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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 798 |
| AccB1I | GGYRCC | 1 cut(s) | 798 |
| AccBSI | CCGCTC | 2 cut(s) | 721, 796 |
| AccII | CGCG | 1 cut(s) | 64 |
| AciI | CCGC | 9 cut(s) | 259, 297, 314, 376, 535, 721, 785, 796, 812 |
| AclWI | GGATC | 1 cut(s) | 930 |
| AcoI | YGGCCR | 1 cut(s) | 658 |
| AcuI | CTGAAG | 2 cut(s) | 749, 938 |
| AfaI | GTAC | 1 cut(s) | 800 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 66, 218, 388, 712, 754, 808 |
| AgsI | TTSAA | 4 cut(s) | 34, 103, 120, 288 |
| AhlI | ACTAGT | 1 cut(s) | 425 |
| AjiI | CACGTC | 1 cut(s) | 387 |
| AjnI | CCWGG | 1 cut(s) | 178 |
| Alw21I | GWGCWC | 1 cut(s) | 374 |
| Alw26I | GTCTC | 4 cut(s) | 213, 515, 858, 892 |
| AlwI | GGATC | 1 cut(s) | 930 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 562 |
| Ama87I | CYCGRG | 3 cut(s) | 711, 749, 869 |
| ApaI | GGGCCC | 2 cut(s) | 394, 535 |
| ApeKI | GCWGC | 7 cut(s) | 112, 163, 321, 345, 356, 676, 724 |
| Asp718I | GGTACC | 1 cut(s) | 798 |
| AspS9I | GGNCC | 9 cut(s) | 148, 221, 338, 390, 391, 531, 532, 559, 609 |
| AsuHPI | GGTGA | 2 cut(s) | 28, 506 |
| AvaI | CYCGRG | 3 cut(s) | 711, 749, 869 |
| AvaII | GGWCC | 2 cut(s) | 221, 609 |
| BaeGI | GKGCMC | 3 cut(s) | 394, 415, 535 |
| BalI | TGGCCA | 1 cut(s) | 660 |
| BanI | GGYRCC | 1 cut(s) | 798 |
| BanII | GRGCYC | 3 cut(s) | 374, 394, 535 |
| BbsI | GAAGAC | 1 cut(s) | 516 |
| Bbv12I | GWGCWC | 1 cut(s) | 374 |
| BbvCI | CCTCAGC | 1 cut(s) | 360 |
| BbvI | GCAGC | 7 cut(s) | 124, 175, 308, 332, 368, 663, 736 |
| BccI | CCATC | 5 cut(s) | 60, 239, 244, 599, 669 |
| BceAI | ACGGC | 3 cut(s) | 434, 839, 853 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 610, 644 |
| BciT130I | CCWGG | 1 cut(s) | 180 |
| BcoDI | GTCTC | 4 cut(s) | 213, 515, 858, 892 |
| BcuI | ACTAGT | 1 cut(s) | 425 |
| BfaI | CTAG | 3 cut(s) | 426, 444, 587 |
| BisI | GCNGC | 8 cut(s) | 113, 164, 322, 346, 357, 677, 722, 725 |
| BlsI | GCNGC | 8 cut(s) | 114, 165, 323, 347, 358, 678, 723, 726 |
| Bme1390I | CCNGG | 1 cut(s) | 180 |
| Bme18I | GGWCC | 2 cut(s) | 221, 609 |
| BmeT110I | CYCGRG | 3 cut(s) | 711, 749, 869 |
| BmgBI | CACGTC | 1 cut(s) | 387 |
| BmgT120I | GGNCC | 9 cut(s) | 148, 221, 338, 390, 391, 531, 532, 559, 609 |
| BmiI | GGNNCC | 9 cut(s) | 222, 278, 340, 392, 393, 532, 533, 610, 800 |
| BmrFI | CCNGG | 1 cut(s) | 180 |
| BmsI | GCATC | 2 cut(s) | 445, 811 |
| BpiI | GAAGAC | 1 cut(s) | 516 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 292, 324, 872, 904 |
