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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 250 |
| AccII | CGCG | 1 cut(s) | 291 |
| AciI | CCGC | 8 cut(s) | 51, 88, 184, 205, 239, 250, 266, 291 |
| AcoI | YGGCCR | 1 cut(s) | 112 |
| AcsI | RAATTY | 1 cut(s) | 137 |
| AcuI | CTGAAG | 1 cut(s) | 320 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 76, 110 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 69 |
| AjnI | CCWGG | 1 cut(s) | 144 |
| AluBI | AGCT | 5 cut(s) | 160, 175, 193, 256, 298 |
| AluI | AGCT | 5 cut(s) | 160, 175, 193, 256, 298 |
| Alw21I | GWGCWC | 1 cut(s) | 195 |
| Alw26I | GTCTC | 1 cut(s) | 96 |
| Ama87I | CYCGRG | 1 cut(s) | 164 |
| AoxI | GGCC | 3 cut(s) | 105, 112, 228 |
| ApeKI | GCWGC | 5 cut(s) | 82, 85, 160, 175, 253 |
| ApoI | RAATTY | 1 cut(s) | 137 |
| AspS9I | GGNCC | 1 cut(s) | 63 |
| AsuC2I | CCSGG | 1 cut(s) | 104 |
| AvaI | CYCGRG | 1 cut(s) | 164 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BalI | TGGCCA | 1 cut(s) | 114 |
| BanII | GRGCYC | 1 cut(s) | 195 |
| Bbv12I | GWGCWC | 1 cut(s) | 195 |
| BbvI | GCAGC | 5 cut(s) | 69, 97, 147, 162, 265 |
| BccI | CCATC | 1 cut(s) | 53 |
| BciT130I | CCWGG | 1 cut(s) | 146 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BcnI | CCSGG | 1 cut(s) | 104 |
| BcoDI | GTCTC | 1 cut(s) | 96 |
| BfaI | CTAG | 1 cut(s) | 9 |
| BfmI | CTRYAG | 2 cut(s) | 83, 176 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 236 |
| BisI | GCNGC | 7 cut(s) | 83, 86, 161, 176, 251, 254, 292 |
| BlsI | GCNGC | 7 cut(s) | 84, 87, 162, 177, 252, 255, 293 |
| Bme1390I | CCNGG | 2 cut(s) | 104, 146 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 69 |
| BmeT110I | CYCGRG | 1 cut(s) | 164 |
| BmgT120I | GGNCC | 1 cut(s) | 63 |
| BmiI | GGNNCC | 1 cut(s) | 64 |
| BmrFI | CCNGG | 2 cut(s) | 104, 146 |
| BmsI | GCATC | 1 cut(s) | 274 |
| BpuEI | CTTGAG | 2 cut(s) | 236, 344 |
| BpuMI | CCSGG | 1 cut(s) | 104 |
| BsaBI | GATNNNNATC | 1 cut(s) | 308 |
| BsaI | GGTCTC | 1 cut(s) | 96 |
| BsaJI | CCNNGG | 1 cut(s) | 261 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 76, 110 |
| Bse118I | RCCGGY | 1 cut(s) | 345 |
| Bse1I | ACTGG | 2 cut(s) | 60, 240 |
| Bse8I | GATNNNNATC | 1 cut(s) | 308 |
| BseBI | CCWGG | 1 cut(s) | 146 |
| BseDI | CCNNGG | 1 cut(s) | 261 |
| BseGI | GGATG | 1 cut(s) | 64 |
