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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 5 cut(s) | 193, 232, 234, 264, 272 |
| AciI | CCGC | 5 cut(s) | 53, 105, 180, 262, 264 |
| AclWI | GGATC | 2 cut(s) | 253, 266 |
| AcsI | RAATTY | 2 cut(s) | 65, 154 |
| AcyI | GRCGYC | 1 cut(s) | 22 |
| AflII | CTTAAG | 1 cut(s) | 8 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AleI | CACNNNNGTG | 1 cut(s) | 207 |
| AluBI | AGCT | 1 cut(s) | 249 |
| AluI | AGCT | 1 cut(s) | 249 |
| AlwI | GGATC | 2 cut(s) | 253, 266 |
| AoxI | GGCC | 1 cut(s) | 135 |
| ApaI | GGGCCC | 1 cut(s) | 139 |
| ApeKI | GCWGC | 2 cut(s) | 102, 246 |
| ApoI | RAATTY | 2 cut(s) | 65, 154 |
| AspLEI | GCGC | 3 cut(s) | 7, 93, 234 |
| AspS9I | GGNCC | 3 cut(s) | 41, 135, 136 |
| AsuC2I | CCSGG | 2 cut(s) | 131, 177 |
| AvaII | GGWCC | 1 cut(s) | 41 |
| BaeGI | GKGCMC | 1 cut(s) | 139 |
| BamHI | GGATCC | 1 cut(s) | 258 |
| BanII | GRGCYC | 1 cut(s) | 139 |
| BbvI | GCAGC | 2 cut(s) | 114, 258 |
| BcnI | CCSGG | 2 cut(s) | 131, 177 |
| BfoI | RGCGCY | 2 cut(s) | 8, 94 |
| BfrI | CTTAAG | 1 cut(s) | 8 |
| BisI | GCNGC | 3 cut(s) | 103, 247, 265 |
| BlsI | GCNGC | 3 cut(s) | 104, 248, 266 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 177 |
| Bme18I | GGWCC | 1 cut(s) | 41 |
| BmgT120I | GGNCC | 3 cut(s) | 41, 135, 136 |
| BmiI | GGNNCC | 7 cut(s) | 42, 43, 136, 137, 138, 186, 260 |
| BmrFI | CCNGG | 2 cut(s) | 131, 177 |
| BmsI | GCATC | 1 cut(s) | 89 |
| BpuMI | CCSGG | 2 cut(s) | 131, 177 |
| BsaAI | YACGTR | 1 cut(s) | 85 |
| BsaHI | GRCGYC | 1 cut(s) | 22 |
| BsaJI | CCNNGG | 4 cut(s) | 45, 94, 130, 262 |
| BsaWI | WCCGGW | 1 cut(s) | 29 |
| Bse118I | RCCGGY | 1 cut(s) | 204 |
| BseDI | CCNNGG | 4 cut(s) | 45, 94, 130, 262 |
| BseGI | GGATG | 1 cut(s) | 104 |
| BseSI | GKGCMC | 1 cut(s) | 139 |
| BseXI | GCAGC | 2 cut(s) | 114, 258 |
| BsgI | GTGCAG | 1 cut(s) | 265 |
| Bsh1236I | CGCG | 5 cut(s) | 193, 232, 234, 264, 272 |
| BshFI | GGCC | 1 cut(s) | 137 |
| BsiSI | CCGG | 4 cut(s) | 30, 130, 177, 205 |
| BslFI | GGGAC | 1 cut(s) | 27 |
| BsmFI | GGGAC | 1 cut(s) | 27 |
| BsnI | GGCC | 1 cut(s) | 137 |
| Bsp120I | GGGCCC | 1 cut(s) | 135 |
| Bsp1286I | GDGCHC | 1 cut(s) | 139 |
| Bsp143I | GATC | 2 cut(s) | 147, 258 |
| BspACI | CCGC | 5 cut(s) | 53, 105, 180, 262, 264 |
| BspANI | GGCC | 1 cut(s) | 137 |
| BspFNI | CGCG | 5 cut(s) | 193, 232, 234, 264, 272 |
| BspLI | GGNNCC | 7 cut(s) | 42, 43, 136, 137, 138, 186, 260 |
| BspPI | GGATC | 2 cut(s) | 253, 266 |
| BspTI | CTTAAG | 1 cut(s) | 8 |
| BsrFI | RCCGGY | 1 cut(s) | 204 |
| BssAI | RCCGGY | 1 cut(s) | 204 |
| BssECI | CCNNGG | 4 cut(s) | 45, 94, 130, 262 |
| BssMI | GATC | 2 cut(s) | 147, 258 |
| BssNI | GRCGYC | 1 cut(s) | 22 |
| BssT1I | CCWWGG | 1 cut(s) | 94 |
| Bst4CI | ACNGT | 1 cut(s) | 49 |
| Bst6I | CTCTTC | 1 cut(s) | 234 |
| BstACI | GRCGYC | 1 cut(s) | 22 |
| BstAFI | CTTAAG | 1 cut(s) | 8 |
| BstBAI | YACGTR | 1 cut(s) | 85 |