| BpmI | CTGGAG | 1 cut(s) | 917 |
| Bpu10I | CCTNAGC | 1 cut(s) | 360 |
| BsaI | GGTCTC | 2 cut(s) | 515, 858 |
| BsaJI | CCNNGG | 5 cut(s) | 178, 179, 418, 710, 807 |
| BsaWI | WCCGGW | 1 cut(s) | 87 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 38, 68 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 66, 218, 388, 712, 754, 808 |
| Bse118I | RCCGGY | 1 cut(s) | 13 |
| Bse3DI | GCAATG | 1 cut(s) | 194 |
| BseBI | CCWGG | 1 cut(s) | 180 |
| BseDI | CCNNGG | 5 cut(s) | 178, 179, 418, 710, 807 |
| BseGI | GGATG | 2 cut(s) | 250, 610 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 66, 218, 388, 712, 754, 808 |
| BseMI | GCAATG | 1 cut(s) | 194 |
| BseMII | CTCAG | 1 cut(s) | 351 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseSI | GKGCMC | 3 cut(s) | 394, 415, 535 |
| BseXI | GCAGC | 7 cut(s) | 124, 175, 308, 332, 368, 663, 736 |
| BsgI | GTGCAG | 2 cut(s) | 331, 375 |
| Bsh1236I | CGCG | 1 cut(s) | 64 |
| BshNI | GGYRCC | 1 cut(s) | 798 |
| BsiHKAI | GWGCWC | 1 cut(s) | 374 |
| BsiHKCI | CYCGRG | 3 cut(s) | 711, 749, 869 |
| BsiSI | CCGG | 2 cut(s) | 14, 88 |
| BslFI | GGGAC | 2 cut(s) | 234, 622 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 66, 218, 388, 712, 754, 808 |
| BsmAI | GTCTC | 4 cut(s) | 213, 515, 858, 892 |
| BsmFI | GGGAC | 2 cut(s) | 234, 622 |
| Bso31I | GGTCTC | 2 cut(s) | 515, 858 |
| BsoBI | CYCGRG | 3 cut(s) | 711, 749, 869 |
| Bsp120I | GGGCCC | 2 cut(s) | 390, 531 |
| Bsp1286I | GDGCHC | 4 cut(s) | 374, 394, 415, 535 |
| Bsp143I | GATC | 1 cut(s) | 922 |
| Bsp68I | TCGCGA | 1 cut(s) | 64 |
| BspACI | CCGC | 9 cut(s) | 259, 297, 314, 376, 535, 721, 785, 796, 812 |
| BspCNI | CTCAG | 1 cut(s) | 352 |
| BspFNI | CGCG | 1 cut(s) | 64 |
| BspLI | GGNNCC | 9 cut(s) | 222, 278, 340, 392, 393, 532, 533, 610, 800 |
| BspPI | GGATC | 1 cut(s) | 930 |
| BspT107I | GGYRCC | 1 cut(s) | 798 |
| BspTNI | GGTCTC | 2 cut(s) | 515, 858 |
| BsrBI | CCGCTC | 2 cut(s) | 721, 796 |
| BsrDI | GCAATG | 1 cut(s) | 194 |
| BsrFI | RCCGGY | 1 cut(s) | 13 |
| BssAI | RCCGGY | 1 cut(s) | 13 |
| BssECI | CCNNGG | 5 cut(s) | 178, 179, 418, 710, 807 |
| BssMI | GATC | 1 cut(s) | 922 |
| BssT1I | CCWWGG | 2 cut(s) | 418, 807 |
| Bst2UI | CCWGG | 1 cut(s) | 180 |
| Bst4CI | ACNGT | 6 cut(s) | 434, 494, 577, 613, 628, 636 |
| Bst6I | CTCTTC | 2 cut(s) | 32, 498 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 562, 637 |
| BstC8I | GCNNGC | 6 cut(s) | 305, 535, 539, 558, 783, 842 |
| BstDEI | CTNAG | 4 cut(s) | 198, 360, 936, 942 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 806 |
