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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 129 |
| AarI | CACCTGC | 1 cut(s) | 628 |
| Acc36I | ACCTGC | 1 cut(s) | 628 |
| AccB1I | GGYRCC | 2 cut(s) | 491, 595 |
| AccBSI | CCGCTC | 2 cut(s) | 817, 883 |
| AccI | GTMKAC | 1 cut(s) | 909 |
| AccII | CGCG | 5 cut(s) | 38, 156, 252, 288, 293 |
| AclWI | GGATC | 5 cut(s) | 277, 377, 524, 951, 970 |
| AcuI | CTGAAG | 3 cut(s) | 67, 959, 965 |
| AdeI | CACNNNGTG | 1 cut(s) | 570 |
| AfaI | GTAC | 1 cut(s) | 347 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 14, 42, 501, 573, 742, 882, 985 |
| AflIII | ACRYGT | 1 cut(s) | 291 |
| AgeI | ACCGGT | 1 cut(s) | 215 |
| AluBI | AGCT | 8 cut(s) | 226, 634, 802, 865, 916, 985, 1006, 1048 |
| AluI | AGCT | 8 cut(s) | 226, 634, 802, 865, 916, 985, 1006, 1048 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| AlwI | GGATC | 5 cut(s) | 277, 377, 524, 951, 970 |
| Ama87I | CYCGRG | 1 cut(s) | 138 |
| AoxI | GGCC | 5 cut(s) | 575, 705, 732, 789, 1018 |
| ApaI | GGGCCC | 2 cut(s) | 579, 709 |
| ApeKI | GCWGC | 6 cut(s) | 226, 427, 541, 634, 755, 1058 |
| AseI | ATTAAT | 1 cut(s) | 324 |
| AsiGI | ACCGGT | 1 cut(s) | 215 |
| AspLEI | GCGC | 4 cut(s) | 254, 458, 535, 559 |
| AspS9I | GGNCC | 8 cut(s) | 18, 310, 575, 576, 705, 706, 733, 886 |
| AsuHPI | GGTGA | 2 cut(s) | 205, 757 |
| AsuNHI | GCTAGC | 1 cut(s) | 358 |
| AvaI | CYCGRG | 1 cut(s) | 138 |
| AvaII | GGWCC | 3 cut(s) | 18, 310, 886 |
| BaeGI | GKGCMC | 3 cut(s) | 579, 600, 709 |
| BanI | GGYRCC | 2 cut(s) | 491, 595 |
| BanII | GRGCYC | 2 cut(s) | 579, 709 |
| BbsI | GAAGAC | 1 cut(s) | 690 |
| BbvI | GCAGC | 5 cut(s) | 213, 414, 553, 621, 742 |
| BccI | CCATC | 6 cut(s) | 29, 36, 213, 301, 707, 841 |
| BceAI | ACGGC | 1 cut(s) | 860 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfaI | CTAG | 2 cut(s) | 359, 917 |
| BfmI | CTRYAG | 1 cut(s) | 635 |
| BfoI | RGCGCY | 1 cut(s) | 560 |
| BfuAI | ACCTGC | 1 cut(s) | 628 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 503 |
| BlpI | GCTNAGC | 1 cut(s) | 366 |
| Bme18I | GGWCC | 3 cut(s) | 18, 310, 886 |
| BmeT110I | CYCGRG | 1 cut(s) | 138 |
| BmgT120I | GGNCC | 8 cut(s) | 18, 310, 575, 576, 705, 706, 733, 886 |
| BmrI | ACTGGG | 1 cut(s) | 413 |
| BmsI | GCATC | 4 cut(s) | 423, 448, 457, 841 |
| BmtI | GCTAGC | 1 cut(s) | 362 |
| BmuI | ACTGGG | 1 cut(s) | 413 |
| BoxI | GACNNNNGTC | 1 cut(s) | 377 |
| BpiI | GAAGAC | 1 cut(s) | 690 |
| BpmI | CTGGAG | 1 cut(s) | 356 |
| Bpu10I | CCTNAGC | 1 cut(s) | 957 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 366 |
