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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 321 |
| AccB1I | GGYRCC | 3 cut(s) | 293, 329, 542 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 339 |
| AccBSI | CCGCTC | 2 cut(s) | 536, 569 |
| AccII | CGCG | 2 cut(s) | 216, 507 |
| AclWI | GGATC | 5 cut(s) | 105, 124, 272, 285, 381 |
| AcoI | YGGCCR | 1 cut(s) | 519 |
| AcuI | CTGAAG | 2 cut(s) | 113, 516 |
| AcyI | GRCGYC | 1 cut(s) | 554 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 36, 94, 139, 220, 339, 617, 620 |
| AgsI | TTSAA | 1 cut(s) | 244 |
| AjnI | CCWGG | 1 cut(s) | 594 |
| AluBI | AGCT | 3 cut(s) | 19, 203, 413 |
| AluI | AGCT | 3 cut(s) | 19, 203, 413 |
| Alw26I | GTCTC | 2 cut(s) | 31, 67 |
| AlwI | GGATC | 5 cut(s) | 105, 124, 272, 285, 381 |
| Ama87I | CYCGRG | 1 cut(s) | 44 |
| AoxI | GGCC | 3 cut(s) | 222, 365, 519 |
| ApeKI | GCWGC | 1 cut(s) | 299 |
| AspLEI | GCGC | 2 cut(s) | 218, 509 |
| AspS9I | GGNCC | 4 cut(s) | 40, 310, 351, 365 |
| AsuHPI | GGTGA | 5 cut(s) | 178, 295, 355, 458, 635 |
| AvaI | CYCGRG | 1 cut(s) | 44 |
| AvaII | GGWCC | 3 cut(s) | 40, 310, 351 |
| BamHI | GGATCC | 1 cut(s) | 277 |
| BanI | GGYRCC | 3 cut(s) | 293, 329, 542 |
| BanII | GRGCYC | 1 cut(s) | 563 |
| BauI | CACGAG | 1 cut(s) | 388 |
| BbvCI | CCTCAGC | 1 cut(s) | 162 |
| BbvI | GCAGC | 1 cut(s) | 286 |
| BccI | CCATC | 2 cut(s) | 268, 533 |
| BceAI | ACGGC | 1 cut(s) | 352 |
| BciT130I | CCWGG | 1 cut(s) | 596 |
| BclI | TGATCA | 1 cut(s) | 580 |
| BcoDI | GTCTC | 2 cut(s) | 31, 67 |
| BfaI | CTAG | 1 cut(s) | 531 |
| BfmI | CTRYAG | 1 cut(s) | 231 |
| BfuAI | ACCTGC | 1 cut(s) | 321 |
| BglII | AGATCT | 1 cut(s) | 575 |
| BisI | GCNGC | 4 cut(s) | 225, 297, 300, 522 |
| BlpI | GCTNAGC | 1 cut(s) | 33 |
| BlsI | GCNGC | 4 cut(s) | 226, 298, 301, 523 |
| Bme1390I | CCNGG | 1 cut(s) | 596 |
| Bme18I | GGWCC | 3 cut(s) | 40, 310, 351 |
| BmeT110I | CYCGRG | 1 cut(s) | 44 |
| BmgT120I | GGNCC | 4 cut(s) | 40, 310, 351, 365 |
| BmiI | GGNNCC | 8 cut(s) | 41, 279, 295, 331, 352, 353, 402, 544 |
| BmrFI | CCNGG | 1 cut(s) | 596 |
| BmrI | ACTGGG | 1 cut(s) | 349 |
| BmuI | ACTGGG | 1 cut(s) | 349 |
| BpmI | CTGGAG | 2 cut(s) | 119, 197 |
| Bpu10I | CCTNAGC | 2 cut(s) | 111, 162 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 33 |
| BpuEI | CTTGAG | 2 cut(s) | 393, 629 |