| BstF5I | GGATG | 2 cut(s) | 250, 610 |
| BstFNI | CGCG | 1 cut(s) | 64 |
| BstKTI | GATC | 1 cut(s) | 925 |
| BstMAI | GTCTC | 4 cut(s) | 213, 515, 858, 892 |
| BstMBI | GATC | 1 cut(s) | 922 |
| BstNI | CCWGG | 1 cut(s) | 180 |
| BstNSI | RCATGY | 2 cut(s) | 471, 887 |
| BstSCI | CCNGG | 1 cut(s) | 178 |
| BstSLI | GKGCMC | 3 cut(s) | 394, 415, 535 |
| BstUI | CGCG | 1 cut(s) | 64 |
| BstV1I | GCAGC | 7 cut(s) | 124, 175, 308, 332, 368, 663, 736 |
| BstV2I | GAAGAC | 1 cut(s) | 516 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 145 |
| BtgZI | GCGATG | 2 cut(s) | 79, 839 |
| BtrI | CACGTC | 1 cut(s) | 387 |
| BtsCI | GGATG | 2 cut(s) | 250, 610 |
| BtsIMutI | CAGTG | 1 cut(s) | 633 |
| BtuMI | TCGCGA | 1 cut(s) | 64 |
| Cac8I | GCNNGC | 6 cut(s) | 305, 535, 539, 558, 783, 842 |
| CaiI | CAGNNNCTG | 1 cut(s) | 562 |
| Cfr10I | RCCGGY | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 9 cut(s) | 148, 221, 338, 390, 391, 531, 532, 559, 609 |
| Csp6I | GTAC | 1 cut(s) | 799 |
| CviAII | CATG | 7 cut(s) | 26, 139, 205, 468, 680, 884, 913 |
| CviQI | GTAC | 1 cut(s) | 799 |
| DdeI | CTNAG | 4 cut(s) | 198, 360, 936, 942 |
| DpnI | GATC | 1 cut(s) | 924 |
| DpnII | GATC | 1 cut(s) | 922 |
| EaeI | YGGCCR | 1 cut(s) | 658 |
| Eam1104I | CTCTTC | 2 cut(s) | 32, 498 |
| EarI | CTCTTC | 2 cut(s) | 32, 498 |
| EciI | GGCGGA | 2 cut(s) | 800, 827 |
| Ecl136II | GAGCTC | 1 cut(s) | 372 |
| Eco130I | CCWWGG | 2 cut(s) | 418, 807 |
| Eco147I | AGGCCT | 1 cut(s) | 747 |
| Eco24I | GRGCYC | 3 cut(s) | 374, 394, 535 |
| Eco31I | GGTCTC | 2 cut(s) | 515, 858 |
| Eco47I | GGWCC | 2 cut(s) | 221, 609 |
| Eco53kI | GAGCTC | 1 cut(s) | 372 |
| Eco57I | CTGAAG | 2 cut(s) | 749, 938 |
| Eco88I | CYCGRG | 3 cut(s) | 711, 749, 869 |
| EcoICRI | GAGCTC | 1 cut(s) | 372 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 806 |
| EcoO109I | RGGNCCY | 5 cut(s) | 221, 338, 391, 531, 559 |
| EcoRII | CCWGG | 1 cut(s) | 178 |
| EcoT14I | CCWWGG | 2 cut(s) | 418, 807 |
| EcoT38I | GRGCYC | 3 cut(s) | 374, 394, 535 |
| ErhI | CCWWGG | 2 cut(s) | 418, 807 |
| FaeI | CATG | 7 cut(s) | 29, 142, 208, 471, 683, 887, 916 |
| FaqI | GGGAC | 2 cut(s) | 234, 622 |
| FatI | CATG | 7 cut(s) | 25, 138, 204, 467, 679, 883, 912 |
| FauI | CCCGC | 4 cut(s) | 252, 290, 383, 542 |
| Fnu4HI | GCNGC | 8 cut(s) | 113, 164, 322, 346, 357, 677, 722, 725 |
| FokI | GGATG | 2 cut(s) | 257, 617 |
| FriOI | GRGCYC | 3 cut(s) | 374, 394, 535 |
| Fsp4HI | GCNGC | 8 cut(s) | 113, 164, 322, 346, 357, 677, 722, 725 |