| BpuEI | CTTGAG | 1 cut(s) | 875 |
| BsaJI | CCNNGG | 6 cut(s) | 8, 36, 499, 545, 603, 828 |
| BsaWI | WCCGGW | 1 cut(s) | 215 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 329, 359 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 14, 42, 501, 573, 742, 882, 985 |
| Bse118I | RCCGGY | 1 cut(s) | 215 |
| Bse1I | ACTGG | 3 cut(s) | 406, 419, 611 |
| BseDI | CCNNGG | 6 cut(s) | 8, 36, 499, 545, 603, 828 |
| BseGI | GGATG | 2 cut(s) | 47, 856 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 14, 42, 501, 573, 742, 882, 985 |
| BseMII | CTCAG | 3 cut(s) | 278, 380, 1040 |
| BseNI | ACTGG | 3 cut(s) | 406, 419, 611 |
| BseSI | GKGCMC | 3 cut(s) | 579, 600, 709 |
| BseXI | GCAGC | 5 cut(s) | 213, 414, 553, 621, 742 |
| BseYI | CCCAGC | 1 cut(s) | 353 |
| BsgI | GTGCAG | 2 cut(s) | 560, 791 |
| Bsh1236I | CGCG | 5 cut(s) | 38, 156, 252, 288, 293 |
| Bsh1285I | CGRYCG | 1 cut(s) | 381 |
| BshFI | GGCC | 5 cut(s) | 577, 707, 734, 791, 1020 |
| BshNI | GGYRCC | 2 cut(s) | 491, 595 |
| BshTI | ACCGGT | 1 cut(s) | 215 |
| BsiEI | CGRYCG | 1 cut(s) | 381 |
| BsiHKCI | CYCGRG | 1 cut(s) | 138 |
| BsiSI | CCGG | 2 cut(s) | 216, 1021 |
| BslFI | GGGAC | 2 cut(s) | 31, 899 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 14, 42, 501, 573, 742, 882, 985 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| BsmFI | GGGAC | 2 cut(s) | 31, 899 |
| BsnI | GGCC | 5 cut(s) | 577, 707, 734, 791, 1020 |
| BsoBI | CYCGRG | 1 cut(s) | 138 |
| Bsp120I | GGGCCC | 2 cut(s) | 575, 705 |
| Bsp1286I | GDGCHC | 3 cut(s) | 579, 600, 709 |
| Bsp143I | GATC | 6 cut(s) | 235, 282, 382, 516, 943, 975 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 366 |
| BspANI | GGCC | 5 cut(s) | 577, 707, 734, 791, 1020 |
| BspCNI | CTCAG | 3 cut(s) | 277, 379, 1041 |
| BspFNI | CGCG | 5 cut(s) | 38, 156, 252, 288, 293 |
| BspMAI | CTGCAG | 1 cut(s) | 639 |
| BspMI | ACCTGC | 1 cut(s) | 628 |
| BspOI | GCTAGC | 1 cut(s) | 362 |
| BspPI | GGATC | 5 cut(s) | 277, 377, 524, 951, 970 |
| BspT107I | GGYRCC | 2 cut(s) | 491, 595 |
| BsrBI | CCGCTC | 2 cut(s) | 817, 883 |
| BsrFI | RCCGGY | 1 cut(s) | 215 |
| BsrI | ACTGG | 3 cut(s) | 406, 419, 611 |
| BssAI | RCCGGY | 1 cut(s) | 215 |
| BssECI | CCNNGG | 6 cut(s) | 8, 36, 499, 545, 603, 828 |
| BssMI | GATC | 6 cut(s) | 235, 282, 382, 516, 943, 975 |
| BssT1I | CCWWGG | 4 cut(s) | 8, 499, 603, 828 |
| Bst4CI | ACNGT | 4 cut(s) | 243, 379, 745, 751 |
| Bst6I | CTCTTC | 3 cut(s) | 141, 672, 713 |
| BstC8I | GCNNGC | 8 cut(s) | 122, 360, 561, 709, 732, 804, 856, 863 |