| BstC8I | GCNNGC | 2 cut(s) | 107, 210 |
| BstDEI | CTNAG | 1 cut(s) | 119 |
| BstDSI | CCRYGG | 2 cut(s) | 45, 262 |
| BstF5I | GGATG | 1 cut(s) | 104 |
| BstFNI | CGCG | 5 cut(s) | 193, 232, 234, 264, 272 |
| BstH2I | RGCGCY | 2 cut(s) | 8, 94 |
| BstHHI | GCGC | 3 cut(s) | 7, 93, 234 |
| BstKTI | GATC | 2 cut(s) | 150, 261 |
| BstMBI | GATC | 2 cut(s) | 147, 258 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 99, 214 |
| BstSCI | CCNGG | 2 cut(s) | 129, 175 |
| BstSLI | GKGCMC | 1 cut(s) | 139 |
| BstUI | CGCG | 5 cut(s) | 193, 232, 234, 264, 272 |
| BstV1I | GCAGC | 2 cut(s) | 114, 258 |
| BstX2I | RGATCY | 1 cut(s) | 258 |
| BstYI | RGATCY | 1 cut(s) | 258 |
| BsuRI | GGCC | 1 cut(s) | 137 |
| BtgI | CCRYGG | 2 cut(s) | 45, 262 |
| BtsCI | GGATG | 1 cut(s) | 104 |
| Cac8I | GCNNGC | 2 cut(s) | 107, 210 |
| CfoI | GCGC | 3 cut(s) | 7, 93, 234 |
| Cfr10I | RCCGGY | 1 cut(s) | 204 |
| Cfr13I | GGNCC | 3 cut(s) | 41, 135, 136 |
| Cfr42I | CCGCGG | 1 cut(s) | 265 |
| CseI | GACGC | 2 cut(s) | 11, 238 |
| CviJI | RGCY | 3 cut(s) | 137, 249, 267 |
| CviKI_1 | RGCY | 3 cut(s) | 137, 249, 267 |
| DdeI | CTNAG | 1 cut(s) | 119 |
| DpnI | GATC | 2 cut(s) | 149, 260 |
| DpnII | GATC | 2 cut(s) | 147, 258 |
| Eam1104I | CTCTTC | 1 cut(s) | 234 |
| EarI | CTCTTC | 1 cut(s) | 234 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 1 cut(s) | 94 |
| Eco24I | GRGCYC | 1 cut(s) | 139 |
| Eco47I | GGWCC | 1 cut(s) | 41 |
| EcoO109I | RGGNCCY | 3 cut(s) | 41, 135, 136 |
| EcoRI | GAATTC | 1 cut(s) | 65 |
| EcoT14I | CCWWGG | 1 cut(s) | 94 |
| EcoT38I | GRGCYC | 1 cut(s) | 139 |
| ErhI | CCWWGG | 1 cut(s) | 94 |
| FaiI | YATR | 2 cut(s) | 19, 222 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 102, 134 |
| FaqI | GGGAC | 1 cut(s) | 27 |
| FauI | CCCGC | 2 cut(s) | 98, 173 |
| Fnu4HI | GCNGC | 3 cut(s) | 103, 247, 265 |
| FokI | GGATG | 1 cut(s) | 111 |
| FriOI | GRGCYC | 1 cut(s) | 139 |
| Fsp4HI | GCNGC | 3 cut(s) | 103, 247, 265 |
| GlaI | GCGC | 3 cut(s) | 6, 92, 233 |
| GluI | GCNGC | 3 cut(s) | 103, 247, 265 |
| HaeII | RGCGCY | 2 cut(s) | 8, 94 |
| HaeIII | GGCC | 1 cut(s) | 137 |
| HapII | CCGG | 4 cut(s) | 30, 130, 177, 205 |
| HgaI | GACGC | 2 cut(s) | 11, 238 |
| HhaI | GCGC | 3 cut(s) | 7, 93, 234 |
| Hin1I | GRCGYC | 1 cut(s) | 22 |
| Hin6I | GCGC | 3 cut(s) | 5, 91, 232 |
| HinP1I | GCGC | 3 cut(s) | 5, 91, 232 |
| HinfI | GANTC | 2 cut(s) | 115, 164 |
| HpaII | CCGG | 4 cut(s) | 30, 130, 177, 205 |
| Hpy166II | GTNNAC | 1 cut(s) | 82 |
| Hpy188III | TCNNGA | 1 cut(s) | 151 |
| Hpy8I | GTNNAC | 1 cut(s) | 82 |
| Hpy99I | CGWCG | 2 cut(s) | 129, 232 |
| HpyAV | CCTTC | 2 cut(s) | 154, 198 |
| HpyCH4III | ACNGT | 1 cut(s) | 49 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 2 cut(s) | 102, 246 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 99, 214 |
| HpyF3I | CTNAG | 1 cut(s) | 119 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| Hsp92I | GRCGYC | 1 cut(s) | 22 |
