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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 27 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 225 |
| AccBSI | CCGCTC | 2 cut(s) | 25, 336 |
| AccII | CGCG | 1 cut(s) | 411 |
| AclWI | GGATC | 2 cut(s) | 93, 112 |
| AcoI | YGGCCR | 1 cut(s) | 93 |
| AcuI | CTGAAG | 1 cut(s) | 107 |
| AcyI | GRCGYC | 1 cut(s) | 386 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 24, 81, 82, 127, 225, 299, 435, 436 |
| AflIII | ACRYGT | 1 cut(s) | 69 |
| AgsI | TTSAA | 1 cut(s) | 326 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 462 |
| AjnI | CCWGG | 2 cut(s) | 30, 313 |
| AluBI | AGCT | 4 cut(s) | 7, 58, 269, 290 |
| AluI | AGCT | 4 cut(s) | 7, 58, 269, 290 |
| Alw21I | GWGCWC | 1 cut(s) | 218 |
| Alw26I | GTCTC | 1 cut(s) | 449 |
| AlwI | GGATC | 2 cut(s) | 93, 112 |
| Ama87I | CYCGRG | 2 cut(s) | 337, 435 |
| AoxI | GGCC | 2 cut(s) | 93, 426 |
| ApeKI | GCWGC | 4 cut(s) | 202, 205, 253, 287 |
| AspLEI | GCGC | 1 cut(s) | 413 |
| AspS9I | GGNCC | 1 cut(s) | 427 |
| AsuC2I | CCSGG | 3 cut(s) | 347, 436, 437 |
| AvaI | CYCGRG | 2 cut(s) | 337, 435 |
| BanI | GGYRCC | 1 cut(s) | 27 |
| BanII | GRGCYC | 2 cut(s) | 184, 334 |
| Bbv12I | GWGCWC | 1 cut(s) | 218 |
| BbvI | GCAGC | 4 cut(s) | 189, 217, 265, 299 |
| BccI | CCATC | 3 cut(s) | 227, 265, 437 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 219, 253 |
| BciT130I | CCWGG | 2 cut(s) | 32, 315 |
| BcnI | CCSGG | 3 cut(s) | 347, 436, 437 |
| BcoDI | GTCTC | 1 cut(s) | 449 |
| BfaI | CTAG | 4 cut(s) | 164, 185, 462, 487 |
| BfmI | CTRYAG | 1 cut(s) | 203 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 146 |
| Bme1390I | CCNGG | 5 cut(s) | 32, 315, 347, 436, 437 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 462 |
| BmeT110I | CYCGRG | 2 cut(s) | 337, 435 |
| BmgT120I | GGNCC | 1 cut(s) | 427 |
| BmiI | GGNNCC | 4 cut(s) | 29, 181, 304, 331 |
| BmrFI | CCNGG | 5 cut(s) | 32, 315, 347, 436, 437 |
| BmrI | ACTGGG | 1 cut(s) | 235 |
| BmsI | GCATC | 2 cut(s) | 189, 231 |
| BmuI | ACTGGG | 1 cut(s) | 235 |
| BpmI | CTGGAG | 3 cut(s) | 53, 80, 321 |
| Bpu10I | CCTNAGC | 1 cut(s) | 99 |
| BpuMI | CCSGG | 3 cut(s) | 347, 436, 437 |
| BsaHI | GRCGYC | 1 cut(s) | 386 |
| BsaI | GGTCTC | 1 cut(s) | 449 |
| BsaJI | CCNNGG | 2 cut(s) | 313, 435 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 24, 81, 82, 127, 225, 299, 435, 436 |
| Bse118I | RCCGGY | 1 cut(s) | 244 |
| Bse1I | ACTGG | 1 cut(s) | 230 |
| BseBI | CCWGG | 2 cut(s) | 32, 315 |
| BseDI | CCNNGG | 2 cut(s) | 313, 435 |
| BseGI | GGATG | 1 cut(s) | 448 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 24, 81, 82, 127, 225, 299, 435, 436 |