| BsaHI | GRCGYC | 1 cut(s) | 554 |
| BsaJI | CCNNGG | 1 cut(s) | 10 |
| BsaWI | WCCGGW | 1 cut(s) | 280 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 36, 94, 139, 220, 339, 617, 620 |
| Bse1I | ACTGG | 1 cut(s) | 344 |
| Bse3DI | GCAATG | 1 cut(s) | 276 |
| BseBI | CCWGG | 1 cut(s) | 596 |
| BseDI | CCNNGG | 1 cut(s) | 10 |
| BseGI | GGATG | 1 cut(s) | 544 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 36, 94, 139, 220, 339, 617, 620 |
| BseMI | GCAATG | 1 cut(s) | 276 |
| BseMII | CTCAG | 2 cut(s) | 153, 482 |
| BseNI | ACTGG | 1 cut(s) | 344 |
| BseXI | GCAGC | 1 cut(s) | 286 |
| BseYI | CCCAGC | 3 cut(s) | 413, 599, 616 |
| Bsh1236I | CGCG | 2 cut(s) | 216, 507 |
| BshFI | GGCC | 3 cut(s) | 224, 367, 521 |
| BshNI | GGYRCC | 3 cut(s) | 293, 329, 542 |
| BsiHKCI | CYCGRG | 1 cut(s) | 44 |
| BsiSI | CCGG | 1 cut(s) | 281 |
| BslFI | GGGAC | 2 cut(s) | 53, 337 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 36, 94, 139, 220, 339, 617, 620 |
| BsmAI | GTCTC | 2 cut(s) | 31, 67 |
| BsmFI | GGGAC | 2 cut(s) | 53, 337 |
| BsmI | GAATGC | 1 cut(s) | 239 |
| BsnI | GGCC | 3 cut(s) | 224, 367, 521 |
| BsoBI | CYCGRG | 1 cut(s) | 44 |
| Bsp1286I | GDGCHC | 1 cut(s) | 563 |
| Bsp143I | GATC | 6 cut(s) | 97, 129, 277, 373, 575, 580 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 33 |
| Bsp19I | CCATGG | 1 cut(s) | 10 |
| BspANI | GGCC | 3 cut(s) | 224, 367, 521 |
| BspCNI | CTCAG | 2 cut(s) | 154, 481 |
| BspFNI | CGCG | 2 cut(s) | 216, 507 |
| BspLI | GGNNCC | 8 cut(s) | 41, 279, 295, 331, 352, 353, 402, 544 |
| BspMI | ACCTGC | 1 cut(s) | 321 |
| BspPI | GGATC | 5 cut(s) | 105, 124, 272, 285, 381 |
| BspT107I | GGYRCC | 3 cut(s) | 293, 329, 542 |
| BsrBI | CCGCTC | 2 cut(s) | 536, 569 |
| BsrDI | GCAATG | 1 cut(s) | 276 |
| BsrI | ACTGG | 1 cut(s) | 344 |
| BssECI | CCNNGG | 1 cut(s) | 10 |
| BssMI | GATC | 6 cut(s) | 97, 129, 277, 373, 575, 580 |
| BssNI | GRCGYC | 1 cut(s) | 554 |
| BssSI | CACGAG | 1 cut(s) | 388 |
| BssT1I | CCWWGG | 1 cut(s) | 10 |
| Bst2BI | CACGAG | 1 cut(s) | 388 |
| Bst2UI | CCWGG | 1 cut(s) | 596 |
| Bst4CI | ACNGT | 2 cut(s) | 232, 452 |
| Bst6I | CTCTTC | 1 cut(s) | 164 |
| BstACI | GRCGYC | 1 cut(s) | 554 |
| BstC8I | GCNNGC | 1 cut(s) | 17 |
| BstDEI | CTNAG | 5 cut(s) | 33, 111, 162, 204, 468 |
| BstDSI | CCRYGG | 1 cut(s) | 10 |