| HspAI | GCGC | 3 cut(s) | 5, 91, 232 |
| KflI | GGGWCCC | 1 cut(s) | 41 |
| KspI | CCGCGG | 1 cut(s) | 265 |
| Kzo9I | GATC | 2 cut(s) | 147, 258 |
| LpnPI | CCDG | 5 cut(s) | 43, 47, 143, 190, 218 |
| Lsp1109I | GCAGC | 2 cut(s) | 114, 258 |
| LweI | GCATC | 1 cut(s) | 89 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MaeIII | GTNAC | 1 cut(s) | 12 |
| MalI | GATC | 2 cut(s) | 149, 260 |
| MboI | GATC | 2 cut(s) | 147, 258 |
| MboII | GAAGA | 1 cut(s) | 251 |
| MflI | RGATCY | 1 cut(s) | 258 |
| MhlI | GDGCHC | 1 cut(s) | 139 |
| MluCI | AATT | 2 cut(s) | 65, 154 |
| MnlI | CCTC | 4 cut(s) | 31, 49, 223, 229 |
| MseI | TTAA | 1 cut(s) | 9 |
| MslI | CAYNNNNRTG | 1 cut(s) | 207 |
| MspA1I | CMGCKG | 2 cut(s) | 105, 264 |
| MspCI | CTTAAG | 1 cut(s) | 8 |
| MspI | CCGG | 4 cut(s) | 30, 130, 177, 205 |
| MspR9I | CCNGG | 2 cut(s) | 131, 177 |
| MvnI | CGCG | 5 cut(s) | 193, 232, 234, 264, 272 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 99, 214 |
| NciI | CCSGG | 2 cut(s) | 131, 177 |
| NdeII | GATC | 2 cut(s) | 147, 258 |
| NlaIV | GGNNCC | 7 cut(s) | 42, 43, 136, 137, 138, 186, 260 |
| NmuCI | GTSAC | 1 cut(s) | 12 |
| OliI | CACNNNNGTG | 1 cut(s) | 207 |
| PfeI | GAWTC | 2 cut(s) | 115, 164 |
| PkrI | GCNGC | 3 cut(s) | 104, 248, 266 |
| Ppu21I | YACGTR | 1 cut(s) | 85 |
| PpuMI | RGGWCCY | 1 cut(s) | 41 |
| Psp5II | RGGWCCY | 1 cut(s) | 41 |
| PspN4I | GGNNCC | 7 cut(s) | 42, 43, 136, 137, 138, 186, 260 |
| PspOMI | GGGCCC | 1 cut(s) | 135 |
| PspPI | GGNCC | 3 cut(s) | 41, 135, 136 |
| PspPPI | RGGWCCY | 1 cut(s) | 41 |
| PsuI | RGATCY | 1 cut(s) | 258 |
| RseI | CAYNNNNRTG | 1 cut(s) | 207 |
| SacII | CCGCGG | 1 cut(s) | 265 |
| SaqAI | TTAA | 1 cut(s) | 9 |
| SatI | GCNGC | 3 cut(s) | 103, 247, 265 |
| Sau3AI | GATC | 2 cut(s) | 147, 258 |
| Sau96I | GGNCC | 3 cut(s) | 41, 135, 136 |
| ScrFI | CCNGG | 2 cut(s) | 131, 177 |
| SduI | GDGCHC | 1 cut(s) | 139 |
| SetI | ASST | 4 cut(s) | 60, 87, 190, 251 |
| SfaNI | GCATC | 1 cut(s) | 89 |
| Sfr303I | CCGCGG | 1 cut(s) | 265 |
| SgrAI | CRCCGGYG | 1 cut(s) | 204 |
| SgrBI | CCGCGG | 1 cut(s) | 265 |
| SinI | GGWCC | 1 cut(s) | 41 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 207 |
| SmlI | CTYRAG | 1 cut(s) | 8 |
| SmoI | CTYRAG | 1 cut(s) | 8 |
| Sse9I | AATT | 2 cut(s) | 65, 154 |
| SsiI | CCGC | 5 cut(s) | 53, 105, 180, 262, 264 |
| StyD4I | CCNGG | 2 cut(s) | 129, 175 |
| StyI | CCWWGG | 1 cut(s) | 94 |
| TaaI | ACNGT | 1 cut(s) | 49 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TaqI | TCGA | 1 cut(s) | 146 |
| TasI | AATT | 2 cut(s) | 65, 154 |
| TauI | GCSGC | 1 cut(s) | 267 |
| TfiI | GAWTC | 2 cut(s) | 115, 164 |
| Tru1I | TTAA | 1 cut(s) | 9 |
| Tru9I | TTAA | 1 cut(s) | 9 |
| TseFI | GTSAC | 1 cut(s) | 12 |
| TseI | GCWGC | 2 cut(s) | 102, 246 |
| Tsp45I | GTSAC | 1 cut(s) | 12 |
| TspGWI | ACGGA | 1 cut(s) | 15 |
| Vha464I | CTTAAG | 1 cut(s) | 8 |
| VpaK11BI | GGWCC | 1 cut(s) | 41 |
| XapI | RAATTY | 2 cut(s) | 65, 154 |