| BseMII | CTCAG | 3 cut(s) | 141, 390, 407 |
| BseNI | ACTGG | 1 cut(s) | 230 |
| BseXI | GCAGC | 4 cut(s) | 189, 217, 265, 299 |
| BseYI | CCCAGC | 2 cut(s) | 378, 413 |
| BsgI | GTGCAG | 2 cut(s) | 272, 306 |
| Bsh1236I | CGCG | 1 cut(s) | 411 |
| Bsh1285I | CGRYCG | 1 cut(s) | 249 |
| BshFI | GGCC | 2 cut(s) | 95, 428 |
| BshNI | GGYRCC | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 1 cut(s) | 249 |
| BsiHKAI | GWGCWC | 1 cut(s) | 218 |
| BsiHKCI | CYCGRG | 2 cut(s) | 337, 435 |
| BsiSI | CCGG | 3 cut(s) | 245, 346, 436 |
| BslFI | GGGAC | 2 cut(s) | 58, 450 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 24, 81, 82, 127, 225, 299, 435, 436 |
| BsmAI | GTCTC | 1 cut(s) | 449 |
| BsmFI | GGGAC | 2 cut(s) | 58, 450 |
| BsnI | GGCC | 2 cut(s) | 95, 428 |
| Bso31I | GGTCTC | 1 cut(s) | 449 |
| BsoBI | CYCGRG | 2 cut(s) | 337, 435 |
| Bsp1286I | GDGCHC | 3 cut(s) | 184, 218, 334 |
| Bsp143I | GATC | 3 cut(s) | 85, 117, 153 |
| BspANI | GGCC | 2 cut(s) | 95, 428 |
| BspCNI | CTCAG | 3 cut(s) | 142, 391, 406 |
| BspFNI | CGCG | 1 cut(s) | 411 |
| BspLI | GGNNCC | 4 cut(s) | 29, 181, 304, 331 |
| BspMAI | CTGCAG | 1 cut(s) | 207 |
| BspPI | GGATC | 2 cut(s) | 93, 112 |
| BspQI | GCTCTTC | 1 cut(s) | 206 |
| BspT107I | GGYRCC | 1 cut(s) | 27 |
| BspTNI | GGTCTC | 1 cut(s) | 449 |
| BsrBI | CCGCTC | 2 cut(s) | 25, 336 |
| BsrFI | RCCGGY | 1 cut(s) | 244 |
| BsrI | ACTGG | 1 cut(s) | 230 |
| BssAI | RCCGGY | 1 cut(s) | 244 |
| BssECI | CCNNGG | 2 cut(s) | 313, 435 |
| BssMI | GATC | 3 cut(s) | 85, 117, 153 |
| BssNI | GRCGYC | 1 cut(s) | 386 |
| Bst2UI | CCWGG | 2 cut(s) | 32, 315 |
| Bst4CI | ACNGT | 2 cut(s) | 48, 451 |
| Bst6I | CTCTTC | 1 cut(s) | 206 |
| BstACI | GRCGYC | 1 cut(s) | 386 |
| BstC8I | GCNNGC | 2 cut(s) | 5, 334 |
| BstDEI | CTNAG | 4 cut(s) | 99, 150, 393, 399 |
| BstF5I | GGATG | 1 cut(s) | 448 |
| BstFNI | CGCG | 1 cut(s) | 411 |
| BstHHI | GCGC | 1 cut(s) | 413 |
| BstKTI | GATC | 3 cut(s) | 88, 120, 156 |
| BstMAI | GTCTC | 1 cut(s) | 449 |
| BstMBI | GATC | 3 cut(s) | 85, 117, 153 |
| BstMCI | CGRYCG | 1 cut(s) | 249 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 34, 146, 250, 287, 296, 305, 342 |
| BstNI | CCWGG | 2 cut(s) | 32, 315 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 5 cut(s) | 30, 313, 345, 434, 435 |
| BstSFI | CTRYAG | 1 cut(s) | 203 |
| BstUI | CGCG | 1 cut(s) | 411 |
| BstV1I | GCAGC | 4 cut(s) | 189, 217, 265, 299 |
| BstX2I | RGATCY | 1 cut(s) | 117 |
| BstYI | RGATCY | 1 cut(s) | 117 |
| BsuRI | GGCC | 2 cut(s) | 95, 428 |
| BtsCI | GGATG | 1 cut(s) | 448 |