| BstEII | GGTNACC | 1 cut(s) | 446 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 92 |
| BstF5I | GGATG | 1 cut(s) | 544 |
| BstFNI | CGCG | 2 cut(s) | 216, 507 |
| BstHHI | GCGC | 2 cut(s) | 218, 509 |
| BstKTI | GATC | 6 cut(s) | 100, 132, 280, 376, 578, 583 |
| BstMAI | GTCTC | 2 cut(s) | 31, 67 |
| BstMBI | GATC | 6 cut(s) | 97, 129, 277, 373, 575, 580 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 158, 224, 296 |
| BstNI | CCWGG | 1 cut(s) | 596 |
| BstPI | GGTNACC | 1 cut(s) | 446 |
| BstSCI | CCNGG | 1 cut(s) | 594 |
| BstSFI | CTRYAG | 1 cut(s) | 231 |
| BstUI | CGCG | 2 cut(s) | 216, 507 |
| BstV1I | GCAGC | 1 cut(s) | 286 |
| BstX2I | RGATCY | 3 cut(s) | 129, 277, 575 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 599 |
| BstYI | RGATCY | 3 cut(s) | 129, 277, 575 |
| BsuRI | GGCC | 3 cut(s) | 224, 367, 521 |
| BtgI | CCRYGG | 1 cut(s) | 10 |
| BtsCI | GGATG | 1 cut(s) | 544 |
| BtsI | GCAGTG | 1 cut(s) | 400 |
| BtsIMutI | CAGTG | 2 cut(s) | 228, 400 |
| BveI | ACCTGC | 1 cut(s) | 321 |
| Cac8I | GCNNGC | 1 cut(s) | 17 |
| CfoI | GCGC | 2 cut(s) | 218, 509 |
| Cfr13I | GGNCC | 4 cut(s) | 40, 310, 351, 365 |
| CseI | GACGC | 1 cut(s) | 562 |
| CviAII | CATG | 4 cut(s) | 11, 59, 517, 547 |
| DdeI | CTNAG | 5 cut(s) | 33, 111, 162, 204, 468 |
| DpnI | GATC | 6 cut(s) | 99, 131, 279, 375, 577, 582 |
| DpnII | GATC | 6 cut(s) | 97, 129, 277, 373, 575, 580 |
| EaeI | YGGCCR | 1 cut(s) | 519 |
| Eam1104I | CTCTTC | 1 cut(s) | 164 |
| EarI | CTCTTC | 1 cut(s) | 164 |
| Eco130I | CCWWGG | 1 cut(s) | 10 |
| Eco24I | GRGCYC | 1 cut(s) | 563 |
| Eco47I | GGWCC | 3 cut(s) | 40, 310, 351 |
| Eco57I | CTGAAG | 2 cut(s) | 113, 516 |
| Eco88I | CYCGRG | 1 cut(s) | 44 |
| Eco91I | GGTNACC | 1 cut(s) | 446 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 92 |
| EcoO109I | RGGNCCY | 2 cut(s) | 40, 351 |
| EcoO65I | GGTNACC | 1 cut(s) | 446 |
| EcoRII | CCWGG | 1 cut(s) | 594 |
| EcoT14I | CCWWGG | 1 cut(s) | 10 |
| EcoT38I | GRGCYC | 1 cut(s) | 563 |
| ErhI | CCWWGG | 1 cut(s) | 10 |
| FaeI | CATG | 4 cut(s) | 14, 62, 520, 550 |
| FaiI | YATR | 8 cut(s) | 12, 60, 83, 261, 518, 528, 548, 573 |
| FaqI | GGGAC | 2 cut(s) | 53, 337 |
| FatI | CATG | 4 cut(s) | 10, 58, 516, 546 |
| FauI | CCCGC | 4 cut(s) | 30, 132, 372, 512 |
| FbaI | TGATCA | 1 cut(s) | 580 |
| Fnu4HI | GCNGC | 4 cut(s) | 225, 297, 300, 522 |
