31I | GGTCTC | 1 cut(s) | 302 |
| BsoBI | CYCGRG | 2 cut(s) | 240, 680 |
| Bsp120I | GGGCCC | 1 cut(s) | 143 |
| Bsp1286I | GDGCHC | 2 cut(s) | 147, 168 |
| Bsp143I | GATC | 2 cut(s) | 733, 765 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspANI | GGCC | 6 cut(s) | 92, 145, 220, 320, 347, 581 |
| BspCNI | CTCAG | 1 cut(s) | 430 |
| BspFNI | CGCG | 1 cut(s) | 413 |
| BspMAI | CTGCAG | 1 cut(s) | 799 |
| BspMI | ACCTGC | 1 cut(s) | 100 |
| BspPI | GGATC | 1 cut(s) | 760 |
| BspT107I | GGYRCC | 5 cut(s) | 23, 59, 163, 233, 609 |
| BspTNI | GGTCTC | 1 cut(s) | 302 |
| BsrBI | CCGCTC | 4 cut(s) | 393, 442, 673, 685 |
| BsrI | ACTGG | 1 cut(s) | 179 |
| BssECI | CCNNGG | 4 cut(s) | 67, 171, 618, 646 |
| BssMI | GATC | 2 cut(s) | 733, 765 |
| BssNI | GRCGYC | 2 cut(s) | 24, 610 |
| BssT1I | CCWWGG | 3 cut(s) | 67, 171, 618 |
| Bst4CI | ACNGT | 5 cut(s) | 32, 358, 499, 522, 667 |
| Bst6I | CTCTTC | 2 cut(s) | 326, 458 |
| BstACI | GRCGYC | 2 cut(s) | 24, 610 |
| BstC8I | GCNNGC | 5 cut(s) | 129, 345, 391, 653, 657 |
| BstDEI | CTNAG | 3 cut(s) | 438, 747, 753 |
| BstDSI | CCRYGG | 2 cut(s) | 171, 646 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 617 |
| BstF5I | GGATG | 4 cut(s) | 496, 604, 646, 784 |
| BstFNI | CGCG | 1 cut(s) | 413 |
| BstH2I | RGCGCY | 3 cut(s) | 27, 128, 613 |
| BstHHI | GCGC | 4 cut(s) | 26, 127, 413, 612 |
| BstKTI | GATC | 2 cut(s) | 736, 768 |
| BstMAI | GTCTC | 2 cut(s) | 302, 703 |
| BstMBI | GATC | 2 cut(s) | 733, 765 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 202, 208, 217, 344, 349, 523, 641, 749, 794 |
| BstNSI | RCATGY | 1 cut(s) | 655 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 551 |
| BstSCI | CCNGG | 1 cut(s) | 134 |
| BstSFI | CTRYAG | 1 cut(s) | 795 |
| BstSLI | GKGCMC | 2 cut(s) | 147, 168 |
| BstUI | CGCG | 1 cut(s) | 413 |
| BstV2I | GAAGAC | 1 cut(s) | 303 |
| BstX2I | RGATCY | 1 cut(s) | 765 |
| BstYI | RGATCY | 1 cut(s) | 765 |
| BsuI | GTATCC | 1 cut(s) | 569 |
| BsuRI | GGCC | 6 cut(s) | 92, 145, 220, 320, 347, 581 |
| BtgI | CCRYGG | 2 cut(s) | 171, 646 |
| BtsCI | GGATG | 4 cut(s) | 496, 604, 646, 784 |
| BtsI | GCAGTG | 1 cut(s) | 519 |
| BtsIMutI | CAGTG | 3 cut(s) | 186, 519, 663 |
| BveI | ACCTGC | 1 cut(s) | 100 |
| Cac8I | GCNNGC | 5 cut(s) | 129, 345, 391, 653, 657 |
| CfoI | GCGC | 4 cut(s) | 26, 127, 413, 612 |
| Cfr13I | GGNCC | 7 cut(s) | 91, 143, 144, 318, 346, 495, 676 |
| Csp6I | GTAC | 1 cut(s) | 234 |
| CviAII | CATG | 3 cut(s) | 172, 652, 695 |
| CviQI | GTAC | 1 cut(s) | 234 |
| DdeI | CTNAG | 3 cut(s) | 438, 747, 753 |
| DinI | GGCGCC | 2 cut(s) | 25, 611 |
| DpnI | GATC | 2 cut(s) | 735, 767 |
| DpnII | GATC | 2 cut(s) | 733, 765 |
| DraIII | CACNNNGTG | 1 cut(s) | 138 |
| Eam1104I | CTCTTC | 2 cut(s) | 326, 458 |
| EarI | CTCTTC | 2 cut(s) | 326, 458 |
| EciI | GGCGGA | 2 cut(s) | 491, 611 |
| Eco130I | CCWWGG | 3 cut(s) | 67, 171, 618 |
| Eco147I | AGGCCT | 1 cut(s) | 220 |
| Eco24I | GRGCYC | 1 cut(s) | 147 |
| Eco31I | GGTCTC | 1 cut(s) | 302 |