| BtsI | GCAGTG | 1 cut(s) | 294 |
| BtsIMutI | CAGTG | 1 cut(s) | 294 |
| Cac8I | GCNNGC | 2 cut(s) | 5, 334 |
| CfoI | GCGC | 1 cut(s) | 413 |
| Cfr10I | RCCGGY | 1 cut(s) | 244 |
| Cfr13I | GGNCC | 1 cut(s) | 427 |
| Cfr9I | CCCGGG | 1 cut(s) | 435 |
| CseI | GACGC | 1 cut(s) | 394 |
| CviAII | CATG | 2 cut(s) | 70, 320 |
| DdeI | CTNAG | 4 cut(s) | 99, 150, 393, 399 |
| DpnI | GATC | 3 cut(s) | 87, 119, 155 |
| DpnII | GATC | 3 cut(s) | 85, 117, 153 |
| DriI | GACNNNNNGTC | 1 cut(s) | 462 |
| EaeI | YGGCCR | 1 cut(s) | 93 |
| Eam1104I | CTCTTC | 1 cut(s) | 206 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 462 |
| EarI | CTCTTC | 1 cut(s) | 206 |
| EciI | GGCGGA | 2 cut(s) | 372, 455 |
| Eco24I | GRGCYC | 2 cut(s) | 184, 334 |
| Eco31I | GGTCTC | 1 cut(s) | 449 |
| Eco57I | CTGAAG | 1 cut(s) | 107 |
| Eco88I | CYCGRG | 2 cut(s) | 337, 435 |
| EcoRII | CCWGG | 2 cut(s) | 30, 313 |
| EcoT38I | GRGCYC | 2 cut(s) | 184, 334 |
| FaeI | CATG | 2 cut(s) | 73, 323 |
| FaiI | YATR | 3 cut(s) | 71, 321, 432 |
| FaqI | GGGAC | 2 cut(s) | 58, 450 |
| FatI | CATG | 2 cut(s) | 69, 319 |
| FauI | CCCGC | 3 cut(s) | 120, 169, 341 |
| FokI | GGATG | 1 cut(s) | 455 |
| FriOI | GRGCYC | 2 cut(s) | 184, 334 |
| FspBI | CTAG | 4 cut(s) | 164, 185, 462, 487 |
| GlaI | GCGC | 1 cut(s) | 412 |
| GsaI | CCCAGC | 2 cut(s) | 382, 417 |
| GsuI | CTGGAG | 3 cut(s) | 53, 80, 321 |
| HaeIII | GGCC | 2 cut(s) | 95, 428 |
| HapII | CCGG | 3 cut(s) | 245, 346, 436 |
| HgaI | GACGC | 1 cut(s) | 394 |
| HhaI | GCGC | 1 cut(s) | 413 |
| Hin1I | GRCGYC | 1 cut(s) | 386 |
| Hin1II | CATG | 2 cut(s) | 73, 323 |
| Hin6I | GCGC | 1 cut(s) | 411 |
| HinP1I | GCGC | 1 cut(s) | 411 |
| HinfI | GANTC | 4 cut(s) | 131, 236, 360, 374 |
| HpaII | CCGG | 3 cut(s) | 245, 346, 436 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 484 |
| HpyAV | CCTTC | 3 cut(s) | 131, 166, 320 |
| HpyCH4III | ACNGT | 2 cut(s) | 48, 451 |
| HpyCH4V | TGCA | 3 cut(s) | 205, 253, 287 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 34, 146, 250, 287, 296, 305, 342 |
| HpyF3I | CTNAG | 4 cut(s) | 99, 150, 393, 399 |
| Hsp92I | GRCGYC | 1 cut(s) | 386 |
| Hsp92II | CATG | 2 cut(s) | 73, 323 |
| HspAI | GCGC | 1 cut(s) | 411 |
| Kzo9I | GATC | 3 cut(s) | 85, 117, 153 |
| LguI | GCTCTTC | 1 cut(s) | 206 |
| LmnI | GCTCC | 6 cut(s) | 34, 61, 179, 295, 302, 329 |
| Lsp1109I | GCAGC | 4 cut(s) | 189, 217, 265, 299 |
| LweI | GCATC | 2 cut(s) | 189, 231 |
| MaeI | CTAG | 4 cut(s) | 164, 185, 462, 487 |
| MaeIII | GTNAC | 1 cut(s) | 405 |
| MalI | GATC | 3 cut(s) | 87, 119, 155 |
| MbiI | CCGCTC | 2 cut(s) | 25, 336 |
