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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 212, 248 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AccBSI | CCGCTC | 1 cut(s) | 360 |
| AccII | CGCG | 1 cut(s) | 435 |
| AclWI | GGATC | 2 cut(s) | 24, 43 |
| AcoI | YGGCCR | 2 cut(s) | 24, 141 |
| AcuI | CTGAAG | 1 cut(s) | 576 |
| AcyI | GRCGYC | 2 cut(s) | 249, 410 |
| AfaI | GTAC | 3 cut(s) | 136, 179, 319 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 12, 13, 58, 139, 258, 459, 460 |
| AgsI | TTSAA | 1 cut(s) | 350 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 486 |
| AjnI | CCWGG | 2 cut(s) | 337, 444 |
| AluBI | AGCT | 4 cut(s) | 91, 122, 221, 302 |
| AluI | AGCT | 4 cut(s) | 91, 122, 221, 302 |
| Alw26I | GTCTC | 2 cut(s) | 435, 473 |
| AlwI | GGATC | 2 cut(s) | 24, 43 |
| Ama87I | CYCGRG | 2 cut(s) | 361, 498 |
| AoxI | GGCC | 6 cut(s) | 24, 130, 141, 207, 450, 537 |
| ApeKI | GCWGC | 7 cut(s) | 10, 91, 200, 235, 238, 286, 332 |
| AspLEI | GCGC | 2 cut(s) | 251, 437 |
| AspS9I | GGNCC | 2 cut(s) | 130, 451 |
| AsuHPI | GGTGA | 1 cut(s) | 113 |
| AvaI | CYCGRG | 2 cut(s) | 361, 498 |
| BaeGI | GKGCMC | 1 cut(s) | 217 |
| BanI | GGYRCC | 2 cut(s) | 212, 248 |
| BbvCI | CCTCAGC | 1 cut(s) | 123 |
| BbvI | GCAGC | 6 cut(s) | 78, 212, 222, 250, 298, 319 |
| BccI | CCATC | 2 cut(s) | 298, 461 |
| BceAI | ACGGC | 2 cut(s) | 117, 504 |
| BciT130I | CCWGG | 2 cut(s) | 339, 446 |
| BcoDI | GTCTC | 2 cut(s) | 435, 473 |
| BfaI | CTAG | 2 cut(s) | 95, 218 |
| BfmI | CTRYAG | 1 cut(s) | 236 |
| BfoI | RGCGCY | 1 cut(s) | 252 |
| Bme1390I | CCNGG | 2 cut(s) | 339, 446 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 486 |
| BmeT110I | CYCGRG | 2 cut(s) | 361, 498 |
| BmgT120I | GGNCC | 2 cut(s) | 130, 451 |
| BmiI | GGNNCC | 5 cut(s) | 131, 214, 250, 443, 568 |
| BmrFI | CCNGG | 2 cut(s) | 339, 446 |
| BmrI | ACTGGG | 2 cut(s) | 268, 480 |
| BmsI | GCATC | 3 cut(s) | 222, 264, 541 |
| BmuI | ACTGGG | 2 cut(s) | 268, 480 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 53, 85, 383, 415 |
| Bpu10I | CCTNAGC | 1 cut(s) | 123 |
| BsaHI | GRCGYC | 2 cut(s) | 249, 410 |
| BsaI | GGTCTC | 1 cut(s) | 473 |
| BsaJI | CCNNGG | 4 cut(s) | 30, 337, 423, 499 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 12, 13, 58, 139, 258, 459, 460 |
| Bse118I | RCCGGY | 3 cut(s) | 209, 277, 542 |
| Bse1I | ACTGG | 2 cut(s) | 263, 486 |
| BseBI | CCWGG | 2 cut(s) | 339, 446 |
| BseDI | CCNNGG | 4 cut(s) | 30, 337, 423, 499 |
| BseGI | GGATG | 2 cut(s) | 472, 526 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 12, 13, 58, 139, 258, 459, 460 |
| BseMII | CTCAG | 4 cut(s) | 114, 285, 416, 431 |
| BseNI | ACTGG | 2 cut(s) | 263, 486 |
| BseRI | GAGGAG | 1 cut(s) | 294 |
| BseSI | GKGCMC | 1 cut(s) | 217 |