| BseJI | GATNNNNATC | 1 cut(s) | 308 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 76, 110 |
| BseMII | CTCAG | 2 cut(s) | 239, 294 |
| BseNI | ACTGG | 2 cut(s) | 60, 240 |
| BseRI | GAGGAG | 1 cut(s) | 203 |
| BseXI | GCAGC | 5 cut(s) | 69, 97, 147, 162, 265 |
| BseYI | CCCAGC | 1 cut(s) | 40 |
| Bsh1236I | CGCG | 1 cut(s) | 291 |
| BshFI | GGCC | 3 cut(s) | 107, 114, 230 |
| BsiHKAI | GWGCWC | 1 cut(s) | 195 |
| BsiHKCI | CYCGRG | 1 cut(s) | 164 |
| BsiSI | CCGG | 2 cut(s) | 104, 346 |
| BslFI | GGGAC | 1 cut(s) | 76 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 76, 110 |
| BsmAI | GTCTC | 1 cut(s) | 96 |
| BsmFI | GGGAC | 1 cut(s) | 76 |
| BsnI | GGCC | 3 cut(s) | 107, 114, 230 |
| Bso31I | GGTCTC | 1 cut(s) | 96 |
| BsoBI | CYCGRG | 1 cut(s) | 164 |
| Bsp1286I | GDGCHC | 1 cut(s) | 195 |
| Bsp143I | GATC | 3 cut(s) | 5, 168, 334 |
| BspACI | CCGC | 8 cut(s) | 51, 88, 184, 205, 239, 250, 266, 291 |
| BspANI | GGCC | 3 cut(s) | 107, 114, 230 |
| BspCNI | CTCAG | 2 cut(s) | 238, 293 |
| BspFNI | CGCG | 1 cut(s) | 291 |
| BspLI | GGNNCC | 1 cut(s) | 64 |
| BspMAI | CTGCAG | 2 cut(s) | 87, 180 |
| BspTNI | GGTCTC | 1 cut(s) | 96 |
| BsrBI | CCGCTC | 1 cut(s) | 250 |
| BsrFI | RCCGGY | 1 cut(s) | 345 |
| BsrI | ACTGG | 2 cut(s) | 60, 240 |
| BssAI | RCCGGY | 1 cut(s) | 345 |
| BssECI | CCNNGG | 1 cut(s) | 261 |
| BssMI | GATC | 3 cut(s) | 5, 168, 334 |
| BssT1I | CCWWGG | 1 cut(s) | 261 |
| Bst2UI | CCWGG | 1 cut(s) | 146 |
| Bst4CI | ACNGT | 2 cut(s) | 67, 79 |
| BstC8I | GCNNGC | 2 cut(s) | 289, 296 |
| BstDEI | CTNAG | 2 cut(s) | 225, 280 |
| BstF5I | GGATG | 1 cut(s) | 64 |
| BstFNI | CGCG | 1 cut(s) | 291 |
| BstKTI | GATC | 3 cut(s) | 8, 171, 337 |
| BstMAI | GTCTC | 1 cut(s) | 96 |
| BstMBI | GATC | 3 cut(s) | 5, 168, 334 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 181, 190, 236, 284 |
| BstNI | CCWGG | 1 cut(s) | 146 |
| BstSCI | CCNGG | 2 cut(s) | 102, 144 |
| BstSFI | CTRYAG | 2 cut(s) | 83, 176 |
| BstUI | CGCG | 1 cut(s) | 291 |
| BstV1I | GCAGC | 5 cut(s) | 69, 97, 147, 162, 265 |
| BsuRI | GGCC | 3 cut(s) | 107, 114, 230 |
| BtsCI | GGATG | 1 cut(s) | 64 |
| Cac8I | GCNNGC | 2 cut(s) | 289, 296 |
| Cfr10I | RCCGGY | 1 cut(s) | 345 |
| Cfr13I | GGNCC | 1 cut(s) | 63 |
| CviAII | CATG | 1 cut(s) | 134 |
| DdeI | CTNAG | 2 cut(s) | 225, 280 |
| DpnI | GATC | 3 cut(s) | 7, 170, 336 |
| DpnII | GATC | 3 cut(s) | 5, 168, 334 |
