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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 240 |
| AccB1I | GGYRCC | 1 cut(s) | 248 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AccI | GTMKAC | 1 cut(s) | 65 |
| AclWI | GGATC | 1 cut(s) | 43 |
| AcoI | YGGCCR | 1 cut(s) | 27 |
| AcuI | CTGAAG | 2 cut(s) | 38, 107 |
| AcyI | GRCGYC | 2 cut(s) | 249, 416 |
| AfaI | GTAC | 1 cut(s) | 457 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 58, 196, 258, 482 |
| AflIII | ACRYGT | 1 cut(s) | 344 |
| AgsI | TTSAA | 1 cut(s) | 163 |
| AluBI | AGCT | 3 cut(s) | 85, 326, 479 |
| AluI | AGCT | 3 cut(s) | 85, 326, 479 |
| Alw26I | GTCTC | 1 cut(s) | 134 |
| AlwI | GGATC | 1 cut(s) | 43 |
| AoxI | GGCC | 2 cut(s) | 27, 130 |
| ApeKI | GCWGC | 4 cut(s) | 218, 323, 326, 500 |
| AspLEI | GCGC | 1 cut(s) | 251 |
| AspS9I | GGNCC | 4 cut(s) | 130, 229, 374, 396 |
| AsuHPI | GGTGA | 2 cut(s) | 134, 497 |
| AvaII | GGWCC | 3 cut(s) | 229, 374, 396 |
| BanI | GGYRCC | 1 cut(s) | 248 |
| BanII | GRGCYC | 1 cut(s) | 425 |
| BbvCI | CCTCAGC | 1 cut(s) | 480 |
| BbvI | GCAGC | 4 cut(s) | 205, 313, 335, 487 |
| BceAI | ACGGC | 2 cut(s) | 117, 438 |
| BcoDI | GTCTC | 1 cut(s) | 134 |
| BfaI | CTAG | 1 cut(s) | 308 |
| BfoI | RGCGCY | 1 cut(s) | 252 |
| BfuAI | ACCTGC | 1 cut(s) | 240 |
| BisI | GCNGC | 9 cut(s) | 27, 201, 216, 219, 299, 324, 327, 473, 501 |
| BlsI | GCNGC | 9 cut(s) | 28, 202, 217, 220, 300, 325, 328, 474, 502 |
| Bme18I | GGWCC | 3 cut(s) | 229, 374, 396 |
| BmgT120I | GGNCC | 4 cut(s) | 130, 229, 374, 396 |
| BmiI | GGNNCC | 3 cut(s) | 250, 398, 439 |
| BmrI | ACTGGG | 2 cut(s) | 268, 268 |
| BmuI | ACTGGG | 2 cut(s) | 268, 268 |
| BpmI | CTGGAG | 1 cut(s) | 357 |
| Bpu10I | CCTNAGC | 1 cut(s) | 480 |
| BsaHI | GRCGYC | 2 cut(s) | 249, 416 |
| BsaJI | CCNNGG | 2 cut(s) | 30, 150 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 58, 196, 258, 482 |
| Bse1I | ACTGG | 4 cut(s) | 263, 274, 282, 340 |
| BseDI | CCNNGG | 2 cut(s) | 30, 150 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 58, 196, 258, 482 |
| BseMII | CTCAG | 2 cut(s) | 186, 471 |
| BseNI | ACTGG | 4 cut(s) | 263, 274, 282, 340 |
| BseRI | GAGGAG | 1 cut(s) | 95 |
| BseXI | GCAGC | 4 cut(s) | 205, 313, 335, 487 |
| BseYI | CCCAGC | 2 cut(s) | 115, 390 |
| BshFI | GGCC | 2 cut(s) | 29, 132 |
| BshNI | GGYRCC | 1 cut(s) | 248 |
| BsiSI | CCGG | 1 cut(s) | 380 |
| BslFI | GGGAC | 1 cut(s) | 256 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 58, 196, 258, 482 |
| BsmAI | GTCTC | 1 cut(s) | 134 |
| BsmFI | GGGAC | 1 cut(s) | 256 |
| BsnI | GGCC | 2 cut(s) | 29, 132 |
| Bsp1286I | GDGCHC | 1 cut(s) | 425 |
| Bsp143I | GATC | 1 cut(s) | 48 |
| Bsp19I | CCATGG | 1 cut(s) | 150 |
| BspANI | GGCC | 2 cut(s) | 29, 132 |
| BspCNI | CTCAG | 2 cut(s) | 187, 472 |
| BspLI | GGNNCC | 3 cut(s) | 250, 398, 439 |
| BspMI | ACCTGC | 1 cut(s) | 240 |
| BspPI | GGATC | 1 cut(s) | 43 |
| BspT107I | GGYRCC | 1 cut(s) | 248 |
| BsrI | ACTGG | 4 cut(s) | 263, 274, 282, 340 |
| BssECI | CCNNGG | 2 cut(s) | 30, 150 |
| BssMI | GATC | 1 cut(s) | 48 |
| BssNI | GRCGYC | 2 cut(s) | 249, 416 |