| BstDEI | CTNAG | 5 cut(s) | 264, 366, 957, 963, 1049 |
| BstDSI | CCRYGG | 1 cut(s) | 36 |
| BstF5I | GGATG | 2 cut(s) | 47, 856 |
| BstFNI | CGCG | 5 cut(s) | 38, 156, 252, 288, 293 |
| BstH2I | RGCGCY | 1 cut(s) | 560 |
| BstHHI | GCGC | 4 cut(s) | 254, 458, 535, 559 |
| BstKTI | GATC | 6 cut(s) | 238, 285, 385, 519, 946, 978 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 6 cut(s) | 235, 282, 382, 516, 943, 975 |
| BstMCI | CGRYCG | 1 cut(s) | 381 |
| BstNSI | RCATGY | 1 cut(s) | 908 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 377 |
| BstSFI | CTRYAG | 1 cut(s) | 635 |
| BstSLI | GKGCMC | 3 cut(s) | 579, 600, 709 |
| BstUI | CGCG | 5 cut(s) | 38, 156, 252, 288, 293 |
| BstV1I | GCAGC | 5 cut(s) | 213, 414, 553, 621, 742 |
| BstV2I | GAAGAC | 1 cut(s) | 690 |
| BstX2I | RGATCY | 1 cut(s) | 975 |
| BstYI | RGATCY | 1 cut(s) | 975 |
| BsuRI | GGCC | 5 cut(s) | 577, 707, 734, 791, 1020 |
| BtgI | CCRYGG | 1 cut(s) | 36 |
| BtgZI | GCGATG | 1 cut(s) | 684 |
| BtsCI | GGATG | 2 cut(s) | 47, 856 |
| BtsIMutI | CAGTG | 2 cut(s) | 426, 618 |
| BveI | ACCTGC | 1 cut(s) | 628 |
| Cac8I | GCNNGC | 8 cut(s) | 122, 360, 561, 709, 732, 804, 856, 863 |
| CfoI | GCGC | 4 cut(s) | 254, 458, 535, 559 |
| Cfr10I | RCCGGY | 1 cut(s) | 215 |
| Cfr13I | GGNCC | 8 cut(s) | 18, 310, 575, 576, 705, 706, 733, 886 |
| Cfr42I | CCGCGG | 1 cut(s) | 39 |
| CseI | GACGC | 1 cut(s) | 299 |
| Csp6I | GTAC | 1 cut(s) | 346 |
| CspAI | ACCGGT | 1 cut(s) | 215 |
| CviAII | CATG | 2 cut(s) | 905, 934 |
| CviQI | GTAC | 1 cut(s) | 346 |
| DdeI | CTNAG | 5 cut(s) | 264, 366, 957, 963, 1049 |
| DpnI | GATC | 6 cut(s) | 237, 284, 384, 518, 945, 977 |
| DpnII | GATC | 6 cut(s) | 235, 282, 382, 516, 943, 975 |
| DraIII | CACNNNGTG | 1 cut(s) | 570 |
| Eam1104I | CTCTTC | 3 cut(s) | 141, 672, 713 |
| EarI | CTCTTC | 3 cut(s) | 141, 672, 713 |
| EciI | GGCGGA | 2 cut(s) | 821, 848 |
| Eco130I | CCWWGG | 4 cut(s) | 8, 499, 603, 828 |
| Eco24I | GRGCYC | 2 cut(s) | 579, 709 |
| Eco47I | GGWCC | 3 cut(s) | 18, 310, 886 |
| Eco57I | CTGAAG | 3 cut(s) | 67, 959, 965 |
| Eco88I | CYCGRG | 1 cut(s) | 138 |
| EcoO109I | RGGNCCY | 4 cut(s) | 576, 705, 733, 886 |
| EcoT14I | CCWWGG | 4 cut(s) | 8, 499, 603, 828 |
| EcoT38I | GRGCYC | 2 cut(s) | 579, 709 |
| ErhI | CCWWGG | 4 cut(s) | 8, 499, 603, 828 |
| FaeI | CATG | 2 cut(s) | 908, 937 |
| FaiI | YATR | 7 cut(s) | 27, 129, 344, 906, 929, 935, 1063 |
| FaqI | GGGAC | 2 cut(s) | 31, 899 |
| FatI | CATG | 2 cut(s) | 904, 933 |
| FauI | CCCGC | 7 cut(s) | 6, 31, 49, 475, 716, 744, 876 |
| FblI | GTMKAC | 1 cut(s) | 909 |