| FokI | GGATG | 1 cut(s) | 551 |
| FriOI | GRGCYC | 1 cut(s) | 563 |
| Fsp4HI | GCNGC | 4 cut(s) | 225, 297, 300, 522 |
| FspBI | CTAG | 1 cut(s) | 531 |
| GlaI | GCGC | 2 cut(s) | 217, 508 |
| GluI | GCNGC | 4 cut(s) | 225, 297, 300, 522 |
| GsaI | CCCAGC | 3 cut(s) | 417, 603, 620 |
| GsuI | CTGGAG | 2 cut(s) | 119, 197 |
| HaeIII | GGCC | 3 cut(s) | 224, 367, 521 |
| HapII | CCGG | 1 cut(s) | 281 |
| HgaI | GACGC | 1 cut(s) | 562 |
| HhaI | GCGC | 2 cut(s) | 218, 509 |
| Hin1I | GRCGYC | 1 cut(s) | 554 |
| Hin1II | CATG | 4 cut(s) | 14, 62, 520, 550 |
| Hin6I | GCGC | 2 cut(s) | 216, 507 |
| HinP1I | GCGC | 2 cut(s) | 216, 507 |
| HinfI | GANTC | 4 cut(s) | 143, 464, 475, 649 |
| HpaII | CCGG | 1 cut(s) | 281 |
| HphI | GGTGA | 5 cut(s) | 178, 295, 355, 458, 635 |
| Hpy188I | TCNGA | 5 cut(s) | 373, 456, 496, 580, 585 |
| Hpy188III | TCNNGA | 2 cut(s) | 388, 646 |
| Hpy99I | CGWCG | 1 cut(s) | 373 |
| HpyAV | CCTTC | 2 cut(s) | 88, 280 |
| HpyCH4III | ACNGT | 2 cut(s) | 232, 452 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 158, 224, 296 |
| HpyF3I | CTNAG | 5 cut(s) | 33, 111, 162, 204, 468 |
| Hsp92I | GRCGYC | 1 cut(s) | 554 |
| Hsp92II | CATG | 4 cut(s) | 14, 62, 520, 550 |
| HspAI | GCGC | 2 cut(s) | 216, 507 |
| KflI | GGGWCCC | 1 cut(s) | 351 |
| Ksp22I | TGATCA | 1 cut(s) | 580 |
| Kzo9I | GATC | 6 cut(s) | 97, 129, 277, 373, 575, 580 |
| Lsp1109I | GCAGC | 1 cut(s) | 286 |
| MaeI | CTAG | 1 cut(s) | 531 |
| MaeIII | GTNAC | 1 cut(s) | 446 |
| MalI | GATC | 6 cut(s) | 99, 131, 279, 375, 577, 582 |
| MbiI | CCGCTC | 2 cut(s) | 536, 569 |
| MboI | GATC | 6 cut(s) | 97, 129, 277, 373, 575, 580 |
| MboII | GAAGA | 2 cut(s) | 138, 181 |
| MflI | RGATCY | 3 cut(s) | 129, 277, 575 |
| MhlI | GDGCHC | 1 cut(s) | 563 |
| MluCI | AATT | 1 cut(s) | 304 |
| MmeI | TCCRAC | 2 cut(s) | 351, 479 |
| MnlI | CCTC | 9 cut(s) | 53, 143, 157, 165, 172, 178, 214, 229, 492 |
| MslI | CAYNNNNRTG | 1 cut(s) | 548 |
| MspA1I | CMGCKG | 5 cut(s) | 139, 299, 379, 472, 616 |
| MspI | CCGG | 1 cut(s) | 281 |
| MspR9I | CCNGG | 1 cut(s) | 596 |
| Mva1269I | GAATGC | 1 cut(s) | 239 |
| MvaI | CCWGG | 1 cut(s) | 596 |
| MvnI | CGCG | 2 cut(s) | 216, 507 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 158, 224, 296 |
| NcoI | CCATGG | 1 cut(s) | 10 |
| NdeII | GATC | 6 cut(s) | 97, 129, 277, 373, 575, 580 |