| BssT1I | CCWWGG | 2 cut(s) | 30, 150 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 2 cut(s) | 249, 416 |
| BstC8I | GCNNGC | 3 cut(s) | 186, 296, 477 |
| BstDEI | CTNAG | 2 cut(s) | 195, 480 |
| BstDSI | CCRYGG | 1 cut(s) | 150 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 56, 194 |
| BstH2I | RGCGCY | 1 cut(s) | 252 |
| BstHHI | GCGC | 1 cut(s) | 251 |
| BstKTI | GATC | 1 cut(s) | 51 |
| BstMAI | GTCTC | 1 cut(s) | 134 |
| BstMBI | GATC | 1 cut(s) | 48 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 206, 215, 304 |
| BstV1I | GCAGC | 4 cut(s) | 205, 313, 335, 487 |
| BstX2I | RGATCY | 1 cut(s) | 48 |
| BstYI | RGATCY | 1 cut(s) | 48 |
| BsuRI | GGCC | 2 cut(s) | 29, 132 |
| BtgI | CCRYGG | 1 cut(s) | 150 |
| BtsIMutI | CAGTG | 1 cut(s) | 289 |
| BveI | ACCTGC | 1 cut(s) | 240 |
| Cac8I | GCNNGC | 3 cut(s) | 186, 296, 477 |
| CfoI | GCGC | 1 cut(s) | 251 |
| Cfr13I | GGNCC | 4 cut(s) | 130, 229, 374, 396 |
| CseI | GACGC | 2 cut(s) | 258, 424 |
| Csp6I | GTAC | 1 cut(s) | 456 |
| CviAII | CATG | 2 cut(s) | 151, 434 |
| CviQI | GTAC | 1 cut(s) | 456 |
| DdeI | CTNAG | 2 cut(s) | 195, 480 |
| DinI | GGCGCC | 1 cut(s) | 250 |
| DpnI | GATC | 1 cut(s) | 50 |
| DpnII | GATC | 1 cut(s) | 48 |
| EaeI | YGGCCR | 1 cut(s) | 27 |
| EciI | GGCGGA | 2 cut(s) | 268, 366 |
| Eco130I | CCWWGG | 2 cut(s) | 30, 150 |
| Eco24I | GRGCYC | 1 cut(s) | 425 |
| Eco47I | GGWCC | 3 cut(s) | 229, 374, 396 |
| Eco57I | CTGAAG | 2 cut(s) | 38, 107 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 56, 194 |
| EcoT14I | CCWWGG | 2 cut(s) | 30, 150 |
| EcoT38I | GRGCYC | 1 cut(s) | 425 |
| EgeI | GGCGCC | 1 cut(s) | 250 |
| EheI | GGCGCC | 1 cut(s) | 250 |
| ErhI | CCWWGG | 2 cut(s) | 30, 150 |
| FaeI | CATG | 2 cut(s) | 154, 437 |
| FaiI | YATR | 5 cut(s) | 152, 178, 180, 372, 435 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 95, 127 |
| FaqI | GGGAC | 1 cut(s) | 256 |
| FatI | CATG | 2 cut(s) | 150, 433 |
| FblI | GTMKAC | 1 cut(s) | 65 |
| Fnu4HI | GCNGC | 9 cut(s) | 27, 201, 216, 219, 299, 324, 327, 473, 501 |
| FriOI | GRGCYC | 1 cut(s) | 425 |
| Fsp4HI | GCNGC | 9 cut(s) | 27, 201, 216, 219, 299, 324, 327, 473, 501 |
| FspBI | CTAG | 1 cut(s) | 308 |
| GlaI | GCGC | 1 cut(s) | 250 |
| GluI | GCNGC | 9 cut(s) | 27, 201, 216, 219, 299, 324, 327, 473, 501 |
| GsaI | CCCAGC | 2 cut(s) | 119, 394 |
| GsuI | CTGGAG | 1 cut(s) | 357 |
| HaeII | RGCGCY | 1 cut(s) | 252 |
| HaeIII | GGCC | 2 cut(s) | 29, 132 |
| HapII | CCGG | 1 cut(s) | 380 |
| HgaI | GACGC | 2 cut(s) | 258, 424 |
| HhaI | GCGC | 1 cut(s) | 251 |
| Hin1I | GRCGYC | 2 cut(s) | 249, 416 |
| Hin1II | CATG | 2 cut(s) | 154, 437 |
| Hin6I | GCGC | 1 cut(s) | 249 |
| HinP1I | GCGC | 1 cut(s) | 249 |
| HinfI | GANTC | 3 cut(s) | 62, 155, 386 |
| HpaII | CCGG | 1 cut(s) | 380 |
| HphI | GGTGA | 2 cut(s) | 134, 497 |
| Hpy166II | GTNNAC | 2 cut(s) | 66, 488 |
| Hpy188I | TCNGA | 1 cut(s) | 442 |
| Hpy188III | TCNNGA | 1 cut(s) | 137 |
| Hpy8I | GTNNAC | 2 cut(s) | 66, 488 |
| HpyAV | CCTTC | 6 cut(s) | 34, 62, 121, 169, 199, 238 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 346 |