| FokI | GGATG | 2 cut(s) | 54, 863 |
| FriOI | GRGCYC | 2 cut(s) | 579, 709 |
| FspBI | CTAG | 2 cut(s) | 359, 917 |
| GlaI | GCGC | 4 cut(s) | 253, 457, 534, 558 |
| GsaI | CCCAGC | 1 cut(s) | 357 |
| GsuI | CTGGAG | 1 cut(s) | 356 |
| HaeII | RGCGCY | 1 cut(s) | 560 |
| HaeIII | GGCC | 5 cut(s) | 577, 707, 734, 791, 1020 |
| HapII | CCGG | 2 cut(s) | 216, 1021 |
| HgaI | GACGC | 1 cut(s) | 299 |
| HhaI | GCGC | 4 cut(s) | 254, 458, 535, 559 |
| Hin1II | CATG | 2 cut(s) | 908, 937 |
| Hin6I | GCGC | 4 cut(s) | 252, 456, 533, 557 |
| HinP1I | GCGC | 4 cut(s) | 252, 456, 533, 557 |
| HincII | GTYRAC | 1 cut(s) | 246 |
| HindII | GTYRAC | 1 cut(s) | 246 |
| HinfI | GANTC | 4 cut(s) | 184, 247, 260, 989 |
| HpaII | CCGG | 2 cut(s) | 216, 1021 |
| HphI | GGTGA | 2 cut(s) | 205, 757 |
| Hpy166II | GTNNAC | 2 cut(s) | 246, 910 |
| Hpy188I | TCNGA | 4 cut(s) | 97, 113, 271, 412 |
| Hpy188III | TCNNGA | 7 cut(s) | 85, 335, 520, 947, 1000, 1014, 1042 |
| Hpy8I | GTNNAC | 2 cut(s) | 246, 910 |
| Hpy99I | CGWCG | 3 cut(s) | 293, 379, 745 |
| HpyAV | CCTTC | 5 cut(s) | 91, 577, 769, 934, 989 |
| HpyCH4III | ACNGT | 4 cut(s) | 243, 379, 745, 751 |
| HpyCH4IV | ACGT | 1 cut(s) | 810 |
| HpyCH4V | TGCA | 6 cut(s) | 541, 623, 637, 643, 772, 784 |
| HpyF3I | CTNAG | 5 cut(s) | 264, 366, 957, 963, 1049 |
| HpySE526I | ACGT | 1 cut(s) | 810 |
| Hsp92II | CATG | 2 cut(s) | 908, 937 |
| HspAI | GCGC | 4 cut(s) | 252, 456, 533, 557 |
| KspI | CCGCGG | 1 cut(s) | 39 |
| Kzo9I | GATC | 6 cut(s) | 235, 282, 382, 516, 943, 975 |
| LmnI | GCTCC | 4 cut(s) | 73, 223, 631, 1055 |
| Lsp1109I | GCAGC | 5 cut(s) | 213, 414, 553, 621, 742 |
| LweI | GCATC | 4 cut(s) | 423, 448, 457, 841 |
| MaeI | CTAG | 2 cut(s) | 359, 917 |
| MaeII | ACGT | 1 cut(s) | 810 |
| MaeIII | GTNAC | 2 cut(s) | 613, 745 |
| MalI | GATC | 6 cut(s) | 237, 284, 384, 518, 945, 977 |
| MbiI | CCGCTC | 2 cut(s) | 817, 883 |
| MboI | GATC | 6 cut(s) | 235, 282, 382, 516, 943, 975 |
| MboII | GAAGA | 7 cut(s) | 158, 200, 686, 689, 695, 727, 730 |
| MflI | RGATCY | 1 cut(s) | 975 |
| MhlI | GDGCHC | 3 cut(s) | 579, 600, 709 |
| MluI | ACGCGT | 1 cut(s) | 291 |
| MlyI | GAGTC | 1 cut(s) | 241 |
| MmeI | TCCRAC | 2 cut(s) | 75, 609 |
| MseI | TTAA | 3 cut(s) | 90, 189, 324 |
| MslI | CAYNNNNRTG | 1 cut(s) | 932 |
| MspA1I | CMGCKG | 3 cut(s) | 38, 353, 985 |
| MspI | CCGG | 2 cut(s) | 216, 1021 |
| MvnI | CGCG | 5 cut(s) | 38, 156, 252, 288, 293 |
| NdeII | GATC | 6 cut(s) | 235, 282, 382, 516, 943, 975 |
| NheI | GCTAGC | 1 cut(s) | 358 |
| NlaIII | CATG | 2 cut(s) | 908, 937 |