| Eco47I | GGWCC | 2 cut(s) | 495, 676 |
| Eco57I | CTGAAG | 1 cut(s) | 755 |
| Eco88I | CYCGRG | 2 cut(s) | 240, 680 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 617 |
| EcoO109I | RGGNCCY | 5 cut(s) | 91, 144, 318, 346, 676 |
| EcoT14I | CCWWGG | 3 cut(s) | 67, 171, 618 |
| EcoT38I | GRGCYC | 1 cut(s) | 147 |
| EgeI | GGCGCC | 2 cut(s) | 25, 611 |
| EheI | GGCGCC | 2 cut(s) | 25, 611 |
| ErhI | CCWWGG | 3 cut(s) | 67, 171, 618 |
| FaeI | CATG | 3 cut(s) | 175, 655, 698 |
| FaiI | YATR | 7 cut(s) | 173, 417, 633, 638, 653, 696, 719 |
| FaqI | GGGAC | 2 cut(s) | 508, 689 |
| FatI | CATG | 3 cut(s) | 171, 651, 694 |
| FauI | CCCGC | 6 cut(s) | 74, 184, 357, 435, 666, 768 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 203, 228, 263, 744 |
| FokI | GGATG | 4 cut(s) | 503, 611, 653, 791 |
| FriOI | GRGCYC | 1 cut(s) | 147 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 203, 228, 263, 744 |
| GlaI | GCGC | 4 cut(s) | 25, 126, 412, 611 |
| GluI | GCNGC | 5 cut(s) | 5, 203, 228, 263, 744 |
| GsaI | CCCAGC | 1 cut(s) | 575 |
| GsuI | CTGGAG | 2 cut(s) | 218, 728 |
| HaeII | RGCGCY | 3 cut(s) | 27, 128, 613 |
| HaeIII | GGCC | 6 cut(s) | 92, 145, 220, 320, 347, 581 |
| HapII | CCGG | 1 cut(s) | 136 |
| HhaI | GCGC | 4 cut(s) | 26, 127, 413, 612 |
| Hin1I | GRCGYC | 2 cut(s) | 24, 610 |
| Hin1II | CATG | 3 cut(s) | 175, 655, 698 |
| Hin6I | GCGC | 4 cut(s) | 24, 125, 411, 610 |
| HinP1I | GCGC | 4 cut(s) | 24, 125, 411, 610 |
| HpaII | CCGG | 1 cut(s) | 136 |
| HphI | GGTGA | 2 cut(s) | 124, 370 |
| Hpy188I | TCNGA | 2 cut(s) | 255, 399 |
| Hpy188III | TCNNGA | 2 cut(s) | 242, 562 |
| Hpy99I | CGWCG | 2 cut(s) | 32, 358 |
| HpyAV | CCTTC | 1 cut(s) | 779 |
| HpyCH4III | ACNGT | 5 cut(s) | 32, 358, 499, 522, 667 |
| HpyCH4V | TGCA | 4 cut(s) | 109, 211, 517, 797 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 202, 208, 217, 344, 349, 523, 641, 749, 794 |
| HpyF3I | CTNAG | 3 cut(s) | 438, 747, 753 |
| Hsp92I | GRCGYC | 2 cut(s) | 24, 610 |
| Hsp92II | CATG | 3 cut(s) | 175, 655, 698 |
| HspAI | GCGC | 4 cut(s) | 24, 125, 411, 610 |
| KasI | GGCGCC | 2 cut(s) | 23, 609 |
| KpnI | GGTACC | 1 cut(s) | 237 |
| Kzo9I | GATC | 2 cut(s) | 733, 765 |
| LmnI | GCTCC | 3 cut(s) | 84, 199, 709 |
| LweI | GCATC | 3 cut(s) | 198, 631, 769 |
| MaeIII | GTNAC | 1 cut(s) | 181 |
| MalI | GATC | 2 cut(s) | 735, 767 |
| MbiI | CCGCTC | 4 cut(s) | 393, 442, 673, 685 |
| MboI | GATC | 2 cut(s) | 733, 765 |
| MboII | GAAGA | 7 cut(s) | 268, 296, 305, 308, 343, 445, 817 |
| MflI | RGATCY | 1 cut(s) | 765 |
| MhlI | GDGCHC | 2 cut(s) | 147, 168 |
| MluCI | AATT | 2 cut(s) | 212, 422 |
| Mly113I | GGCGCC | 2 cut(s) | 24, 610 |
| MmeI | TCCRAC | 1 cut(s) | 468 |
| MseI | TTAA | 1 cut(s) | 215 |
| MslI | CAYNNNNRTG | 1 cut(s) | 462 |
| MspA1I | CMGCKG | 2 cut(s) | 230, 775 |
| MspI | CCGG | 1 cut(s) | 136 |
| MspR9I | CCNGG | 1 cut(s) | 136 |
| Mva1269I | GAATGC | 1 cut(s) | 632 |