| FspBI | CTAG | 3 cut(s) | 426, 444, 587 |
| GluI | GCNGC | 8 cut(s) | 113, 164, 322, 346, 357, 677, 722, 725 |
| GsuI | CTGGAG | 1 cut(s) | 917 |
| HapII | CCGG | 2 cut(s) | 14, 88 |
| Hin1II | CATG | 7 cut(s) | 29, 142, 208, 471, 683, 887, 916 |
| HpaII | CCGG | 2 cut(s) | 14, 88 |
| HphI | GGTGA | 2 cut(s) | 28, 506 |
| Hpy188III | TCNNGA | 3 cut(s) | 63, 288, 751 |
| Hpy99I | CGWCG | 1 cut(s) | 330 |
| HpyAV | CCTTC | 6 cut(s) | 37, 294, 392, 591, 724, 913 |
| HpyCH4III | ACNGT | 6 cut(s) | 434, 494, 577, 613, 628, 636 |
| HpyCH4IV | ACGT | 1 cut(s) | 386 |
| HpyCH4V | TGCA | 6 cut(s) | 348, 356, 458, 631, 679, 763 |
| HpyF3I | CTNAG | 4 cut(s) | 198, 360, 936, 942 |
| HpySE526I | ACGT | 1 cut(s) | 386 |
| Hsp92II | CATG | 7 cut(s) | 29, 142, 208, 471, 683, 887, 916 |
| KpnI | GGTACC | 1 cut(s) | 802 |
| Kzo9I | GATC | 1 cut(s) | 922 |
| LmnI | GCTCC | 5 cut(s) | 276, 300, 331, 377, 898 |
| Lsp1109I | GCAGC | 7 cut(s) | 124, 175, 308, 332, 368, 663, 736 |
| LweI | GCATC | 2 cut(s) | 445, 811 |
| MaeI | CTAG | 3 cut(s) | 426, 444, 587 |
| MaeII | ACGT | 1 cut(s) | 386 |
| MaeIII | GTNAC | 2 cut(s) | 428, 571 |
| MalI | GATC | 1 cut(s) | 924 |
| MbiI | CCGCTC | 2 cut(s) | 721, 796 |
| MboI | GATC | 1 cut(s) | 922 |
| MboII | GAAGA | 5 cut(s) | 46, 49, 512, 515, 521 |
| MfeI | CAATTG | 1 cut(s) | 459 |
| MhlI | GDGCHC | 4 cut(s) | 374, 394, 415, 535 |
| MlsI | TGGCCA | 1 cut(s) | 660 |
| MluCI | AATT | 2 cut(s) | 29, 459 |
| MluNI | TGGCCA | 1 cut(s) | 660 |
| MmeI | TCCRAC | 1 cut(s) | 582 |
| Mox20I | TGGCCA | 1 cut(s) | 660 |
| MscI | TGGCCA | 1 cut(s) | 660 |
| MseI | TTAA | 1 cut(s) | 293 |
| MslI | CAYNNNNRTG | 1 cut(s) | 911 |
| Msp20I | TGGCCA | 1 cut(s) | 660 |
| MspA1I | CMGCKG | 2 cut(s) | 359, 727 |
| MspI | CCGG | 2 cut(s) | 14, 88 |
| MspR9I | CCNGG | 1 cut(s) | 180 |
| MunI | CAATTG | 1 cut(s) | 459 |
| MvaI | CCWGG | 1 cut(s) | 180 |
| MvnI | CGCG | 1 cut(s) | 64 |
| NdeII | GATC | 1 cut(s) | 922 |
| NlaIII | CATG | 7 cut(s) | 29, 142, 208, 471, 683, 887, 916 |
| NlaIV | GGNNCC | 9 cut(s) | 222, 278, 340, 392, 393, 532, 533, 610, 800 |
| NmeAIII | GCCGAG | 2 cut(s) | 562, 629 |
| NmuCI | GTSAC | 2 cut(s) | 428, 571 |
| NruI | TCGCGA | 1 cut(s) | 64 |
| NspI | RCATGY | 2 cut(s) | 471, 887 |
| PaeR7I | CTCGAG | 2 cut(s) | 749, 869 |
| PasI | CCCWGGG | 1 cut(s) | 179 |
| PceI | AGGCCT | 1 cut(s) | 747 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 478, 876 |
| PflFI | GACNNNGTC | 1 cut(s) | 908 |
| PkrI | GCNGC | 8 cut(s) | 114, 165, 323, 347, 358, 678, 723, 726 |
| PpuMI | RGGWCCY | 1 cut(s) | 221 |