| NmeAIII | GCCGAG | 1 cut(s) | 570 |
| NmuCI | GTSAC | 2 cut(s) | 613, 745 |
| NspI | RCATGY | 1 cut(s) | 908 |
| PaqCI | CACCTGC | 1 cut(s) | 628 |
| PfeI | GAWTC | 3 cut(s) | 184, 260, 989 |
| PflFI | GACNNNGTC | 1 cut(s) | 929 |
| PinAI | ACCGGT | 1 cut(s) | 215 |
| PleI | GAGTC | 1 cut(s) | 241 |
| PpsI | GAGTC | 1 cut(s) | 241 |
| PpuMI | RGGWCCY | 1 cut(s) | 886 |
| PshAI | GACNNNNGTC | 1 cut(s) | 377 |
| PshBI | ATTAAT | 1 cut(s) | 324 |
| PsiI | TTATAA | 1 cut(s) | 129 |
| Psp5II | RGGWCCY | 1 cut(s) | 886 |
| PspFI | CCCAGC | 1 cut(s) | 353 |
| PspOMI | GGGCCC | 2 cut(s) | 575, 705 |
| PspPI | GGNCC | 8 cut(s) | 18, 310, 575, 576, 705, 706, 733, 886 |
| PspPPI | RGGWCCY | 1 cut(s) | 886 |
| PstI | CTGCAG | 1 cut(s) | 639 |
| PsuI | RGATCY | 1 cut(s) | 975 |
| PsyI | GACNNNGTC | 1 cut(s) | 929 |
| PvuII | CAGCTG | 1 cut(s) | 985 |
| RsaI | GTAC | 1 cut(s) | 347 |
| RsaNI | GTAC | 1 cut(s) | 346 |
| RseI | CAYNNNNRTG | 1 cut(s) | 932 |
| SacII | CCGCGG | 1 cut(s) | 39 |
| SaqAI | TTAA | 3 cut(s) | 90, 189, 324 |
| Sau3AI | GATC | 6 cut(s) | 235, 282, 382, 516, 943, 975 |
| Sau96I | GGNCC | 8 cut(s) | 18, 310, 575, 576, 705, 706, 733, 886 |
| SchI | GAGTC | 1 cut(s) | 241 |
| SduI | GDGCHC | 3 cut(s) | 579, 600, 709 |
| SfaNI | GCATC | 4 cut(s) | 423, 448, 457, 841 |
| SfcI | CTRYAG | 1 cut(s) | 635 |
| Sfr303I | CCGCGG | 1 cut(s) | 39 |
| SgrBI | CCGCGG | 1 cut(s) | 39 |
| SinI | GGWCC | 3 cut(s) | 18, 310, 886 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 932 |
| SmlI | CTYRAG | 1 cut(s) | 890 |
| SmoI | CTYRAG | 1 cut(s) | 890 |
| SspI | AATATT | 1 cut(s) | 871 |
| SspMI | CTAG | 2 cut(s) | 359, 917 |
| StyI | CCWWGG | 4 cut(s) | 8, 499, 603, 828 |
| TaaI | ACNGT | 4 cut(s) | 243, 379, 745, 751 |
| TaiI | ACGT | 1 cut(s) | 813 |
| TaqI | TCGA | 4 cut(s) | 62, 198, 234, 381 |
| TauI | GCSGC | 8 cut(s) | 353, 365, 439, 497, 655, 820, 861, 956 |
| TfiI | GAWTC | 3 cut(s) | 184, 260, 989 |
| Tru1I | TTAA | 3 cut(s) | 90, 189, 324 |
| Tru9I | TTAA | 3 cut(s) | 90, 189, 324 |
| TscAI | CASTG | 2 cut(s) | 426, 618 |
| TseFI | GTSAC | 2 cut(s) | 613, 745 |
| TseI | GCWGC | 6 cut(s) | 226, 427, 541, 634, 755, 1058 |
| Tsp45I | GTSAC | 2 cut(s) | 613, 745 |
| TspDTI | ATGAA | 1 cut(s) | 687 |
| TspRI | CASTG | 2 cut(s) | 426, 618 |
| Tth111I | GACNNNGTC | 1 cut(s) | 929 |
| VpaK11BI | GGWCC | 3 cut(s) | 18, 310, 886 |
| VspI | ATTAAT | 1 cut(s) | 324 |
| XceI | RCATGY | 1 cut(s) | 908 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 799 |
| XmiI | GTMKAC | 1 cut(s) | 909 |
| XspI | CTAG | 2 cut(s) | 359, 917 |