| NlaIII | CATG | 4 cut(s) | 14, 62, 520, 550 |
| NlaIV | GGNNCC | 8 cut(s) | 41, 279, 295, 331, 352, 353, 402, 544 |
| NmeAIII | GCCGAG | 1 cut(s) | 582 |
| NmuCI | GTSAC | 1 cut(s) | 446 |
| PaeR7I | CTCGAG | 1 cut(s) | 44 |
| PctI | GAATGC | 1 cut(s) | 239 |
| PfeI | GAWTC | 4 cut(s) | 143, 464, 475, 649 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 339 |
| PkrI | GCNGC | 4 cut(s) | 226, 298, 301, 523 |
| PpuMI | RGGWCCY | 2 cut(s) | 40, 351 |
| Psp5II | RGGWCCY | 2 cut(s) | 40, 351 |
| Psp6I | CCWGG | 1 cut(s) | 594 |
| PspEI | GGTNACC | 1 cut(s) | 446 |
| PspFI | CCCAGC | 3 cut(s) | 413, 599, 616 |
| PspGI | CCWGG | 1 cut(s) | 594 |
| PspN4I | GGNNCC | 8 cut(s) | 41, 279, 295, 331, 352, 353, 402, 544 |
| PspPI | GGNCC | 4 cut(s) | 40, 310, 351, 365 |
| PspPPI | RGGWCCY | 2 cut(s) | 40, 351 |
| PspXI | VCTCGAGB | 1 cut(s) | 44 |
| PsuI | RGATCY | 3 cut(s) | 129, 277, 575 |
| RseI | CAYNNNNRTG | 1 cut(s) | 548 |
| SatI | GCNGC | 4 cut(s) | 225, 297, 300, 522 |
| Sau3AI | GATC | 6 cut(s) | 97, 129, 277, 373, 575, 580 |
| Sau96I | GGNCC | 4 cut(s) | 40, 310, 351, 365 |
| ScrFI | CCNGG | 1 cut(s) | 596 |
| SduI | GDGCHC | 1 cut(s) | 563 |
| SetI | ASST | 9 cut(s) | 21, 45, 168, 189, 205, 315, 415, 484, 597 |
| SfcI | CTRYAG | 1 cut(s) | 231 |
| Sfr274I | CTCGAG | 1 cut(s) | 44 |
| SinI | GGWCC | 3 cut(s) | 40, 310, 351 |
| SlaI | CTCGAG | 1 cut(s) | 44 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 548 |
| SmlI | CTYRAG | 3 cut(s) | 44, 408, 644 |
| SmoI | CTYRAG | 3 cut(s) | 44, 408, 644 |
| Sse9I | AATT | 1 cut(s) | 304 |
| SspMI | CTAG | 1 cut(s) | 531 |
| StyD4I | CCNGG | 1 cut(s) | 594 |
| StyI | CCWWGG | 1 cut(s) | 10 |
| TaaI | ACNGT | 2 cut(s) | 232, 452 |
| TaqI | TCGA | 1 cut(s) | 45 |
| TasI | AATT | 1 cut(s) | 304 |
| TauI | GCSGC | 3 cut(s) | 227, 299, 524 |
| TfiI | GAWTC | 4 cut(s) | 143, 464, 475, 649 |
| TscAI | CASTG | 2 cut(s) | 235, 400 |
| TseFI | GTSAC | 1 cut(s) | 446 |
| TseI | GCWGC | 1 cut(s) | 299 |
| Tsp45I | GTSAC | 1 cut(s) | 446 |
| TspDTI | ATGAA | 2 cut(s) | 17, 505 |
| TspRI | CASTG | 2 cut(s) | 235, 400 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 339 |
| VpaK11BI | GGWCC | 3 cut(s) | 40, 310, 351 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 92 |
| XhoI | CTCGAG | 1 cut(s) | 44 |
| XspI | CTAG | 1 cut(s) | 531 |