| Psp124BI | GAGCTC | 1 cut(s) | 374 |
| Psp5II | RGGWCCY | 1 cut(s) | 221 |
| Psp6I | CCWGG | 1 cut(s) | 178 |
| PspGI | CCWGG | 1 cut(s) | 178 |
| PspN4I | GGNNCC | 9 cut(s) | 222, 278, 340, 392, 393, 532, 533, 610, 800 |
| PspOMI | GGGCCC | 2 cut(s) | 390, 531 |
| PspPI | GGNCC | 9 cut(s) | 148, 221, 338, 390, 391, 531, 532, 559, 609 |
| PspPPI | RGGWCCY | 1 cut(s) | 221 |
| PspXI | VCTCGAGB | 1 cut(s) | 869 |
| PstNI | CAGNNNCTG | 1 cut(s) | 562 |
| PsyI | GACNNNGTC | 1 cut(s) | 908 |
| PvuII | CAGCTG | 2 cut(s) | 359, 727 |
| RruI | TCGCGA | 1 cut(s) | 64 |
| RsaI | GTAC | 1 cut(s) | 800 |
| RsaNI | GTAC | 1 cut(s) | 799 |
| RseI | CAYNNNNRTG | 1 cut(s) | 911 |
| SacI | GAGCTC | 1 cut(s) | 374 |
| SaqAI | TTAA | 1 cut(s) | 293 |
| SatI | GCNGC | 8 cut(s) | 113, 164, 322, 346, 357, 677, 722, 725 |
| Sau3AI | GATC | 1 cut(s) | 922 |
| Sau96I | GGNCC | 9 cut(s) | 148, 221, 338, 390, 391, 531, 532, 559, 609 |
| ScrFI | CCNGG | 1 cut(s) | 180 |
| SduI | GDGCHC | 4 cut(s) | 374, 394, 415, 535 |
| SfaNI | GCATC | 2 cut(s) | 445, 811 |
| Sfr274I | CTCGAG | 2 cut(s) | 749, 869 |
| SinI | GGWCC | 2 cut(s) | 221, 609 |
| SlaI | CTCGAG | 2 cut(s) | 749, 869 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 911 |
| SmlI | CTYRAG | 2 cut(s) | 749, 869 |
| SmoI | CTYRAG | 2 cut(s) | 749, 869 |
| SpeI | ACTAGT | 1 cut(s) | 425 |
| Sse9I | AATT | 2 cut(s) | 29, 459 |
| SseBI | AGGCCT | 1 cut(s) | 747 |
| SsiI | CCGC | 9 cut(s) | 259, 297, 314, 376, 535, 721, 785, 796, 812 |
| SspMI | CTAG | 3 cut(s) | 426, 444, 587 |
| SstI | GAGCTC | 1 cut(s) | 374 |
| StuI | AGGCCT | 1 cut(s) | 747 |
| StyD4I | CCNGG | 1 cut(s) | 178 |
| StyI | CCWWGG | 2 cut(s) | 418, 807 |
| TaaI | ACNGT | 6 cut(s) | 434, 494, 577, 613, 628, 636 |
| TaiI | ACGT | 1 cut(s) | 389 |
| TaqI | TCGA | 3 cut(s) | 265, 750, 870 |
| TasI | AATT | 2 cut(s) | 29, 459 |
| TauI | GCSGC | 1 cut(s) | 724 |
| Tru1I | TTAA | 1 cut(s) | 293 |
| Tru9I | TTAA | 1 cut(s) | 293 |
| TscAI | CASTG | 1 cut(s) | 633 |
| TseFI | GTSAC | 2 cut(s) | 428, 571 |
| TseI | GCWGC | 7 cut(s) | 112, 163, 321, 345, 356, 676, 724 |
| Tsp45I | GTSAC | 2 cut(s) | 428, 571 |
| TspDTI | ATGAA | 3 cut(s) | 42, 513, 842 |
| TspRI | CASTG | 1 cut(s) | 633 |
| Tth111I | GACNNNGTC | 1 cut(s) | 908 |
| VpaK11BI | GGWCC | 2 cut(s) | 221, 609 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 806 |
| XceI | RCATGY | 2 cut(s) | 471, 887 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 176, 778 |
| XhoI | CTCGAG | 2 cut(s) | 749, 869 |
| XspI | CTAG | 3 cut(s) | 426, 444, 587 |