| BseX3I | CGGCCG | 1 cut(s) | 141 |
| BseXI | GCAGC | 6 cut(s) | 78, 212, 222, 250, 298, 319 |
| BseYI | CCCAGC | 1 cut(s) | 437 |
| BsgI | GTGCAG | 1 cut(s) | 305 |
| Bsh1236I | CGCG | 1 cut(s) | 435 |
| Bsh1285I | CGRYCG | 2 cut(s) | 144, 282 |
| BshFI | GGCC | 6 cut(s) | 26, 132, 143, 209, 452, 539 |
| BshNI | GGYRCC | 2 cut(s) | 212, 248 |
| BsiEI | CGRYCG | 2 cut(s) | 144, 282 |
| BsiHKCI | CYCGRG | 2 cut(s) | 361, 498 |
| BsiSI | CCGG | 3 cut(s) | 210, 278, 543 |
| BslFI | GGGAC | 1 cut(s) | 474 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 12, 13, 58, 139, 258, 459, 460 |
| BsmAI | GTCTC | 2 cut(s) | 435, 473 |
| BsmFI | GGGAC | 1 cut(s) | 474 |
| BsnI | GGCC | 6 cut(s) | 26, 132, 143, 209, 452, 539 |
| Bso31I | GGTCTC | 1 cut(s) | 473 |
| BsoBI | CYCGRG | 2 cut(s) | 361, 498 |
| Bsp1286I | GDGCHC | 1 cut(s) | 217 |
| Bsp143I | GATC | 3 cut(s) | 16, 48, 84 |
| BspANI | GGCC | 6 cut(s) | 26, 132, 143, 209, 452, 539 |
| BspCNI | CTCAG | 4 cut(s) | 115, 286, 415, 430 |
| BspFNI | CGCG | 1 cut(s) | 435 |
| BspLI | GGNNCC | 5 cut(s) | 131, 214, 250, 443, 568 |
| BspMAI | CTGCAG | 1 cut(s) | 240 |
| BspPI | GGATC | 2 cut(s) | 24, 43 |
| BspT107I | GGYRCC | 2 cut(s) | 212, 248 |
| BspTNI | GGTCTC | 1 cut(s) | 473 |
| BsrBI | CCGCTC | 1 cut(s) | 360 |
| BsrFI | RCCGGY | 3 cut(s) | 209, 277, 542 |
| BsrI | ACTGG | 2 cut(s) | 263, 486 |
| BssAI | RCCGGY | 3 cut(s) | 209, 277, 542 |
| BssECI | CCNNGG | 4 cut(s) | 30, 337, 423, 499 |
| BssMI | GATC | 3 cut(s) | 16, 48, 84 |
| BssNI | GRCGYC | 2 cut(s) | 249, 410 |
| BssT1I | CCWWGG | 1 cut(s) | 30 |
| Bst2UI | CCWGG | 2 cut(s) | 339, 446 |
| Bst4CI | ACNGT | 2 cut(s) | 458, 475 |
| BstACI | GRCGYC | 2 cut(s) | 249, 410 |
| BstC8I | GCNNGC | 3 cut(s) | 112, 358, 537 |
| BstDEI | CTNAG | 4 cut(s) | 123, 294, 402, 417 |
| BstF5I | GGATG | 2 cut(s) | 472, 526 |
| BstFNI | CGCG | 1 cut(s) | 435 |
| BstH2I | RGCGCY | 1 cut(s) | 252 |
| BstHHI | GCGC | 2 cut(s) | 251, 437 |
| BstKTI | GATC | 3 cut(s) | 19, 51, 87 |
| BstMAI | GTCTC | 2 cut(s) | 435, 473 |
| BstMBI | GATC | 3 cut(s) | 16, 48, 84 |
| BstMCI | CGRYCG | 2 cut(s) | 144, 282 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 146, 206, 283, 329, 366, 378, 575, 584 |
| BstNI | CCWGG | 2 cut(s) | 339, 446 |
| BstSCI | CCNGG | 2 cut(s) | 337, 444 |
| BstSFI | CTRYAG | 1 cut(s) | 236 |
| BstSLI | GKGCMC | 1 cut(s) | 217 |
| BstUI | CGCG | 1 cut(s) | 435 |
| BstV1I | GCAGC | 6 cut(s) | 78, 212, 222, 250, 298, 319 |
| BstX2I | RGATCY | 1 cut(s) | 48 |
| BstYI | RGATCY | 1 cut(s) | 48 |
| BstZI | CGGCCG | 1 cut(s) | 141 |
| BsuRI | GGCC | 6 cut(s) | 26, 132, 143, 209, 452, 539 |
| BtsCI | GGATG | 2 cut(s) | 472, 526 |
| BtsI | GCAGTG | 1 cut(s) | 327 |
| BtsIMutI | CAGTG | 1 cut(s) | 327 |