| DriI | GACNNNNNGTC | 1 cut(s) | 69 |
| EaeI | YGGCCR | 1 cut(s) | 112 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 69 |
| EciI | GGCGGA | 3 cut(s) | 66, 254, 281 |
| Ecl136II | GAGCTC | 1 cut(s) | 193 |
| Eco130I | CCWWGG | 1 cut(s) | 261 |
| Eco24I | GRGCYC | 1 cut(s) | 195 |
| Eco31I | GGTCTC | 1 cut(s) | 96 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| Eco53kI | GAGCTC | 1 cut(s) | 193 |
| Eco57I | CTGAAG | 1 cut(s) | 320 |
| Eco88I | CYCGRG | 1 cut(s) | 164 |
| EcoICRI | GAGCTC | 1 cut(s) | 193 |
| EcoRI | GAATTC | 1 cut(s) | 137 |
| EcoRII | CCWGG | 1 cut(s) | 144 |
| EcoT14I | CCWWGG | 1 cut(s) | 261 |
| EcoT38I | GRGCYC | 1 cut(s) | 195 |
| ErhI | CCWWGG | 1 cut(s) | 261 |
| FaeI | CATG | 1 cut(s) | 137 |
| FaiI | YATR | 1 cut(s) | 135 |
| FaqI | GGGAC | 1 cut(s) | 76 |
| FatI | CATG | 1 cut(s) | 133 |
| FauI | CCCGC | 2 cut(s) | 177, 198 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 7 cut(s) | 83, 86, 161, 176, 251, 254, 292 |
| FokI | GGATG | 1 cut(s) | 71 |
| FriOI | GRGCYC | 1 cut(s) | 195 |
| Fsp4HI | GCNGC | 7 cut(s) | 83, 86, 161, 176, 251, 254, 292 |
| FspBI | CTAG | 1 cut(s) | 9 |
| GluI | GCNGC | 7 cut(s) | 83, 86, 161, 176, 251, 254, 292 |
| GsaI | CCCAGC | 1 cut(s) | 44 |
| HaeIII | GGCC | 3 cut(s) | 107, 114, 230 |
| HapII | CCGG | 2 cut(s) | 104, 346 |
| Hin1II | CATG | 1 cut(s) | 137 |
| HinfI | GANTC | 2 cut(s) | 12, 221 |
| HpaII | CCGG | 2 cut(s) | 104, 346 |
| Hpy188I | TCNGA | 1 cut(s) | 283 |
| Hpy188III | TCNNGA | 1 cut(s) | 9 |
| Hpy99I | CGWCG | 1 cut(s) | 128 |
| HpyCH4III | ACNGT | 2 cut(s) | 67, 79 |
| HpyCH4V | TGCA | 3 cut(s) | 85, 133, 178 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 181, 190, 236, 284 |
| HpyF3I | CTNAG | 2 cut(s) | 225, 280 |
| Hsp92II | CATG | 1 cut(s) | 137 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| Kzo9I | GATC | 3 cut(s) | 5, 168, 334 |
| LmnI | GCTCC | 2 cut(s) | 190, 247 |
| LpnPI | CCDG | 8 cut(s) | 26, 41, 117, 131, 158, 212, 221, 244 |
| Lsp1109I | GCAGC | 5 cut(s) | 69, 97, 147, 162, 265 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 1 cut(s) | 9 |
| MalI | GATC | 3 cut(s) | 7, 170, 336 |
| MbiI | CCGCTC | 1 cut(s) | 250 |
| MboI | GATC | 3 cut(s) | 5, 168, 334 |
| MboII | GAAGA | 2 cut(s) | 133, 313 |
| MhlI | GDGCHC | 1 cut(s) | 195 |
| MlsI | TGGCCA | 1 cut(s) | 114 |
| MluCI | AATT | 1 cut(s) | 137 |