| HpyCH4V | TGCA | 1 cut(s) | 323 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 206, 215, 304 |
| HpyF3I | CTNAG | 2 cut(s) | 195, 480 |
| HpySE526I | ACGT | 1 cut(s) | 346 |
| Hsp92I | GRCGYC | 2 cut(s) | 249, 416 |
| Hsp92II | CATG | 2 cut(s) | 154, 437 |
| HspAI | GCGC | 1 cut(s) | 249 |
| KasI | GGCGCC | 1 cut(s) | 248 |
| Kzo9I | GATC | 1 cut(s) | 48 |
| LmnI | GCTCC | 4 cut(s) | 16, 82, 443, 508 |
| Lsp1109I | GCAGC | 4 cut(s) | 205, 313, 335, 487 |
| MaeI | CTAG | 1 cut(s) | 308 |
| MaeII | ACGT | 1 cut(s) | 346 |
| MaeIII | GTNAC | 2 cut(s) | 340, 356 |
| MalI | GATC | 1 cut(s) | 50 |
| MboI | GATC | 1 cut(s) | 48 |
| MboII | GAAGA | 1 cut(s) | 100 |
| MflI | RGATCY | 1 cut(s) | 48 |
| MhlI | GDGCHC | 1 cut(s) | 425 |
| MluCI | AATT | 1 cut(s) | 223 |
| Mly113I | GGCGCC | 1 cut(s) | 249 |
| MlyI | GAGTC | 2 cut(s) | 71, 380 |
| MmeI | TCCRAC | 2 cut(s) | 75, 465 |
| MnlI | CCTC | 5 cut(s) | 73, 91, 113, 190, 475 |
| MseI | TTAA | 2 cut(s) | 11, 255 |
| MspA1I | CMGCKG | 3 cut(s) | 326, 394, 479 |
| MspI | CCGG | 1 cut(s) | 380 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 206, 215, 304 |
| NarI | GGCGCC | 1 cut(s) | 249 |
| NcoI | CCATGG | 1 cut(s) | 150 |
| NdeII | GATC | 1 cut(s) | 48 |
| NlaIII | CATG | 2 cut(s) | 154, 437 |
| NlaIV | GGNNCC | 3 cut(s) | 250, 398, 439 |
| NmeAIII | GCCGAG | 1 cut(s) | 444 |
| NmuCI | GTSAC | 1 cut(s) | 356 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PkrI | GCNGC | 9 cut(s) | 28, 202, 217, 220, 300, 325, 328, 474, 502 |
| PleI | GAGTC | 2 cut(s) | 70, 380 |
| PluTI | GGCGCC | 1 cut(s) | 252 |
| PpsI | GAGTC | 2 cut(s) | 70, 380 |
| PspFI | CCCAGC | 2 cut(s) | 115, 390 |
| PspN4I | GGNNCC | 3 cut(s) | 250, 398, 439 |
| PspPI | GGNCC | 4 cut(s) | 130, 229, 374, 396 |
| PsuI | RGATCY | 1 cut(s) | 48 |
| PvuII | CAGCTG | 2 cut(s) | 326, 479 |
| RsaI | GTAC | 1 cut(s) | 457 |
| RsaNI | GTAC | 1 cut(s) | 456 |
| SaqAI | TTAA | 2 cut(s) | 11, 255 |
| SatI | GCNGC | 9 cut(s) | 27, 201, 216, 219, 299, 324, 327, 473, 501 |
| Sau3AI | GATC | 1 cut(s) | 48 |
| Sau96I | GGNCC | 4 cut(s) | 130, 229, 374, 396 |
| SchI | GAGTC | 2 cut(s) | 71, 380 |
| SduI | GDGCHC | 1 cut(s) | 425 |
| SetI | ASST | 8 cut(s) | 45, 87, 108, 124, 234, 328, 349, 481 |
| SfoI | GGCGCC | 1 cut(s) | 250 |
| SinI | GGWCC | 3 cut(s) | 229, 374, 396 |
| Sse9I | AATT | 1 cut(s) | 223 |
| SspDI | GGCGCC | 1 cut(s) | 248 |
| SspMI | CTAG | 1 cut(s) | 308 |
| StyI | CCWWGG | 2 cut(s) | 30, 150 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 349 |
| TasI | AATT | 1 cut(s) | 223 |
| TauI | GCSGC | 5 cut(s) | 29, 203, 218, 301, 475 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| Tru1I | TTAA | 2 cut(s) | 11, 255 |
| Tru9I | TTAA | 2 cut(s) | 11, 255 |
| TscAI | CASTG | 1 cut(s) | 289 |
| TseFI | GTSAC | 1 cut(s) | 356 |
| TseI | GCWGC | 4 cut(s) | 218, 323, 326, 500 |
| Tsp45I | GTSAC | 1 cut(s) | 356 |
| TspRI | CASTG | 1 cut(s) | 289 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| VpaK11BI | GGWCC | 3 cut(s) | 229, 374, 396 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 56, 194 |
| XmiI | GTMKAC | 1 cut(s) | 65 |
| XspI | CTAG | 1 cut(s) | 308 |