| Cac8I | GCNNGC | 3 cut(s) | 112, 358, 537 |
| CciNI | GCGGCCGC | 1 cut(s) | 141 |
| CfoI | GCGC | 2 cut(s) | 251, 437 |
| Cfr10I | RCCGGY | 3 cut(s) | 209, 277, 542 |
| Cfr13I | GGNCC | 2 cut(s) | 130, 451 |
| CseI | GACGC | 2 cut(s) | 258, 418 |
| Csp6I | GTAC | 3 cut(s) | 135, 178, 318 |
| CviAII | CATG | 1 cut(s) | 344 |
| CviQI | GTAC | 3 cut(s) | 135, 178, 318 |
| DdeI | CTNAG | 4 cut(s) | 123, 294, 402, 417 |
| DinI | GGCGCC | 1 cut(s) | 250 |
| DpnI | GATC | 3 cut(s) | 18, 50, 86 |
| DpnII | GATC | 3 cut(s) | 16, 48, 84 |
| DriI | GACNNNNNGTC | 1 cut(s) | 486 |
| EaeI | YGGCCR | 2 cut(s) | 24, 141 |
| EagI | CGGCCG | 1 cut(s) | 141 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 486 |
| EciI | GGCGGA | 5 cut(s) | 55, 188, 396, 479, 519 |
| EclXI | CGGCCG | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 1 cut(s) | 30 |
| Eco31I | GGTCTC | 1 cut(s) | 473 |
| Eco52I | CGGCCG | 1 cut(s) | 141 |
| Eco57I | CTGAAG | 1 cut(s) | 576 |
| Eco88I | CYCGRG | 2 cut(s) | 361, 498 |
| EcoRII | CCWGG | 2 cut(s) | 337, 444 |
| EcoT14I | CCWWGG | 1 cut(s) | 30 |
| EgeI | GGCGCC | 1 cut(s) | 250 |
| EheI | GGCGCC | 1 cut(s) | 250 |
| ErhI | CCWWGG | 1 cut(s) | 30 |
| FaeI | CATG | 1 cut(s) | 347 |
| FaiI | YATR | 2 cut(s) | 160, 345 |
| FaqI | GGGAC | 1 cut(s) | 474 |
| FatI | CATG | 1 cut(s) | 343 |
| FauI | CCCGC | 4 cut(s) | 6, 51, 365, 592 |
| FokI | GGATG | 2 cut(s) | 479, 513 |
| FspBI | CTAG | 2 cut(s) | 95, 218 |
| GlaI | GCGC | 2 cut(s) | 250, 436 |
| GsaI | CCCAGC | 1 cut(s) | 441 |
| HaeII | RGCGCY | 1 cut(s) | 252 |
| HaeIII | GGCC | 6 cut(s) | 26, 132, 143, 209, 452, 539 |
| HapII | CCGG | 3 cut(s) | 210, 278, 543 |
| HgaI | GACGC | 2 cut(s) | 258, 418 |
| HhaI | GCGC | 2 cut(s) | 251, 437 |
| Hin1I | GRCGYC | 2 cut(s) | 249, 410 |
| Hin1II | CATG | 1 cut(s) | 347 |
| Hin6I | GCGC | 2 cut(s) | 249, 435 |
| HinP1I | GCGC | 2 cut(s) | 249, 435 |
| HinfI | GANTC | 3 cut(s) | 62, 155, 398 |
| HpaII | CCGG | 3 cut(s) | 210, 278, 543 |
| HphI | GGTGA | 1 cut(s) | 113 |
| Hpy166II | GTNNAC | 1 cut(s) | 524 |
| Hpy188I | TCNGA | 4 cut(s) | 295, 309, 424, 508 |
| Hpy188III | TCNNGA | 1 cut(s) | 389 |
| Hpy8I | GTNNAC | 1 cut(s) | 524 |
| Hpy99I | CGWCG | 1 cut(s) | 274 |
| HpyAV | CCTTC | 3 cut(s) | 62, 199, 551 |
| HpyCH4III | ACNGT | 2 cut(s) | 458, 475 |
| HpyCH4V | TGCA | 2 cut(s) | 238, 286 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 146, 206, 283, 329, 366, 378, 575, 584 |
| HpyF3I | CTNAG | 4 cut(s) | 123, 294, 402, 417 |
| Hsp92I | GRCGYC | 2 cut(s) | 249, 410 |
| Hsp92II | CATG | 1 cut(s) | 347 |
| HspAI | GCGC | 2 cut(s) | 249, 435 |
| KasI | GGCGCC | 1 cut(s) | 248 |
| Kzo9I | GATC | 3 cut(s) | 16, 48, 84 |
| LmnI | GCTCC | 2 cut(s) | 307, 566 |
| Lsp1109I | GCAGC | 6 cut(s) | 78, 212, 222, 250, 298, 319 |