| MvnI | CGCG | 1 cut(s) | 413 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 202, 208, 217, 344, 349, 523, 641, 749, 794 |
| NarI | GGCGCC | 2 cut(s) | 24, 610 |
| NciI | CCSGG | 1 cut(s) | 136 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeII | GATC | 2 cut(s) | 733, 765 |
| NlaIII | CATG | 3 cut(s) | 175, 655, 698 |
| NmeAIII | GCCGAG | 1 cut(s) | 515 |
| NmuCI | GTSAC | 1 cut(s) | 181 |
| NspI | RCATGY | 1 cut(s) | 655 |
| PaeI | GCATGC | 1 cut(s) | 655 |
| PaeR7I | CTCGAG | 1 cut(s) | 680 |
| PaqCI | CACCTGC | 1 cut(s) | 100 |
| PceI | AGGCCT | 1 cut(s) | 220 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 36, 687 |
| PctI | GAATGC | 1 cut(s) | 632 |
| PflFI | GACNNNGTC | 1 cut(s) | 695 |
| PkrI | GCNGC | 5 cut(s) | 6, 204, 229, 264, 745 |
| PluTI | GGCGCC | 2 cut(s) | 27, 613 |
| PpuMI | RGGWCCY | 1 cut(s) | 676 |
| PshAI | GACNNNNGTC | 1 cut(s) | 551 |
| Psp5II | RGGWCCY | 1 cut(s) | 676 |
| PspFI | CCCAGC | 1 cut(s) | 571 |
| PspOMI | GGGCCC | 1 cut(s) | 143 |
| PspPI | GGNCC | 7 cut(s) | 91, 143, 144, 318, 346, 495, 676 |
| PspPPI | RGGWCCY | 1 cut(s) | 676 |
| PspXI | VCTCGAGB | 1 cut(s) | 680 |
| PstI | CTGCAG | 1 cut(s) | 799 |
| PsuI | RGATCY | 1 cut(s) | 765 |
| PsyI | GACNNNGTC | 1 cut(s) | 695 |
| RsaI | GTAC | 1 cut(s) | 235 |
| RsaNI | GTAC | 1 cut(s) | 234 |
| RseI | CAYNNNNRTG | 1 cut(s) | 462 |
| SaqAI | TTAA | 1 cut(s) | 215 |
| SatI | GCNGC | 5 cut(s) | 5, 203, 228, 263, 744 |
| Sau3AI | GATC | 2 cut(s) | 733, 765 |
| Sau96I | GGNCC | 7 cut(s) | 91, 143, 144, 318, 346, 495, 676 |
| ScrFI | CCNGG | 1 cut(s) | 136 |
| SduI | GDGCHC | 2 cut(s) | 147, 168 |
| SfaNI | GCATC | 3 cut(s) | 198, 631, 769 |
| SfcI | CTRYAG | 1 cut(s) | 795 |
| SfoI | GGCGCC | 2 cut(s) | 25, 611 |
| Sfr274I | CTCGAG | 1 cut(s) | 680 |
| SinI | GGWCC | 2 cut(s) | 495, 676 |
| SlaI | CTCGAG | 1 cut(s) | 680 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 462 |
| SmlI | CTYRAG | 1 cut(s) | 680 |
| SmoI | CTYRAG | 1 cut(s) | 680 |
| SphI | GCATGC | 1 cut(s) | 655 |
| Sse9I | AATT | 2 cut(s) | 212, 422 |
| SseBI | AGGCCT | 1 cut(s) | 220 |
| SspDI | GGCGCC | 2 cut(s) | 23, 609 |
| StuI | AGGCCT | 1 cut(s) | 220 |
| StyD4I | CCNGG | 1 cut(s) | 134 |
| StyI | CCWWGG | 3 cut(s) | 67, 171, 618 |
| TaaI | ACNGT | 5 cut(s) | 32, 358, 499, 522, 667 |
| TaqI | TCGA | 1 cut(s) | 681 |
| TaqII | GACCGA | 1 cut(s) | 446 |
| TasI | AATT | 2 cut(s) | 212, 422 |
| TauI | GCSGC | 5 cut(s) | 7, 205, 230, 265, 746 |
| Tru1I | TTAA | 1 cut(s) | 215 |
| Tru9I | TTAA | 1 cut(s) | 215 |
| TscAI | CASTG | 3 cut(s) | 186, 519, 670 |
| TseFI | GTSAC | 1 cut(s) | 181 |
| Tsp45I | GTSAC | 1 cut(s) | 181 |
| TspDTI | ATGAA | 1 cut(s) | 297 |
| TspRI | CASTG | 3 cut(s) | 186, 519, 670 |
| Tth111I | GACNNNGTC | 1 cut(s) | 695 |
| VpaK11BI | GGWCC | 2 cut(s) | 495, 676 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 617 |
| XapI | RAATTY | 1 cut(s) | 422 |
| XceI | RCATGY | 1 cut(s) | 655 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 589 |
| XhoI | CTCGAG | 1 cut(s) | 680 |