| MluNI | TGGCCA | 1 cut(s) | 114 |
| MlyI | GAGTC | 1 cut(s) | 6 |
| MmeI | TCCRAC | 1 cut(s) | 98 |
| MnlI | CCTC | 5 cut(s) | 30, 163, 181, 211, 289 |
| Mox20I | TGGCCA | 1 cut(s) | 114 |
| MscI | TGGCCA | 1 cut(s) | 114 |
| Msp20I | TGGCCA | 1 cut(s) | 114 |
| MspA1I | CMGCKG | 2 cut(s) | 88, 256 |
| MspI | CCGG | 2 cut(s) | 104, 346 |
| MspR9I | CCNGG | 2 cut(s) | 104, 146 |
| MvaI | CCWGG | 1 cut(s) | 146 |
| MvnI | CGCG | 1 cut(s) | 291 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 181, 190, 236, 284 |
| NciI | CCSGG | 1 cut(s) | 104 |
| NdeII | GATC | 3 cut(s) | 5, 168, 334 |
| NlaIII | CATG | 1 cut(s) | 137 |
| NlaIV | GGNNCC | 1 cut(s) | 64 |
| PfeI | GAWTC | 1 cut(s) | 221 |
| PkrI | GCNGC | 7 cut(s) | 84, 87, 162, 177, 252, 255, 293 |
| PleI | GAGTC | 1 cut(s) | 6 |
| PpsI | GAGTC | 1 cut(s) | 6 |
| Psp124BI | GAGCTC | 1 cut(s) | 195 |
| Psp6I | CCWGG | 1 cut(s) | 144 |
| PspFI | CCCAGC | 1 cut(s) | 40 |
| PspGI | CCWGG | 1 cut(s) | 144 |
| PspN4I | GGNNCC | 1 cut(s) | 64 |
| PspPI | GGNCC | 1 cut(s) | 63 |
| PstI | CTGCAG | 2 cut(s) | 87, 180 |
| PvuII | CAGCTG | 1 cut(s) | 256 |
| SacI | GAGCTC | 1 cut(s) | 195 |
| SatI | GCNGC | 7 cut(s) | 83, 86, 161, 176, 251, 254, 292 |
| Sau3AI | GATC | 3 cut(s) | 5, 168, 334 |
| Sau96I | GGNCC | 1 cut(s) | 63 |
| SchI | GAGTC | 1 cut(s) | 6 |
| ScrFI | CCNGG | 2 cut(s) | 104, 146 |
| SduI | GDGCHC | 1 cut(s) | 195 |
| SetI | ASST | 7 cut(s) | 155, 162, 177, 195, 258, 300, 324 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| SfcI | CTRYAG | 2 cut(s) | 83, 176 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmlI | CTYRAG | 2 cut(s) | 215, 323 |
| SmoI | CTYRAG | 2 cut(s) | 215, 323 |
| Sse9I | AATT | 1 cut(s) | 137 |
| SsiI | CCGC | 8 cut(s) | 51, 88, 184, 205, 239, 250, 266, 291 |
| SspMI | CTAG | 1 cut(s) | 9 |
| SstI | GAGCTC | 1 cut(s) | 195 |
| StyD4I | CCNGG | 2 cut(s) | 102, 144 |
| StyI | CCWWGG | 1 cut(s) | 261 |
| TaaI | ACNGT | 2 cut(s) | 67, 79 |
| TaqI | TCGA | 3 cut(s) | 155, 171, 195 |
| TasI | AATT | 1 cut(s) | 137 |
| TauI | GCSGC | 2 cut(s) | 253, 294 |
| TfiI | GAWTC | 1 cut(s) | 221 |
| TseI | GCWGC | 5 cut(s) | 82, 85, 160, 175, 253 |
| TspDTI | ATGAA | 1 cut(s) | 150 |
| TspGWI | ACGGA | 3 cut(s) | 59, 84, 112 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XapI | RAATTY | 1 cut(s) | 137 |
| XbaI | TCTAGA | 1 cut(s) | 8 |
| XspI | CTAG | 1 cut(s) | 9 |