| MboI | GATC | 3 cut(s) | 85, 117, 153 |
| MboII | GAAGA | 2 cut(s) | 118, 223 |
| MflI | RGATCY | 1 cut(s) | 117 |
| MhlI | GDGCHC | 3 cut(s) | 184, 218, 334 |
| MlyI | GAGTC | 2 cut(s) | 140, 245 |
| MnlI | CCTC | 4 cut(s) | 160, 361, 394, 470 |
| MseI | TTAA | 1 cut(s) | 114 |
| MspA1I | CMGCKG | 2 cut(s) | 127, 382 |
| MspI | CCGG | 3 cut(s) | 245, 346, 436 |
| MspR9I | CCNGG | 5 cut(s) | 32, 315, 347, 436, 437 |
| MvaI | CCWGG | 2 cut(s) | 32, 315 |
| MvnI | CGCG | 1 cut(s) | 411 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 34, 146, 250, 287, 296, 305, 342 |
| NciI | CCSGG | 3 cut(s) | 347, 436, 437 |
| NdeII | GATC | 3 cut(s) | 85, 117, 153 |
| NlaIII | CATG | 2 cut(s) | 73, 323 |
| NlaIV | GGNNCC | 4 cut(s) | 29, 181, 304, 331 |
| NmeAIII | GCCGAG | 1 cut(s) | 250 |
| NmuCI | GTSAC | 1 cut(s) | 405 |
| NspI | RCATGY | 1 cut(s) | 73 |
| PciI | ACATGT | 1 cut(s) | 69 |
| PciSI | GCTCTTC | 1 cut(s) | 206 |
| PfeI | GAWTC | 2 cut(s) | 360, 374 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 225 |
| PleI | GAGTC | 2 cut(s) | 139, 244 |
| PpsI | GAGTC | 2 cut(s) | 139, 244 |
| PscI | ACATGT | 1 cut(s) | 69 |
| Psp6I | CCWGG | 2 cut(s) | 30, 313 |
| PspFI | CCCAGC | 2 cut(s) | 378, 413 |
| PspGI | CCWGG | 2 cut(s) | 30, 313 |
| PspN4I | GGNNCC | 4 cut(s) | 29, 181, 304, 331 |
| PspPI | GGNCC | 1 cut(s) | 427 |
| PstI | CTGCAG | 1 cut(s) | 207 |
| PsuI | RGATCY | 1 cut(s) | 117 |
| SapI | GCTCTTC | 1 cut(s) | 206 |
| SaqAI | TTAA | 1 cut(s) | 114 |
| Sau3AI | GATC | 3 cut(s) | 85, 117, 153 |
| Sau96I | GGNCC | 1 cut(s) | 427 |
| SchI | GAGTC | 2 cut(s) | 140, 245 |
| ScrFI | CCNGG | 5 cut(s) | 32, 315, 347, 436, 437 |
| SduI | GDGCHC | 3 cut(s) | 184, 218, 334 |
| SetI | ASST | 6 cut(s) | 9, 33, 60, 271, 292, 405 |
| SfaNI | GCATC | 2 cut(s) | 189, 231 |
| SfcI | CTRYAG | 1 cut(s) | 203 |
| SmaI | CCCGGG | 1 cut(s) | 437 |
| SspMI | CTAG | 4 cut(s) | 164, 185, 462, 487 |
| StyD4I | CCNGG | 5 cut(s) | 30, 313, 345, 434, 435 |
| TaaI | ACNGT | 2 cut(s) | 48, 451 |
| TaqI | TCGA | 2 cut(s) | 222, 239 |
| TauI | GCSGC | 6 cut(s) | 28, 98, 140, 163, 308, 428 |
| TfiI | GAWTC | 2 cut(s) | 360, 374 |
| Tru1I | TTAA | 1 cut(s) | 114 |
| Tru9I | TTAA | 1 cut(s) | 114 |
| TscAI | CASTG | 1 cut(s) | 301 |
| TseFI | GTSAC | 1 cut(s) | 405 |
| TseI | GCWGC | 4 cut(s) | 202, 205, 253, 287 |
| Tsp45I | GTSAC | 1 cut(s) | 405 |
| TspMI | CCCGGG | 1 cut(s) | 435 |
| TspRI | CASTG | 1 cut(s) | 301 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 225 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XmaI | CCCGGG | 1 cut(s) | 435 |
| XspI | CTAG | 4 cut(s) | 164, 185, 462, 487 |