| LweI | GCATC | 3 cut(s) | 222, 264, 541 |
| MaeI | CTAG | 2 cut(s) | 95, 218 |
| MalI | GATC | 3 cut(s) | 18, 50, 86 |
| MbiI | CCGCTC | 1 cut(s) | 360 |
| MboI | GATC | 3 cut(s) | 16, 48, 84 |
| MboII | GAAGA | 1 cut(s) | 362 |
| MflI | RGATCY | 1 cut(s) | 48 |
| MhlI | GDGCHC | 1 cut(s) | 217 |
| Mly113I | GGCGCC | 1 cut(s) | 249 |
| MlyI | GAGTC | 3 cut(s) | 71, 164, 392 |
| MmeI | TCCRAC | 1 cut(s) | 332 |
| MnlI | CCTC | 9 cut(s) | 79, 91, 118, 178, 289, 315, 385, 418, 494 |
| MspA1I | CMGCKG | 2 cut(s) | 149, 406 |
| MspI | CCGG | 3 cut(s) | 210, 278, 543 |
| MspR9I | CCNGG | 2 cut(s) | 339, 446 |
| MvaI | CCWGG | 2 cut(s) | 339, 446 |
| MvnI | CGCG | 1 cut(s) | 435 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 146, 206, 283, 329, 366, 378, 575, 584 |
| NarI | GGCGCC | 1 cut(s) | 249 |
| NdeII | GATC | 3 cut(s) | 16, 48, 84 |
| NlaIII | CATG | 1 cut(s) | 347 |
| NlaIV | GGNNCC | 5 cut(s) | 131, 214, 250, 443, 568 |
| NotI | GCGGCCGC | 1 cut(s) | 141 |
| PaeR7I | CTCGAG | 1 cut(s) | 361 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PleI | GAGTC | 3 cut(s) | 70, 163, 392 |
| PluTI | GGCGCC | 1 cut(s) | 252 |
| PpsI | GAGTC | 3 cut(s) | 70, 163, 392 |
| Psp6I | CCWGG | 2 cut(s) | 337, 444 |
| PspFI | CCCAGC | 1 cut(s) | 437 |
| PspGI | CCWGG | 2 cut(s) | 337, 444 |
| PspN4I | GGNNCC | 5 cut(s) | 131, 214, 250, 443, 568 |
| PspPI | GGNCC | 2 cut(s) | 130, 451 |
| PspXI | VCTCGAGB | 1 cut(s) | 361 |
| PstI | CTGCAG | 1 cut(s) | 240 |
| PsuI | RGATCY | 1 cut(s) | 48 |
| RsaI | GTAC | 3 cut(s) | 136, 179, 319 |
| RsaNI | GTAC | 3 cut(s) | 135, 178, 318 |
| Sau3AI | GATC | 3 cut(s) | 16, 48, 84 |
| Sau96I | GGNCC | 2 cut(s) | 130, 451 |
| SchI | GAGTC | 3 cut(s) | 71, 164, 392 |
| ScrFI | CCNGG | 2 cut(s) | 339, 446 |
| SduI | GDGCHC | 1 cut(s) | 217 |
| SetI | ASST | 8 cut(s) | 81, 93, 124, 223, 304, 429, 562, 576 |
| SfaNI | GCATC | 3 cut(s) | 222, 264, 541 |
| SfcI | CTRYAG | 1 cut(s) | 236 |
| SfoI | GGCGCC | 1 cut(s) | 250 |
| Sfr274I | CTCGAG | 1 cut(s) | 361 |
| SgrAI | CRCCGGYG | 1 cut(s) | 542 |
| SlaI | CTCGAG | 1 cut(s) | 361 |
| SmlI | CTYRAG | 1 cut(s) | 361 |
| SmoI | CTYRAG | 1 cut(s) | 361 |
| SspDI | GGCGCC | 1 cut(s) | 248 |
| SspMI | CTAG | 2 cut(s) | 95, 218 |
| StyD4I | CCNGG | 2 cut(s) | 337, 444 |
| StyI | CCWWGG | 1 cut(s) | 30 |
| TaaI | ACNGT | 2 cut(s) | 458, 475 |
| TaqI | TCGA | 2 cut(s) | 272, 362 |
| TatI | WGTACW | 1 cut(s) | 177 |
| TauI | GCSGC | 8 cut(s) | 29, 143, 146, 149, 372, 452, 535, 542 |
| TscAI | CASTG | 1 cut(s) | 334 |
| TseI | GCWGC | 7 cut(s) | 10, 91, 200, 235, 238, 286, 332 |
| TspRI | CASTG | 1 cut(s) | 334 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| XhoI | CTCGAG | 1 cut(s) | 361 |
| XspI | CTAG | 2 cut(s) | 95, 218 |